Wall clock time and date at job start Wed Apr 1 2020 01:18:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42907 * 113.99851 * 2 1 4 4 C 1.52999 * 109.47354 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.46716 * 55.00437 * 4 3 2 6 6 C 1.52997 * 109.47317 * 295.00528 * 4 3 2 7 7 C 1.52992 * 109.46961 * 175.00066 * 4 3 2 8 8 C 1.50707 * 109.46966 * 185.00310 * 7 4 3 9 9 O 1.21279 * 119.99998 * 0.02562 * 8 7 4 10 10 N 1.34778 * 119.99809 * 180.02562 * 8 7 4 11 11 C 1.47422 * 125.64951 * 359.69256 * 10 8 7 12 12 C 1.54696 * 104.94186 * 204.07372 * 11 10 8 13 13 C 1.55156 * 101.67343 * 323.27836 * 12 11 10 14 14 H 1.09001 * 110.71868 * 276.96817 * 13 12 11 15 15 N 1.46905 * 110.71717 * 153.69984 * 13 12 11 16 16 C 1.46900 * 111.00122 * 91.47609 * 15 13 12 17 17 C 1.50697 * 109.47096 * 179.97438 * 16 15 13 18 18 O 1.21284 * 120.00328 * 359.97438 * 17 16 15 19 19 N 1.34779 * 120.00010 * 180.02562 * 17 16 15 20 20 C 1.37087 * 120.00139 * 179.97438 * 19 17 16 21 21 H 1.08000 * 120.00454 * 359.97438 * 20 19 17 22 22 C 1.38953 * 120.00116 * 180.02562 * 20 19 17 23 23 N 1.31417 * 120.00242 * 180.02562 * 22 20 19 24 24 Si 1.86792 * 120.00024 * 359.97438 * 22 20 19 25 25 H 1.48508 * 109.46843 * 90.00447 * 24 22 20 26 26 H 1.48495 * 109.47546 * 210.00248 * 24 22 20 27 27 H 1.48496 * 109.47581 * 330.00647 * 24 22 20 28 28 C 1.47019 * 125.64691 * 180.02562 * 10 8 7 29 29 H 1.09007 * 109.88089 * 298.47090 * 28 10 8 30 30 C 1.53000 * 109.88536 * 59.48403 * 28 10 8 31 31 H 1.09004 * 109.46882 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47392 * 299.99675 * 1 2 3 33 33 H 1.08996 * 109.47221 * 60.00002 * 1 2 3 34 34 H 1.09006 * 109.46763 * 59.99684 * 3 2 1 35 35 H 1.08997 * 109.47320 * 300.00734 * 3 2 1 36 36 H 1.09002 * 109.47153 * 299.99641 * 6 4 3 37 37 H 1.09001 * 109.46832 * 179.97438 * 6 4 3 38 38 H 1.09004 * 109.47261 * 59.99813 * 6 4 3 39 39 H 1.08996 * 109.47729 * 305.00119 * 7 4 3 40 40 H 1.09001 * 109.47563 * 65.00698 * 7 4 3 41 41 H 1.08995 * 110.36768 * 323.00267 * 11 10 8 42 42 H 1.09000 * 110.36942 * 85.32648 * 11 10 8 43 43 H 1.08995 * 111.10221 * 205.10946 * 12 11 10 44 44 H 1.08996 * 110.81307 * 81.31995 * 12 11 10 45 45 H 1.00894 * 111.00075 * 327.51856 * 15 13 12 46 46 H 1.08994 * 109.47125 * 300.00082 * 16 15 13 47 47 H 1.09006 * 109.46934 * 59.99906 * 16 15 13 48 48 H 0.97004 * 120.00011 * 359.97438 * 19 17 16 49 49 H 0.96989 * 120.00491 * 179.97438 * 23 22 20 50 50 H 1.08997 * 109.47035 * 58.54894 * 30 28 10 51 51 H 1.09005 * 109.47182 * 178.55306 * 30 28 10 52 52 H 1.09004 * 109.46614 * 298.54821 * 30 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 1 3.8514 0.5684 -0.8410 6 6 3.9952 0.5370 1.3082 7 6 4.1572 2.5770 -0.1251 8 6 5.6538 2.4496 -0.2480 9 8 6.1720 1.3531 -0.2367 10 7 6.4164 3.5541 -0.3705 11 6 5.9196 4.9417 -0.4050 12 6 7.0154 5.7392 -1.1509 13 6 8.3082 5.0505 -0.6391 14 1 8.6067 5.4594 0.3261 15 7 9.3928 5.1863 -1.6206 16 6 10.1931 6.3898 -1.3577 17 6 11.2936 6.4948 -2.3819 18 8 11.4010 5.6500 -3.2455 19 7 12.1591 7.5270 -2.3375 20 6 13.1606 7.6223 -3.2688 21 1 13.2563 6.8700 -4.0378 22 6 14.0532 8.6861 -3.2228 23 7 15.0130 8.7778 -4.1159 24 14 13.8883 9.9869 -1.8924 25 1 14.6890 9.5871 -0.7073 26 1 14.3836 11.2883 -2.4082 27 1 12.4612 10.1193 -1.5037 28 6 7.8808 3.5743 -0.4988 29 1 8.3368 3.1370 0.3895 30 6 8.3053 2.7891 -1.7415 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5137 0.8900 33 1 -0.3633 0.5138 -0.8899 34 1 1.6885 1.8464 0.8900 35 1 1.6885 1.8465 -0.8899 36 1 3.6793 1.1534 2.1499 37 1 5.0818 0.4506 1.3084 38 1 3.5522 -0.4549 1.3977 39 1 3.7609 3.0734 -1.0108 40 1 3.9142 3.1648 0.7601 41 1 4.9761 4.9934 -0.9483 42 1 5.7969 5.3260 0.6076 43 1 6.9955 6.7917 -0.8686 44 1 6.9120 5.6236 -2.2297 45 1 9.0299 5.1918 -2.5620 46 1 9.5546 7.2710 -1.4183 47 1 10.6297 6.3252 -0.3610 48 1 12.0734 8.2025 -1.6466 49 1 15.6358 9.5205 -4.0840 50 1 7.8398 3.2269 -2.6244 51 1 9.3897 2.8300 -1.8443 52 1 7.9888 1.7509 -1.6408 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001179821772.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:18:09 Heat of formation + Delta-G solvation = -138.243743 kcal Electronic energy + Delta-G solvation = -29919.484029 eV Core-core repulsion = 25725.101161 eV Total energy + Delta-G solvation = -4194.382868 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.45425 -40.29824 -39.42543 -38.69296 -36.20675 -35.64168 -35.53925 -33.72989 -32.31064 -31.74075 -29.07899 -28.22661 -28.03387 -26.44837 -26.31695 -25.16136 -23.85129 -21.96115 -21.29444 -20.84322 -20.29192 -19.80555 -18.39372 -17.65663 -17.39005 -17.16279 -16.99850 -16.81759 -16.46937 -16.37542 -16.04979 -15.64757 -15.51138 -14.99815 -14.89278 -14.53921 -14.52109 -14.39245 -14.09318 -14.03083 -13.80254 -13.58972 -13.39497 -13.22435 -13.03182 -13.00647 -12.90620 -12.70977 -12.46026 -12.40641 -12.38837 -12.05277 -11.96572 -11.87297 -11.78742 -11.66792 -11.60547 -11.49058 -10.66464 -10.57056 -10.40255 -10.22700 -9.60497 -9.24527 -8.39410 -6.00556 1.31502 1.38224 1.46751 1.69627 1.92509 1.99469 2.25284 2.75839 2.90340 3.17346 3.33636 3.51073 3.66464 3.82185 3.89849 4.05478 4.09758 4.16716 4.21807 4.25097 4.39708 4.46500 4.47648 4.48963 4.51012 4.53021 4.59515 4.61492 4.63242 4.70843 4.73156 4.77739 4.82867 4.88279 4.94457 5.03944 5.10281 5.12813 5.16482 5.32238 5.40793 5.43454 5.50078 5.54901 5.93368 6.08860 6.29048 6.37012 6.61098 6.62371 6.90774 7.25017 7.42580 8.00200 8.78427 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.036177 B = 0.001675 C = 0.001648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.779043 B =16713.742037 C =16983.334221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.420 6.420 3 C 0.068 3.932 4 C -0.075 4.075 5 H 0.056 0.944 6 C -0.143 4.143 7 C -0.120 4.120 8 C 0.520 3.480 9 O -0.578 6.578 10 N -0.616 5.616 11 C 0.101 3.899 12 C -0.160 4.160 13 C 0.087 3.913 14 H 0.115 0.885 15 N -0.675 5.675 16 C 0.065 3.935 17 C 0.447 3.553 18 O -0.616 6.616 19 N -0.591 5.591 20 C -0.330 4.330 21 H 0.052 0.948 22 C -0.016 4.016 23 N -0.937 5.937 24 Si 0.967 3.033 25 H -0.259 1.259 26 H -0.277 1.277 27 H -0.226 1.226 28 C 0.144 3.856 29 H 0.063 0.937 30 C -0.140 4.140 31 H 0.089 0.911 32 H 0.053 0.947 33 H 0.050 0.950 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.048 0.952 38 H 0.047 0.953 39 H 0.118 0.882 40 H 0.124 0.876 41 H 0.100 0.900 42 H 0.097 0.903 43 H 0.111 0.889 44 H 0.069 0.931 45 H 0.347 0.653 46 H 0.086 0.914 47 H 0.116 0.884 48 H 0.391 0.609 49 H 0.278 0.722 50 H 0.046 0.954 51 H 0.063 0.937 52 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.519 -3.454 16.337 36.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.340 6.340 3 C -0.009 4.009 4 C -0.094 4.094 5 H 0.075 0.925 6 C -0.200 4.200 7 C -0.159 4.159 8 C 0.311 3.689 9 O -0.458 6.458 10 N -0.351 5.351 11 C -0.021 4.021 12 C -0.199 4.199 13 C -0.024 4.024 14 H 0.133 0.867 15 N -0.307 5.307 16 C -0.067 4.067 17 C 0.235 3.765 18 O -0.501 6.501 19 N -0.233 5.233 20 C -0.459 4.459 21 H 0.071 0.929 22 C -0.215 4.215 23 N -0.577 5.577 24 Si 0.787 3.213 25 H -0.184 1.184 26 H -0.202 1.202 27 H -0.149 1.149 28 C 0.040 3.960 29 H 0.081 0.919 30 C -0.198 4.198 31 H 0.108 0.892 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.136 0.864 40 H 0.142 0.858 41 H 0.119 0.881 42 H 0.115 0.885 43 H 0.129 0.871 44 H 0.088 0.912 45 H 0.168 0.832 46 H 0.104 0.896 47 H 0.134 0.866 48 H 0.226 0.774 49 H 0.088 0.912 50 H 0.065 0.935 51 H 0.082 0.918 52 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -31.505 -5.139 16.021 35.716 hybrid contribution 0.232 1.131 -0.464 1.245 sum -31.273 -4.008 15.557 35.158 Atomic orbital electron populations 1.22897 0.79552 1.03557 1.00979 1.87860 1.21360 1.29143 1.95628 1.22625 0.92137 0.84423 1.01677 1.20782 0.93561 0.95715 0.99318 0.92543 1.21798 1.01250 1.00557 0.96420 1.21624 0.89043 0.98571 1.06688 1.20901 0.90309 0.82450 0.75236 1.90683 1.75798 1.27470 1.51854 1.48726 1.06850 1.07426 1.72063 1.22494 0.98265 0.79089 1.02244 1.23515 0.94365 1.01369 1.00679 1.22627 0.89552 0.93099 0.97083 0.86745 1.59938 1.24530 1.39133 1.07136 1.21664 0.93426 0.93543 0.98092 1.21091 0.85298 0.82029 0.88072 1.90559 1.75744 1.42667 1.41117 1.42011 1.27911 1.24456 1.28874 1.19001 1.07336 1.10266 1.09282 0.92948 1.26150 0.94529 1.00307 1.00489 1.69813 1.17639 1.33128 1.37167 0.85338 0.81016 0.77136 0.77836 1.18356 1.20230 1.14908 1.21369 0.80417 0.96508 0.97738 0.91926 1.21759 1.01874 0.98983 0.97183 0.89219 0.92859 0.93103 0.91313 0.91742 0.91779 0.93262 0.93428 0.86387 0.85800 0.88145 0.88529 0.87062 0.91211 0.83244 0.89627 0.86602 0.77370 0.91216 0.93494 0.91810 0.94271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 113.37 1.25 1.49 16 2 O -0.42 -6.98 10.24 -148.98 -1.53 -8.51 16 3 C 0.07 0.79 5.32 71.98 0.38 1.17 16 4 C -0.07 -1.19 2.27 -10.80 -0.02 -1.21 16 5 H 0.06 1.25 7.95 -2.39 -0.02 1.23 16 6 C -0.14 -2.67 8.83 71.98 0.64 -2.03 16 7 C -0.12 -1.35 4.19 29.85 0.12 -1.22 16 8 C 0.52 10.61 7.35 87.66 0.64 11.25 16 9 O -0.58 -17.42 12.86 -3.03 -0.04 -17.46 16 10 N -0.62 -10.67 3.08 -788.49 -2.43 -13.10 16 11 C 0.10 0.85 6.68 86.78 0.58 1.43 16 12 C -0.16 -1.79 6.65 31.91 0.21 -1.58 16 13 C 0.09 1.53 3.15 46.10 0.15 1.67 16 14 H 0.11 1.58 7.83 -2.39 -0.02 1.56 16 15 N -0.68 -17.74 4.41 -489.45 -2.16 -19.89 16 16 C 0.06 1.73 6.03 85.56 0.52 2.25 16 17 C 0.45 19.29 7.82 87.66 0.69 19.97 16 18 O -0.62 -33.59 15.78 -3.04 -0.05 -33.64 16 19 N -0.59 -26.87 5.09 -307.00 -1.56 -28.43 16 20 C -0.33 -19.10 10.16 84.04 0.85 -18.25 16 21 H 0.05 3.65 7.39 -2.91 -0.02 3.63 16 22 C -0.02 -0.90 5.50 84.93 0.47 -0.43 16 23 N -0.94 -56.32 13.96 21.66 0.30 -56.01 16 24 Si 0.97 37.74 27.74 68.60 1.90 39.65 16 25 H -0.26 -9.65 7.11 99.48 0.71 -8.95 16 26 H -0.28 -10.81 7.11 99.48 0.71 -10.11 16 27 H -0.23 -7.16 6.52 99.48 0.65 -6.51 16 28 C 0.14 3.18 3.48 45.34 0.16 3.34 16 29 H 0.06 1.55 8.14 -2.38 -0.02 1.53 16 30 C -0.14 -3.96 8.26 71.98 0.59 -3.36 16 31 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.05 0.35 8.14 -2.39 -0.02 0.33 16 33 H 0.05 0.36 8.14 -2.39 -0.02 0.34 16 34 H 0.07 0.53 8.14 -2.38 -0.02 0.51 16 35 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 36 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.05 1.19 5.95 -2.39 -0.01 1.18 16 38 H 0.05 0.97 7.82 -2.38 -0.02 0.95 16 39 H 0.12 0.77 7.84 -2.39 -0.02 0.75 16 40 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.10 0.42 7.48 -2.39 -0.02 0.40 16 42 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 43 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 44 H 0.07 0.98 7.77 -2.39 -0.02 0.96 16 45 H 0.35 10.10 7.43 -89.70 -0.67 9.43 16 46 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 47 H 0.12 2.55 8.08 -2.38 -0.02 2.53 16 48 H 0.39 14.37 5.76 -92.71 -0.53 13.84 16 49 H 0.28 15.29 8.31 -92.72 -0.77 14.52 16 50 H 0.05 1.29 7.95 -2.39 -0.02 1.27 16 51 H 0.06 2.07 7.44 -2.38 -0.02 2.05 16 52 H 0.04 1.25 6.74 -2.39 -0.02 1.23 16 Total: -1.00 -85.95 411.90 1.32 -84.63 By element: Atomic # 1 Polarization: 38.62 SS G_CDS: -0.34 Total: 38.27 kcal Atomic # 6 Polarization: 7.27 SS G_CDS: 7.22 Total: 14.49 kcal Atomic # 7 Polarization: -111.59 SS G_CDS: -5.85 Total: -117.44 kcal Atomic # 8 Polarization: -57.99 SS G_CDS: -1.61 Total: -59.60 kcal Atomic # 14 Polarization: 37.74 SS G_CDS: 1.90 Total: 39.65 kcal Total: -85.95 1.32 -84.63 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179821772.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.616 kcal (2) G-P(sol) polarization free energy of solvation -85.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds