Wall clock time and date at job start Wed Apr 1 2020 01:20:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42902 * 113.99682 * 2 1 4 4 C 1.52999 * 109.47298 * 180.02562 * 3 2 1 5 5 C 1.50695 * 109.47444 * 179.97438 * 4 3 2 6 6 O 1.21280 * 119.99914 * 0.02562 * 5 4 3 7 7 N 1.34773 * 120.00379 * 179.97438 * 5 4 3 8 8 C 1.48146 * 127.83615 * 0.02628 * 7 5 4 9 9 C 1.54386 * 104.61887 * 140.42195 * 8 7 5 10 10 H 1.08999 * 110.34357 * 142.73657 * 9 8 7 11 11 C 1.53001 * 110.42790 * 264.95001 * 9 8 7 12 12 C 1.54286 * 104.96032 * 23.86581 * 9 8 7 13 13 C 1.53004 * 110.33856 * 241.02646 * 12 9 8 14 14 C 1.53000 * 110.34019 * 118.87401 * 12 9 8 15 15 N 1.46901 * 109.46855 * 181.47185 * 14 12 9 16 16 C 1.46898 * 111.00189 * 179.97438 * 15 14 12 17 17 C 1.50696 * 109.47176 * 180.02562 * 16 15 14 18 18 O 1.21288 * 120.00279 * 0.02562 * 17 16 15 19 19 N 1.34777 * 119.99735 * 179.97438 * 17 16 15 20 20 C 1.37105 * 119.99904 * 179.97438 * 19 17 16 21 21 H 1.07991 * 119.99780 * 0.02562 * 20 19 17 22 22 C 1.38954 * 119.99815 * 179.72596 * 20 19 17 23 23 N 1.31412 * 119.99962 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99686 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.46850 * 90.00463 * 24 22 20 26 26 H 1.48504 * 109.47159 * 210.00116 * 24 22 20 27 27 H 1.48497 * 109.47216 * 330.00562 * 24 22 20 28 28 C 1.48310 * 127.77240 * 179.97438 * 7 5 4 29 29 H 1.09003 * 109.46922 * 299.99632 * 1 2 3 30 30 H 1.08994 * 109.47068 * 59.99942 * 1 2 3 31 31 H 1.09003 * 109.46369 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47249 * 59.99871 * 3 2 1 33 33 H 1.09007 * 109.47177 * 299.99851 * 3 2 1 34 34 H 1.08997 * 109.47287 * 59.99635 * 4 3 2 35 35 H 1.09000 * 109.46998 * 300.00112 * 4 3 2 36 36 H 1.08999 * 110.41066 * 21.63235 * 8 7 5 37 37 H 1.09007 * 110.40477 * 259.20578 * 8 7 5 38 38 H 1.09003 * 109.46907 * 175.59097 * 11 9 8 39 39 H 1.09001 * 109.47347 * 295.58625 * 11 9 8 40 40 H 1.08993 * 109.47282 * 55.58751 * 11 9 8 41 41 H 1.09001 * 109.47320 * 298.51892 * 13 12 9 42 42 H 1.08995 * 109.47472 * 58.52958 * 13 12 9 43 43 H 1.09001 * 109.46684 * 178.52629 * 13 12 9 44 44 H 1.08998 * 109.47488 * 61.47386 * 14 12 9 45 45 H 1.08993 * 109.47041 * 301.47014 * 14 12 9 46 46 H 1.00907 * 110.99760 * 56.04664 * 15 14 12 47 47 H 1.09000 * 109.46741 * 60.00112 * 16 15 14 48 48 H 1.09002 * 109.46898 * 300.00102 * 16 15 14 49 49 H 0.97005 * 120.00189 * 0.02562 * 19 17 16 50 50 H 0.97000 * 119.99308 * 179.97438 * 23 22 20 51 51 H 1.09008 * 110.38489 * 100.78864 * 28 7 5 52 52 H 1.08995 * 110.51022 * 338.30683 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 6 4.1483 2.5615 -0.0013 6 8 3.4354 3.5427 -0.0008 7 7 5.4886 2.7025 -0.0014 8 6 6.5148 1.6340 -0.0015 9 6 7.6151 2.1505 -0.9534 10 1 8.6006 1.8731 -0.5793 11 6 7.4062 1.5938 -2.3631 12 6 7.4537 3.6849 -0.9533 13 6 7.1336 4.1861 -2.3630 14 6 8.7259 4.3534 -0.4282 15 7 8.5388 5.8103 -0.4031 16 6 9.7427 6.4871 0.0974 17 6 9.5134 7.9765 0.1093 18 8 8.4514 8.4296 -0.2621 19 7 10.4881 8.8049 0.5336 20 6 10.2796 10.1600 0.5440 21 1 9.3343 10.5634 0.2125 22 6 11.2825 11.0138 0.9868 23 7 12.4308 10.5225 1.3952 24 14 10.9982 12.8600 1.0016 25 1 10.4217 13.2615 2.3098 26 1 12.2906 13.5615 0.7940 27 1 10.0565 13.2246 -0.0872 28 6 6.2694 3.9635 -0.0025 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3632 -1.0277 0.0005 32 1 1.6885 1.8464 0.8899 33 1 1.6886 1.8464 -0.8900 34 1 3.8567 0.6441 -0.8908 35 1 3.8574 0.6438 0.8891 36 1 6.0932 0.7021 -0.3781 37 1 6.9161 1.4924 1.0021 38 1 8.1430 2.0288 -3.0384 39 1 7.5232 0.5102 -2.3469 40 1 6.4035 1.8458 -2.7083 41 1 7.9566 3.9371 -3.0328 42 1 6.2192 3.7112 -2.7186 43 1 6.9968 5.2673 -2.3418 44 1 9.5626 4.1058 -1.0813 45 1 8.9341 3.9964 0.5803 46 1 7.7292 6.0615 0.1443 47 1 10.5867 6.2542 -0.5518 48 1 9.9576 6.1448 1.1097 49 1 11.3373 8.4426 0.8310 50 1 13.1310 11.1186 1.7040 51 1 6.6319 4.1865 1.0011 52 1 5.6640 4.7872 -0.3806 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180333692.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:20:46 Heat of formation + Delta-G solvation = -118.052373 kcal Electronic energy + Delta-G solvation = -30111.315588 eV Core-core repulsion = 25917.808284 eV Total energy + Delta-G solvation = -4193.507305 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.76176 -39.01556 -38.20196 -37.89447 -35.45602 -33.92083 -33.35547 -32.18768 -31.28740 -30.93485 -28.02304 -27.49265 -26.63432 -25.96210 -25.17844 -23.83596 -23.29598 -21.64864 -19.60692 -19.35284 -18.73503 -17.89942 -17.62113 -16.88899 -16.44223 -16.29126 -15.73733 -15.67269 -15.42199 -15.01552 -14.82600 -14.69382 -14.45054 -14.12273 -14.03381 -13.66950 -13.49288 -13.27077 -13.15850 -13.10250 -12.56748 -12.39683 -12.29940 -12.13592 -11.93707 -11.81567 -11.64897 -11.57532 -11.51606 -11.48678 -11.39132 -11.02960 -10.75347 -10.67870 -10.54150 -10.38293 -10.20435 -10.08870 -10.06865 -9.49716 -8.95480 -8.45204 -8.04977 -7.94606 -6.40794 -3.81404 2.37239 2.52462 3.18850 3.27430 3.33729 3.44474 3.91919 3.98644 4.18984 4.19988 4.33394 4.47201 4.58983 4.65237 4.74812 4.89900 4.95212 4.97031 4.97896 5.01754 5.08954 5.17983 5.20243 5.20961 5.26807 5.27713 5.38767 5.40934 5.43195 5.52186 5.56186 5.64256 5.68847 5.73636 5.76753 5.86015 5.87286 5.94330 5.97809 6.14073 6.22224 6.27564 6.51203 6.71382 7.19911 7.28804 7.56427 7.63620 7.89050 8.07667 8.62530 9.19218 9.55574 10.07176 10.76965 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.018628 B = 0.001872 C = 0.001754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.755187 B =14955.485083 C =15960.097757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.397 6.397 3 C 0.075 3.925 4 C -0.134 4.134 5 C 0.537 3.463 6 O -0.539 6.539 7 N -0.620 5.620 8 C 0.102 3.898 9 C -0.099 4.099 10 H 0.088 0.912 11 C -0.143 4.143 12 C -0.065 4.065 13 C -0.129 4.129 14 C 0.073 3.927 15 N -0.666 5.666 16 C 0.051 3.949 17 C 0.441 3.559 18 O -0.582 6.582 19 N -0.564 5.564 20 C -0.299 4.299 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.930 3.070 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.269 1.269 28 C 0.111 3.889 29 H 0.043 0.957 30 H 0.043 0.957 31 H 0.086 0.914 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.101 0.899 35 H 0.100 0.900 36 H 0.081 0.919 37 H 0.074 0.926 38 H 0.064 0.936 39 H 0.052 0.948 40 H 0.058 0.942 41 H 0.057 0.943 42 H 0.048 0.952 43 H 0.074 0.926 44 H 0.076 0.924 45 H 0.029 0.971 46 H 0.348 0.652 47 H 0.086 0.914 48 H 0.042 0.958 49 H 0.392 0.608 50 H 0.271 0.729 51 H 0.069 0.931 52 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.981 -25.934 -2.813 28.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.316 6.316 3 C -0.002 4.002 4 C -0.174 4.174 5 C 0.326 3.674 6 O -0.416 6.416 7 N -0.354 5.354 8 C -0.021 4.021 9 C -0.119 4.119 10 H 0.107 0.893 11 C -0.201 4.201 12 C -0.067 4.067 13 C -0.186 4.186 14 C -0.057 4.057 15 N -0.299 5.299 16 C -0.082 4.082 17 C 0.226 3.774 18 O -0.466 6.466 19 N -0.201 5.201 20 C -0.429 4.429 21 H 0.121 0.879 22 C -0.179 4.179 23 N -0.544 5.544 24 Si 0.757 3.243 25 H -0.205 1.205 26 H -0.209 1.209 27 H -0.194 1.194 28 C -0.011 4.011 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.105 0.895 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.100 0.900 37 H 0.092 0.908 38 H 0.083 0.917 39 H 0.071 0.929 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.067 0.933 43 H 0.093 0.907 44 H 0.094 0.906 45 H 0.047 0.953 46 H 0.168 0.832 47 H 0.104 0.896 48 H 0.060 0.940 49 H 0.225 0.775 50 H 0.081 0.919 51 H 0.088 0.912 52 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -12.763 -25.077 -3.650 28.374 hybrid contribution 0.466 0.668 1.293 1.528 sum -12.298 -24.409 -2.357 27.434 Atomic orbital electron populations 1.22742 0.80481 1.02753 1.00330 1.87788 1.20169 1.28010 1.95602 1.22173 0.91807 0.84216 1.01956 1.21428 0.95389 0.95068 1.05524 1.19974 0.80355 0.91050 0.76014 1.90755 1.59789 1.40949 1.50116 1.48947 1.04326 1.09111 1.72987 1.22550 0.88539 0.91146 0.99848 1.22169 0.98856 0.94587 0.96253 0.89324 1.21920 1.02463 0.99972 0.95703 1.21531 0.94395 0.93693 0.97040 1.21822 1.00472 1.02626 0.93729 1.22033 0.96477 0.88327 0.98830 1.60082 1.05440 1.04891 1.59482 1.21667 0.93809 0.94241 0.98461 1.19817 0.85848 0.87366 0.84377 1.90531 1.26471 1.77340 1.52242 1.41865 1.14672 1.06609 1.56965 1.19712 1.01590 0.81034 1.40528 0.87923 1.25254 0.94990 1.00700 0.96988 1.69614 1.04815 1.36247 1.43694 0.85859 0.77617 0.82044 0.78785 1.20453 1.20931 1.19406 1.22549 0.91944 0.87455 0.99197 0.93883 0.93866 0.89511 0.92281 0.92266 0.88095 0.88125 0.90031 0.90783 0.91693 0.92868 0.92277 0.92384 0.93283 0.90723 0.90556 0.95331 0.83216 0.89586 0.93963 0.77491 0.91913 0.91235 0.89026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.40 -3.60 10.70 -35.23 -0.38 -3.98 16 3 C 0.08 0.69 5.23 37.16 0.19 0.88 16 4 C -0.13 -1.08 5.05 -27.89 -0.14 -1.22 16 5 C 0.54 6.08 7.91 -10.99 -0.09 5.99 16 6 O -0.54 -8.35 16.25 5.56 0.09 -8.26 16 7 N -0.62 -6.14 3.32 -169.16 -0.56 -6.70 16 8 C 0.10 0.69 6.47 -2.41 -0.02 0.67 16 9 C -0.10 -0.70 3.30 -89.22 -0.29 -1.00 16 10 H 0.09 0.54 7.71 -51.93 -0.40 0.14 16 11 C -0.14 -0.95 7.93 37.16 0.29 -0.65 16 12 C -0.07 -0.64 0.82 -153.10 -0.13 -0.77 16 13 C -0.13 -1.43 7.10 37.16 0.26 -1.17 16 14 C 0.07 0.81 4.35 -3.82 -0.02 0.79 16 15 N -0.67 -10.23 5.38 -115.06 -0.62 -10.85 16 16 C 0.05 0.87 6.17 -4.98 -0.03 0.84 16 17 C 0.44 10.36 7.82 -10.99 -0.09 10.28 16 18 O -0.58 -15.85 15.78 5.55 0.09 -15.76 16 19 N -0.56 -14.31 5.29 -10.96 -0.06 -14.37 16 20 C -0.30 -8.39 9.68 -14.93 -0.14 -8.54 16 21 H 0.10 3.03 7.16 -52.49 -0.38 2.66 16 22 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -24.57 13.05 55.50 0.72 -23.85 16 24 Si 0.93 21.21 29.55 -169.99 -5.02 16.19 16 25 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 26 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 27 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 28 C 0.11 1.25 5.17 -2.31 -0.01 1.24 16 29 H 0.04 0.25 8.14 -51.93 -0.42 -0.18 16 30 H 0.04 0.25 8.14 -51.93 -0.42 -0.18 16 31 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.57 8.10 -51.93 -0.42 0.15 16 33 H 0.06 0.57 8.10 -51.93 -0.42 0.15 16 34 H 0.10 0.67 7.95 -51.93 -0.41 0.26 16 35 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.08 0.41 7.03 -51.93 -0.36 0.04 16 37 H 0.07 0.43 8.14 -51.92 -0.42 0.01 16 38 H 0.06 0.45 6.84 -51.93 -0.36 0.10 16 39 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 40 H 0.06 0.45 6.76 -51.93 -0.35 0.10 16 41 H 0.06 0.60 6.89 -51.93 -0.36 0.24 16 42 H 0.05 0.53 6.71 -51.93 -0.35 0.18 16 43 H 0.07 1.04 7.62 -51.93 -0.40 0.64 16 44 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 45 H 0.03 0.29 8.12 -51.93 -0.42 -0.13 16 46 H 0.35 5.70 7.44 -39.29 -0.29 5.40 16 47 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 48 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 49 H 0.39 9.47 7.90 -40.82 -0.32 9.14 16 50 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 51 H 0.07 0.78 7.80 -51.92 -0.41 0.37 16 52 H 0.09 1.27 7.60 -51.93 -0.39 0.88 16 LS Contribution 415.47 15.07 6.26 6.26 Total: -1.00 -33.82 415.47 -7.64 -41.46 By element: Atomic # 1 Polarization: 19.67 SS G_CDS: -8.98 Total: 10.69 kcal Atomic # 6 Polarization: 8.36 SS G_CDS: 0.82 Total: 9.17 kcal Atomic # 7 Polarization: -55.25 SS G_CDS: -0.51 Total: -55.77 kcal Atomic # 8 Polarization: -27.80 SS G_CDS: -0.20 Total: -28.00 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -33.82 -7.64 -41.46 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180333692.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.591 kcal (2) G-P(sol) polarization free energy of solvation -33.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds