Wall clock time and date at job start Wed Apr 1 2020 01:18:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42899 * 114.00285 * 2 1 4 4 C 1.52992 * 109.47225 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47283 * 180.02562 * 4 3 2 6 6 H 1.09005 * 109.47257 * 304.99959 * 5 4 3 7 7 C 1.53004 * 109.47271 * 65.00008 * 5 4 3 8 8 C 1.50698 * 109.47409 * 185.00138 * 5 4 3 9 9 O 1.21282 * 120.00056 * 359.97438 * 8 5 4 10 10 N 1.34778 * 120.00123 * 180.02562 * 8 5 4 11 11 C 1.47431 * 125.64892 * 0.02562 * 10 8 5 12 12 C 1.54904 * 104.82982 * 204.09169 * 11 10 8 13 13 C 1.55157 * 101.58535 * 322.98739 * 12 11 10 14 14 H 1.09002 * 110.72052 * 276.96517 * 13 12 11 15 15 N 1.46904 * 110.72253 * 153.86558 * 13 12 11 16 16 C 1.46899 * 110.99698 * 79.69346 * 15 13 12 17 17 C 1.50706 * 109.47074 * 180.02562 * 16 15 13 18 18 O 1.21292 * 119.99628 * 359.97438 * 17 16 15 19 19 N 1.34772 * 119.99905 * 180.02562 * 17 16 15 20 20 C 1.37099 * 119.99883 * 179.97438 * 19 17 16 21 21 H 1.08004 * 119.99664 * 359.97438 * 20 19 17 22 22 C 1.38944 * 120.00119 * 179.97438 * 20 19 17 23 23 N 1.31411 * 120.00104 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00091 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47084 * 270.00397 * 24 22 20 26 26 H 1.48500 * 109.47285 * 29.99935 * 24 22 20 27 27 H 1.48504 * 109.47387 * 150.00208 * 24 22 20 28 28 C 1.47320 * 125.61464 * 179.79556 * 10 8 5 29 29 H 1.08997 * 110.06541 * 298.32332 * 28 10 8 30 30 C 1.52997 * 109.84923 * 59.58357 * 28 10 8 31 31 H 1.09004 * 109.47267 * 299.99995 * 1 2 3 32 32 H 1.08997 * 109.47075 * 59.99727 * 1 2 3 33 33 H 1.09000 * 109.47621 * 180.02562 * 1 2 3 34 34 H 1.09006 * 109.46717 * 59.99731 * 3 2 1 35 35 H 1.08996 * 109.47127 * 300.00376 * 3 2 1 36 36 H 1.08997 * 109.47325 * 60.00142 * 4 3 2 37 37 H 1.09008 * 109.47249 * 299.99934 * 4 3 2 38 38 H 1.09002 * 109.46768 * 300.00255 * 7 5 4 39 39 H 1.08993 * 109.47311 * 60.00164 * 7 5 4 40 40 H 1.08996 * 109.47042 * 180.02562 * 7 5 4 41 41 H 1.08991 * 110.36683 * 85.25210 * 11 10 8 42 42 H 1.09005 * 110.45500 * 322.97691 * 11 10 8 43 43 H 1.09004 * 111.00533 * 204.91279 * 12 11 10 44 44 H 1.09002 * 111.04127 * 81.07952 * 12 11 10 45 45 H 1.00896 * 111.00385 * 203.64817 * 15 13 12 46 46 H 1.09000 * 109.47159 * 60.00382 * 16 15 13 47 47 H 1.09006 * 109.47346 * 300.00148 * 16 15 13 48 48 H 0.96995 * 120.00048 * 359.97438 * 19 17 16 49 49 H 0.97001 * 120.00490 * 179.97438 * 23 22 20 50 50 H 1.09003 * 109.47575 * 183.55432 * 30 28 10 51 51 H 1.09001 * 109.47427 * 303.55565 * 30 28 10 52 52 H 1.09004 * 109.47060 * 63.55359 * 30 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 6 4.1578 2.5822 0.0013 6 1 3.7675 3.1542 -0.8406 7 6 3.8078 3.2958 1.3087 8 6 5.6552 2.4655 -0.1219 9 8 6.1736 1.3720 -0.2019 10 7 6.4183 3.5762 -0.1423 11 6 5.9220 4.9615 -0.0520 12 6 7.0226 5.8214 -0.7220 13 6 8.3118 5.0896 -0.2639 14 1 8.6051 5.4137 0.7347 15 7 9.4034 5.3111 -1.2217 16 6 10.0249 6.6262 -1.0166 17 6 11.1373 6.8174 -2.0153 18 8 11.3879 5.9438 -2.8185 19 7 11.8542 7.9586 -2.0152 20 6 12.8664 8.1323 -2.9234 21 1 13.0895 7.3544 -3.6386 22 6 13.6052 9.3091 -2.9236 23 7 13.3340 10.2554 -2.0531 24 14 14.9848 9.5455 -4.1606 25 1 16.2571 9.0390 -3.5859 26 1 14.6698 8.7954 -5.4029 27 1 15.1246 10.9898 -4.4763 28 6 7.8870 3.6060 -0.2536 29 1 8.3371 3.0974 0.5990 30 6 8.3231 2.9309 -1.5555 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3634 -1.0276 0.0005 34 1 1.6886 1.8463 0.8900 35 1 1.6886 1.8464 -0.8899 36 1 3.8574 0.6435 -0.8891 37 1 3.8567 0.6438 0.8909 38 1 2.7247 3.3803 1.3978 39 1 4.1980 2.7240 2.1505 40 1 4.2508 4.2917 1.3089 41 1 5.7960 5.2520 0.9909 42 1 4.9798 5.0644 -0.5903 43 1 7.0005 6.8450 -0.3480 44 1 6.9273 5.8023 -1.8077 45 1 10.0899 4.5738 -1.1644 46 1 10.4297 6.6832 -0.0061 47 1 9.2766 7.4070 -1.1528 48 1 11.6540 8.6571 -1.3726 49 1 13.8500 11.0768 -2.0530 50 1 9.4117 2.9000 -1.6019 51 1 7.9291 1.9151 -1.5877 52 1 7.9392 3.4966 -2.4044 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180175048.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:18:30 Heat of formation + Delta-G solvation = -140.886106 kcal Electronic energy + Delta-G solvation = -29993.969147 eV Core-core repulsion = 25799.471697 eV Total energy + Delta-G solvation = -4194.497450 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.57624 -40.17999 -39.29112 -38.69301 -36.22758 -35.96466 -35.46101 -33.26189 -32.31402 -31.70574 -29.93876 -28.22561 -27.24527 -26.51727 -26.01744 -25.31704 -24.04311 -22.28911 -21.07108 -20.76598 -19.99047 -19.87890 -18.26883 -17.75385 -17.43517 -17.20528 -17.02942 -16.87381 -16.57058 -16.33949 -15.95663 -15.73582 -15.54774 -15.29631 -15.04400 -14.75834 -14.43511 -14.24520 -13.99390 -13.93736 -13.54473 -13.46618 -13.33726 -13.25986 -13.11825 -12.88693 -12.72177 -12.68012 -12.55270 -12.43717 -12.40208 -12.12185 -12.03928 -11.92834 -11.85318 -11.73604 -11.60990 -11.49386 -10.72716 -10.55104 -10.32078 -9.99621 -9.68699 -9.33786 -8.45706 -5.93924 1.38359 1.42526 1.54700 1.62177 1.85238 2.07932 2.30178 2.83537 2.94413 3.22018 3.31462 3.52517 3.64509 3.68492 3.88265 4.00090 4.06660 4.23715 4.27247 4.30962 4.32383 4.33109 4.42538 4.45306 4.47856 4.53584 4.56726 4.57886 4.62375 4.65711 4.69569 4.77953 4.86775 4.88594 4.94617 5.00584 5.04374 5.06842 5.21932 5.28243 5.32817 5.35831 5.42275 5.43045 5.90454 6.12017 6.26521 6.33537 6.54678 6.62164 7.14568 7.15392 7.58641 8.14505 8.71528 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.035969 B = 0.001655 C = 0.001626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.255229 B =16912.036391 C =17215.969596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.425 6.425 3 C 0.063 3.937 4 C -0.097 4.097 5 C -0.094 4.094 6 H 0.121 0.879 7 C -0.150 4.150 8 C 0.526 3.474 9 O -0.585 6.585 10 N -0.610 5.610 11 C 0.098 3.902 12 C -0.122 4.122 13 C 0.080 3.920 14 H 0.075 0.925 15 N -0.668 5.668 16 C 0.067 3.933 17 C 0.437 3.563 18 O -0.625 6.625 19 N -0.572 5.572 20 C -0.334 4.334 21 H 0.077 0.923 22 C -0.010 4.010 23 N -0.918 5.918 24 Si 0.990 3.010 25 H -0.272 1.272 26 H -0.275 1.275 27 H -0.270 1.270 28 C 0.139 3.861 29 H 0.067 0.933 30 C -0.141 4.141 31 H 0.054 0.946 32 H 0.051 0.949 33 H 0.091 0.909 34 H 0.073 0.927 35 H 0.064 0.936 36 H 0.052 0.948 37 H 0.058 0.942 38 H 0.091 0.909 39 H 0.050 0.950 40 H 0.085 0.915 41 H 0.099 0.901 42 H 0.103 0.897 43 H 0.105 0.895 44 H 0.071 0.929 45 H 0.344 0.656 46 H 0.069 0.931 47 H 0.110 0.890 48 H 0.397 0.603 49 H 0.277 0.723 50 H 0.060 0.940 51 H 0.045 0.955 52 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.755 -8.095 10.936 30.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.345 6.345 3 C -0.013 4.013 4 C -0.135 4.135 5 C -0.115 4.115 6 H 0.139 0.861 7 C -0.207 4.207 8 C 0.316 3.684 9 O -0.465 6.465 10 N -0.343 5.343 11 C -0.023 4.023 12 C -0.161 4.161 13 C -0.030 4.030 14 H 0.093 0.907 15 N -0.302 5.302 16 C -0.065 4.065 17 C 0.225 3.775 18 O -0.511 6.511 19 N -0.210 5.210 20 C -0.464 4.464 21 H 0.095 0.905 22 C -0.210 4.210 23 N -0.559 5.559 24 Si 0.814 3.186 25 H -0.197 1.197 26 H -0.200 1.200 27 H -0.195 1.195 28 C 0.035 3.965 29 H 0.086 0.914 30 C -0.200 4.200 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.109 0.891 34 H 0.091 0.909 35 H 0.082 0.918 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.109 0.891 39 H 0.070 0.930 40 H 0.103 0.897 41 H 0.117 0.883 42 H 0.122 0.878 43 H 0.124 0.876 44 H 0.089 0.911 45 H 0.165 0.835 46 H 0.086 0.914 47 H 0.128 0.872 48 H 0.231 0.769 49 H 0.087 0.913 50 H 0.079 0.921 51 H 0.064 0.936 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -26.581 -9.060 9.904 29.778 hybrid contribution 1.492 0.263 0.256 1.536 sum -25.090 -8.797 10.160 28.462 Atomic orbital electron populations 1.22920 0.79322 1.03684 1.01106 1.87848 1.21663 1.29343 1.95673 1.22647 0.92378 0.84385 1.01887 1.21202 0.93931 0.95673 1.02687 1.21161 0.88996 0.98244 1.03074 0.86086 1.22022 1.03940 1.01062 0.93714 1.20924 0.90197 0.82331 0.74951 1.90689 1.75828 1.28079 1.51927 1.48652 1.06438 1.07277 1.71949 1.22734 0.98458 0.78665 1.02465 1.22912 0.91892 0.99731 1.01521 1.22618 0.92551 0.93288 0.94586 0.90688 1.60287 1.14321 1.02999 1.52615 1.21556 0.95023 0.93868 0.96054 1.20936 0.85808 0.82825 0.87967 1.90506 1.72120 1.44353 1.44139 1.41906 1.30404 1.16496 1.32185 1.19646 1.10888 1.02680 1.13196 0.90529 1.25968 1.00868 0.94607 0.99561 1.69658 1.42118 1.07572 1.36592 0.84974 0.77888 0.77734 0.78024 1.19740 1.19987 1.19473 1.21518 0.81215 0.95960 0.97782 0.91450 1.21798 1.01154 0.99706 0.97324 0.92704 0.93016 0.89084 0.90894 0.91793 0.92887 0.92311 0.89074 0.93042 0.89667 0.88284 0.87842 0.87640 0.91059 0.83522 0.91357 0.87174 0.76882 0.91317 0.92149 0.93635 0.92685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 113.37 1.25 1.50 16 2 O -0.43 -7.54 10.70 -148.98 -1.59 -9.14 16 3 C 0.06 0.80 5.69 71.98 0.41 1.21 16 4 C -0.10 -1.70 4.40 30.59 0.13 -1.57 16 5 C -0.09 -1.29 2.08 -11.54 -0.02 -1.31 16 6 H 0.12 1.14 7.85 -2.38 -0.02 1.12 16 7 C -0.15 -1.21 8.76 71.98 0.63 -0.58 16 8 C 0.53 11.83 7.00 87.66 0.61 12.44 16 9 O -0.59 -18.84 14.75 -3.04 -0.04 -18.89 16 10 N -0.61 -11.81 3.08 -787.35 -2.43 -14.24 16 11 C 0.10 1.11 5.13 86.85 0.45 1.56 16 12 C -0.12 -1.92 6.37 31.98 0.20 -1.71 16 13 C 0.08 1.65 3.08 46.10 0.14 1.79 16 14 H 0.08 1.32 8.00 -2.39 -0.02 1.30 16 15 N -0.67 -19.49 5.04 -489.41 -2.47 -21.96 16 16 C 0.07 2.10 6.02 85.56 0.52 2.62 16 17 C 0.44 20.14 7.82 87.66 0.69 20.82 16 18 O -0.62 -34.22 15.78 -3.07 -0.05 -34.27 16 19 N -0.57 -28.64 5.29 -306.98 -1.62 -30.26 16 20 C -0.33 -18.82 9.68 84.04 0.81 -18.01 16 21 H 0.08 4.63 7.16 -2.91 -0.02 4.61 16 22 C -0.01 -0.53 5.50 84.93 0.47 -0.07 16 23 N -0.92 -48.66 13.05 21.66 0.28 -48.38 16 24 Si 0.99 42.66 29.55 68.60 2.03 44.69 16 25 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 26 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 27 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 28 C 0.14 3.24 3.44 45.28 0.16 3.39 16 29 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 30 C -0.14 -4.04 8.32 71.98 0.60 -3.45 16 31 H 0.05 0.38 8.14 -2.38 -0.02 0.36 16 32 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 33 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.07 0.61 6.56 -2.38 -0.02 0.60 16 35 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.05 1.21 7.96 -2.39 -0.02 1.19 16 37 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 38 H 0.09 0.36 6.56 -2.39 -0.02 0.34 16 39 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 40 H 0.08 0.44 4.99 -2.39 -0.01 0.43 16 41 H 0.10 0.67 7.07 -2.39 -0.02 0.65 16 42 H 0.10 0.72 7.36 -2.38 -0.02 0.70 16 43 H 0.11 1.23 8.14 -2.38 -0.02 1.21 16 44 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 45 H 0.34 11.13 6.67 -89.70 -0.60 10.53 16 46 H 0.07 1.84 8.11 -2.39 -0.02 1.82 16 47 H 0.11 2.97 7.87 -2.38 -0.02 2.95 16 48 H 0.40 18.66 7.90 -92.71 -0.73 17.93 16 49 H 0.28 13.77 8.31 -92.71 -0.77 13.00 16 50 H 0.06 1.79 6.71 -2.39 -0.02 1.77 16 51 H 0.04 1.44 6.60 -2.39 -0.02 1.43 16 52 H 0.05 1.68 8.11 -2.38 -0.02 1.66 16 Total: -1.00 -76.70 409.93 0.75 -75.95 By element: Atomic # 1 Polarization: 38.25 SS G_CDS: -0.40 Total: 37.85 kcal Atomic # 6 Polarization: 11.60 SS G_CDS: 7.04 Total: 18.64 kcal Atomic # 7 Polarization: -108.61 SS G_CDS: -6.23 Total: -114.84 kcal Atomic # 8 Polarization: -60.61 SS G_CDS: -1.69 Total: -62.29 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.69 kcal Total: -76.70 0.75 -75.95 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180175048.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.932 kcal (2) G-P(sol) polarization free energy of solvation -76.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds