Wall clock time and date at job start Wed Apr 1 2020 01:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42903 * 113.99823 * 2 1 4 4 C 1.53006 * 109.47256 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.47050 * 305.00250 * 4 3 2 6 6 C 1.52999 * 109.46626 * 64.99949 * 4 3 2 7 7 C 1.52997 * 109.47164 * 185.00247 * 4 3 2 8 8 C 1.50695 * 109.47112 * 175.00266 * 7 4 3 9 9 O 1.21290 * 120.00058 * 359.97438 * 8 7 4 10 10 N 1.34775 * 120.00103 * 179.97438 * 8 7 4 11 11 C 1.47420 * 125.64817 * 0.02989 * 10 8 7 12 12 C 1.54914 * 104.83261 * 204.08953 * 11 10 8 13 13 C 1.55162 * 101.57900 * 322.98952 * 12 11 10 14 14 H 1.09000 * 110.71565 * 276.96074 * 13 12 11 15 15 N 1.46901 * 110.71940 * 153.86651 * 13 12 11 16 16 C 1.46904 * 110.99933 * 86.45243 * 15 13 12 17 17 C 1.50704 * 109.46753 * 179.97438 * 16 15 13 18 18 O 1.21293 * 120.00195 * 359.97438 * 17 16 15 19 19 N 1.34779 * 119.99669 * 179.97438 * 17 16 15 20 20 C 1.37095 * 119.99647 * 179.97438 * 19 17 16 21 21 H 1.07997 * 120.00024 * 0.02562 * 20 19 17 22 22 C 1.38950 * 119.99672 * 179.97438 * 20 19 17 23 23 N 1.31410 * 120.00373 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99963 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47017 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.47126 * 120.00230 * 24 22 20 27 27 H 1.48502 * 109.47468 * 240.00558 * 24 22 20 28 28 C 1.47026 * 125.64740 * 179.71091 * 10 8 7 29 29 H 1.08996 * 109.88705 * 298.39993 * 28 10 8 30 30 C 1.53005 * 109.87818 * 59.56769 * 28 10 8 31 31 H 1.08997 * 109.47704 * 59.99595 * 1 2 3 32 32 H 1.09003 * 109.46944 * 180.02562 * 1 2 3 33 33 H 1.09007 * 109.47137 * 299.99376 * 1 2 3 34 34 H 1.09004 * 109.46868 * 60.00838 * 3 2 1 35 35 H 1.08992 * 109.47403 * 300.00259 * 3 2 1 36 36 H 1.08993 * 109.47839 * 299.99931 * 6 4 3 37 37 H 1.09000 * 109.47160 * 60.00369 * 6 4 3 38 38 H 1.09002 * 109.46719 * 180.02562 * 6 4 3 39 39 H 1.09001 * 109.47096 * 295.00066 * 7 4 3 40 40 H 1.08994 * 109.47065 * 55.00225 * 7 4 3 41 41 H 1.08999 * 110.36338 * 322.92131 * 11 10 8 42 42 H 1.08995 * 110.36884 * 85.25248 * 11 10 8 43 43 H 1.08998 * 111.00750 * 81.05556 * 12 11 10 44 44 H 1.08991 * 111.00580 * 204.91288 * 12 11 10 45 45 H 1.00902 * 110.99848 * 322.49688 * 15 13 12 46 46 H 1.09000 * 109.46878 * 299.99363 * 16 15 13 47 47 H 1.08999 * 109.47072 * 59.99842 * 16 15 13 48 48 H 0.96999 * 120.00164 * 0.02562 * 19 17 16 49 49 H 0.96996 * 120.00312 * 180.02562 * 23 22 20 50 50 H 1.08995 * 109.47558 * 58.54543 * 30 28 10 51 51 H 1.09003 * 109.46630 * 178.54853 * 30 28 10 52 52 H 1.09003 * 109.46820 * 298.53813 * 30 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 1 3.8514 0.5683 0.8409 6 6 3.9950 0.5370 -1.3083 7 6 4.1572 2.5770 0.1251 8 6 5.6538 2.4495 0.2479 9 8 6.1720 1.3529 0.2365 10 7 6.4164 3.5539 0.3705 11 6 5.9202 4.9418 0.3994 12 6 7.1210 5.8021 -0.0673 13 6 8.3130 5.0530 0.5852 14 1 8.4399 5.3604 1.6232 15 7 9.5486 5.2791 -0.1766 16 6 10.2203 6.5094 0.2628 17 6 11.4810 6.7071 -0.5389 18 8 11.7898 5.9021 -1.3920 19 7 12.2654 7.7785 -0.3078 20 6 13.4125 7.9581 -1.0368 21 1 13.6874 7.2413 -1.7964 22 6 14.2209 9.0629 -0.7990 23 7 13.8862 9.9354 0.1249 24 14 15.7836 9.3081 -1.7927 25 1 15.9330 8.1940 -2.7631 26 1 15.7062 10.5965 -2.5270 27 1 16.9536 9.3288 -0.8783 28 6 7.8804 3.5738 0.5041 29 1 8.1771 3.0485 1.4119 30 6 8.5233 2.9126 -0.7168 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8901 34 1 1.6885 1.8463 0.8901 35 1 1.6885 1.8464 -0.8899 36 1 3.5521 -0.4548 -1.3980 37 1 3.6790 1.1535 -2.1499 38 1 5.0816 0.4506 -1.3086 39 1 3.9141 3.1648 -0.7600 40 1 3.7610 3.0732 1.0110 41 1 5.0808 5.0588 -0.2860 42 1 5.6261 5.2185 1.4118 43 1 7.2053 5.7986 -1.1540 44 1 7.0437 6.8203 0.3138 45 1 9.3628 5.3028 -1.1681 46 1 9.5559 7.3600 0.1114 47 1 10.4716 6.4283 1.3204 48 1 12.0187 8.4221 0.3747 49 1 14.4503 10.7068 0.2907 50 1 8.2162 3.4403 -1.6197 51 1 9.6085 2.9539 -0.6230 52 1 8.2033 1.8724 -0.7773 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001179821776.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:18:13 Heat of formation + Delta-G solvation = -142.952495 kcal Electronic energy + Delta-G solvation = -29890.959977 eV Core-core repulsion = 25696.372922 eV Total energy + Delta-G solvation = -4194.587055 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.46016 -40.17716 -39.40151 -38.68655 -36.17925 -35.63409 -35.50986 -33.25986 -32.31128 -31.69951 -29.03403 -28.20363 -27.95725 -26.50503 -26.33442 -25.30303 -23.88153 -21.94913 -21.13568 -20.80955 -19.91540 -19.83345 -18.39675 -17.67707 -17.40071 -17.17331 -16.93114 -16.76499 -16.37449 -16.30126 -16.03570 -15.78246 -15.50575 -15.24282 -15.00690 -14.64561 -14.30415 -14.18465 -13.90081 -13.83517 -13.65986 -13.48372 -13.41153 -13.19110 -13.11499 -12.97480 -12.92915 -12.66770 -12.46156 -12.41701 -12.38704 -12.11708 -12.05712 -11.87937 -11.78537 -11.68966 -11.60231 -11.49771 -10.65797 -10.56626 -10.31781 -9.99209 -9.61951 -9.24837 -8.45721 -5.93760 1.36981 1.42674 1.56232 1.69145 1.91886 2.08247 2.30386 2.87239 2.95853 3.22168 3.41875 3.51758 3.68456 3.82150 3.90193 4.05079 4.10038 4.18707 4.21979 4.34726 4.38140 4.47723 4.48542 4.49562 4.50806 4.54410 4.59554 4.62097 4.64249 4.70542 4.73675 4.77106 4.82470 4.88629 4.94199 5.02537 5.09500 5.11779 5.14886 5.32156 5.39786 5.42425 5.42799 5.48459 5.91756 6.13242 6.29333 6.38327 6.60703 6.62572 7.14969 7.24252 7.59094 8.14935 8.71752 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.039785 B = 0.001620 C = 0.001588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.619990 B =17284.122920 C =17626.225804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.420 6.420 3 C 0.068 3.932 4 C -0.073 4.073 5 H 0.061 0.939 6 C -0.144 4.144 7 C -0.120 4.120 8 C 0.521 3.479 9 O -0.577 6.577 10 N -0.616 5.616 11 C 0.102 3.898 12 C -0.161 4.161 13 C 0.086 3.914 14 H 0.109 0.891 15 N -0.671 5.671 16 C 0.068 3.932 17 C 0.437 3.563 18 O -0.625 6.625 19 N -0.573 5.573 20 C -0.333 4.333 21 H 0.077 0.923 22 C -0.011 4.011 23 N -0.919 5.919 24 Si 0.990 3.010 25 H -0.275 1.275 26 H -0.270 1.270 27 H -0.272 1.272 28 C 0.145 3.855 29 H 0.063 0.937 30 C -0.140 4.140 31 H 0.051 0.949 32 H 0.090 0.910 33 H 0.052 0.948 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.048 0.952 37 H 0.059 0.941 38 H 0.047 0.953 39 H 0.119 0.881 40 H 0.123 0.877 41 H 0.102 0.898 42 H 0.095 0.905 43 H 0.070 0.930 44 H 0.107 0.893 45 H 0.347 0.653 46 H 0.075 0.925 47 H 0.106 0.894 48 H 0.397 0.603 49 H 0.277 0.723 50 H 0.047 0.953 51 H 0.064 0.936 52 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.371 -7.473 4.013 30.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.340 6.340 3 C -0.009 4.009 4 C -0.092 4.092 5 H 0.079 0.921 6 C -0.202 4.202 7 C -0.160 4.160 8 C 0.312 3.688 9 O -0.457 6.457 10 N -0.351 5.351 11 C -0.020 4.020 12 C -0.201 4.201 13 C -0.025 4.025 14 H 0.127 0.873 15 N -0.303 5.303 16 C -0.064 4.064 17 C 0.224 3.776 18 O -0.511 6.511 19 N -0.210 5.210 20 C -0.463 4.463 21 H 0.095 0.905 22 C -0.210 4.210 23 N -0.560 5.560 24 Si 0.814 3.186 25 H -0.200 1.200 26 H -0.195 1.195 27 H -0.197 1.197 28 C 0.041 3.959 29 H 0.081 0.919 30 C -0.199 4.199 31 H 0.070 0.930 32 H 0.108 0.892 33 H 0.071 0.929 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.067 0.933 37 H 0.078 0.922 38 H 0.066 0.934 39 H 0.137 0.863 40 H 0.141 0.859 41 H 0.120 0.880 42 H 0.113 0.887 43 H 0.089 0.911 44 H 0.125 0.875 45 H 0.167 0.833 46 H 0.093 0.907 47 H 0.124 0.876 48 H 0.231 0.769 49 H 0.087 0.913 50 H 0.067 0.933 51 H 0.082 0.918 52 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -28.346 -9.039 3.895 30.006 hybrid contribution 0.467 1.092 -0.560 1.313 sum -27.878 -7.948 3.334 29.180 Atomic orbital electron populations 1.22898 0.79554 1.03563 1.00975 1.87856 1.21357 1.29116 1.95627 1.22623 0.92114 0.84433 1.01687 1.20778 0.93559 0.95667 0.99232 0.92094 1.21807 1.01223 1.00585 0.96548 1.21628 0.89033 0.98610 1.06702 1.20901 0.90306 0.82425 0.75205 1.90683 1.75815 1.27440 1.51785 1.48728 1.06758 1.07407 1.72158 1.22523 0.97380 0.78678 1.03415 1.23552 0.94713 1.00594 1.01209 1.22631 0.87697 0.92962 0.99241 0.87284 1.59979 1.24323 1.36425 1.09545 1.21540 0.92460 0.92672 0.99707 1.20973 0.87589 0.82330 0.86683 1.90508 1.75776 1.46393 1.38472 1.41917 1.21287 1.22689 1.35149 1.19678 1.00470 1.08610 1.17522 0.90539 1.25967 1.02144 0.94919 0.98007 1.69662 1.40296 1.13256 1.32774 0.84919 0.77516 0.78179 0.78019 1.20008 1.19534 1.19728 1.21340 0.80062 0.96457 0.98067 0.91906 1.21772 1.01273 0.99531 0.97295 0.93036 0.89193 0.92949 0.91422 0.91628 0.93309 0.92172 0.93357 0.86321 0.85878 0.87963 0.88655 0.91110 0.87489 0.83305 0.90686 0.87639 0.76878 0.91335 0.93345 0.91751 0.93952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 113.37 1.25 1.50 16 2 O -0.42 -7.04 10.24 -148.98 -1.53 -8.56 16 3 C 0.07 0.81 5.32 71.98 0.38 1.19 16 4 C -0.07 -1.19 2.27 -10.79 -0.02 -1.22 16 5 H 0.06 1.31 7.95 -2.39 -0.02 1.29 16 6 C -0.14 -2.89 8.83 71.98 0.64 -2.25 16 7 C -0.12 -1.43 4.18 29.85 0.12 -1.30 16 8 C 0.52 10.98 7.35 87.66 0.64 11.62 16 9 O -0.58 -17.63 12.85 -3.06 -0.04 -17.67 16 10 N -0.62 -11.38 3.08 -788.04 -2.43 -13.81 16 11 C 0.10 1.03 6.69 86.86 0.58 1.61 16 12 C -0.16 -2.19 6.64 31.99 0.21 -1.98 16 13 C 0.09 1.72 3.10 46.11 0.14 1.86 16 14 H 0.11 1.90 7.89 -2.39 -0.02 1.88 16 15 N -0.67 -19.28 4.51 -489.41 -2.21 -21.49 16 16 C 0.07 2.11 6.02 85.56 0.52 2.62 16 17 C 0.44 20.02 7.82 87.66 0.69 20.71 16 18 O -0.63 -34.14 15.78 -3.07 -0.05 -34.18 16 19 N -0.57 -28.58 5.29 -306.98 -1.62 -30.21 16 20 C -0.33 -18.73 9.68 84.04 0.81 -17.92 16 21 H 0.08 4.64 7.16 -2.91 -0.02 4.61 16 22 C -0.01 -0.56 5.50 84.93 0.47 -0.09 16 23 N -0.92 -48.68 13.05 21.66 0.28 -48.40 16 24 Si 0.99 42.67 29.55 68.60 2.03 44.70 16 25 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 26 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 27 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 28 C 0.14 3.40 3.49 45.34 0.16 3.56 16 29 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 30 C -0.14 -4.04 8.19 71.98 0.59 -3.45 16 31 H 0.05 0.37 8.14 -2.39 -0.02 0.35 16 32 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.05 0.36 8.14 -2.38 -0.02 0.34 16 34 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 35 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 36 H 0.05 1.05 7.82 -2.39 -0.02 1.03 16 37 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.05 1.25 5.95 -2.39 -0.01 1.23 16 39 H 0.12 0.86 7.85 -2.39 -0.02 0.84 16 40 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.10 0.56 7.48 -2.39 -0.02 0.54 16 42 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 43 H 0.07 1.13 7.81 -2.39 -0.02 1.11 16 44 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.35 10.80 7.24 -89.69 -0.65 10.15 16 46 H 0.08 1.90 8.13 -2.39 -0.02 1.88 16 47 H 0.11 2.91 8.08 -2.39 -0.02 2.89 16 48 H 0.40 18.61 7.90 -92.71 -0.73 17.88 16 49 H 0.28 13.73 8.31 -92.71 -0.77 12.96 16 50 H 0.05 1.35 7.84 -2.39 -0.02 1.33 16 51 H 0.06 2.11 7.45 -2.39 -0.02 2.09 16 52 H 0.04 1.35 6.74 -2.39 -0.02 1.34 16 Total: -1.00 -76.15 414.79 1.15 -75.00 By element: Atomic # 1 Polarization: 38.62 SS G_CDS: -0.46 Total: 38.15 kcal Atomic # 6 Polarization: 9.30 SS G_CDS: 7.18 Total: 16.47 kcal Atomic # 7 Polarization: -107.93 SS G_CDS: -5.97 Total: -113.90 kcal Atomic # 8 Polarization: -58.81 SS G_CDS: -1.61 Total: -60.42 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Total: -76.15 1.15 -75.00 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179821776.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.953 kcal (2) G-P(sol) polarization free energy of solvation -76.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds