Wall clock time and date at job start Wed Apr 1 2020 01:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42902 * 113.99682 * 2 1 4 4 C 1.52999 * 109.47298 * 180.02562 * 3 2 1 5 5 C 1.50695 * 109.47444 * 179.97438 * 4 3 2 6 6 O 1.21280 * 119.99914 * 0.02562 * 5 4 3 7 7 N 1.34773 * 120.00379 * 179.97438 * 5 4 3 8 8 C 1.48146 * 127.83615 * 0.02628 * 7 5 4 9 9 C 1.54386 * 104.61887 * 140.42195 * 8 7 5 10 10 H 1.08999 * 110.34357 * 142.73657 * 9 8 7 11 11 C 1.53001 * 110.42790 * 264.95001 * 9 8 7 12 12 C 1.54286 * 104.96032 * 23.86581 * 9 8 7 13 13 C 1.53004 * 110.33856 * 241.02646 * 12 9 8 14 14 C 1.53000 * 110.34019 * 118.87401 * 12 9 8 15 15 N 1.46901 * 109.46855 * 181.47185 * 14 12 9 16 16 C 1.46898 * 111.00189 * 179.97438 * 15 14 12 17 17 C 1.50696 * 109.47176 * 180.02562 * 16 15 14 18 18 O 1.21288 * 120.00279 * 0.02562 * 17 16 15 19 19 N 1.34777 * 119.99735 * 179.97438 * 17 16 15 20 20 C 1.37105 * 119.99904 * 179.97438 * 19 17 16 21 21 H 1.07991 * 119.99780 * 0.02562 * 20 19 17 22 22 C 1.38954 * 119.99815 * 179.72596 * 20 19 17 23 23 N 1.31412 * 119.99962 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99686 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.46850 * 90.00463 * 24 22 20 26 26 H 1.48504 * 109.47159 * 210.00116 * 24 22 20 27 27 H 1.48497 * 109.47216 * 330.00562 * 24 22 20 28 28 C 1.48310 * 127.77240 * 179.97438 * 7 5 4 29 29 H 1.09003 * 109.46922 * 299.99632 * 1 2 3 30 30 H 1.08994 * 109.47068 * 59.99942 * 1 2 3 31 31 H 1.09003 * 109.46369 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47249 * 59.99871 * 3 2 1 33 33 H 1.09007 * 109.47177 * 299.99851 * 3 2 1 34 34 H 1.08997 * 109.47287 * 59.99635 * 4 3 2 35 35 H 1.09000 * 109.46998 * 300.00112 * 4 3 2 36 36 H 1.08999 * 110.41066 * 21.63235 * 8 7 5 37 37 H 1.09007 * 110.40477 * 259.20578 * 8 7 5 38 38 H 1.09003 * 109.46907 * 175.59097 * 11 9 8 39 39 H 1.09001 * 109.47347 * 295.58625 * 11 9 8 40 40 H 1.08993 * 109.47282 * 55.58751 * 11 9 8 41 41 H 1.09001 * 109.47320 * 298.51892 * 13 12 9 42 42 H 1.08995 * 109.47472 * 58.52958 * 13 12 9 43 43 H 1.09001 * 109.46684 * 178.52629 * 13 12 9 44 44 H 1.08998 * 109.47488 * 61.47386 * 14 12 9 45 45 H 1.08993 * 109.47041 * 301.47014 * 14 12 9 46 46 H 1.00907 * 110.99760 * 56.04664 * 15 14 12 47 47 H 1.09000 * 109.46741 * 60.00112 * 16 15 14 48 48 H 1.09002 * 109.46898 * 300.00102 * 16 15 14 49 49 H 0.97005 * 120.00189 * 0.02562 * 19 17 16 50 50 H 0.97000 * 119.99308 * 179.97438 * 23 22 20 51 51 H 1.09008 * 110.38489 * 100.78864 * 28 7 5 52 52 H 1.08995 * 110.51022 * 338.30683 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 6 4.1483 2.5615 -0.0013 6 8 3.4354 3.5427 -0.0008 7 7 5.4886 2.7025 -0.0014 8 6 6.5148 1.6340 -0.0015 9 6 7.6151 2.1505 -0.9534 10 1 8.6006 1.8731 -0.5793 11 6 7.4062 1.5938 -2.3631 12 6 7.4537 3.6849 -0.9533 13 6 7.1336 4.1861 -2.3630 14 6 8.7259 4.3534 -0.4282 15 7 8.5388 5.8103 -0.4031 16 6 9.7427 6.4871 0.0974 17 6 9.5134 7.9765 0.1093 18 8 8.4514 8.4296 -0.2621 19 7 10.4881 8.8049 0.5336 20 6 10.2796 10.1600 0.5440 21 1 9.3343 10.5634 0.2125 22 6 11.2825 11.0138 0.9868 23 7 12.4308 10.5225 1.3952 24 14 10.9982 12.8600 1.0016 25 1 10.4217 13.2615 2.3098 26 1 12.2906 13.5615 0.7940 27 1 10.0565 13.2246 -0.0872 28 6 6.2694 3.9635 -0.0025 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3632 -1.0277 0.0005 32 1 1.6885 1.8464 0.8899 33 1 1.6886 1.8464 -0.8900 34 1 3.8567 0.6441 -0.8908 35 1 3.8574 0.6438 0.8891 36 1 6.0932 0.7021 -0.3781 37 1 6.9161 1.4924 1.0021 38 1 8.1430 2.0288 -3.0384 39 1 7.5232 0.5102 -2.3469 40 1 6.4035 1.8458 -2.7083 41 1 7.9566 3.9371 -3.0328 42 1 6.2192 3.7112 -2.7186 43 1 6.9968 5.2673 -2.3418 44 1 9.5626 4.1058 -1.0813 45 1 8.9341 3.9964 0.5803 46 1 7.7292 6.0615 0.1443 47 1 10.5867 6.2542 -0.5518 48 1 9.9576 6.1448 1.1097 49 1 11.3373 8.4426 0.8310 50 1 13.1310 11.1186 1.7040 51 1 6.6319 4.1865 1.0011 52 1 5.6640 4.7872 -0.3806 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180333692.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:20:45 Heat of formation + Delta-G solvation = -143.681085 kcal Electronic energy + Delta-G solvation = -30112.426933 eV Core-core repulsion = 25917.808284 eV Total energy + Delta-G solvation = -4194.618649 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.56753 -40.19063 -39.69278 -38.64025 -36.65940 -35.83690 -34.32125 -33.26279 -32.87084 -31.84839 -29.01229 -28.49772 -27.43933 -26.73915 -26.51648 -25.18781 -24.10300 -22.42260 -21.15137 -20.34355 -19.96590 -19.52886 -18.46395 -17.90794 -17.45760 -17.14753 -16.97714 -16.62291 -16.51852 -16.22001 -16.00502 -15.68121 -15.52086 -15.41192 -15.26148 -14.76969 -14.60139 -14.26652 -14.18909 -13.98251 -13.73162 -13.48722 -13.28133 -13.17825 -13.05377 -12.88673 -12.83077 -12.49877 -12.43923 -12.42963 -12.37692 -12.30120 -12.15908 -12.13365 -11.51476 -11.50220 -11.43121 -11.31325 -10.99835 -10.71852 -10.33596 -10.01369 -9.77281 -9.26302 -8.47217 -5.95666 1.37019 1.40815 1.52336 1.53486 1.76781 2.06131 2.28745 2.81063 2.92185 3.20213 3.42339 3.51315 3.60506 3.73168 3.85701 3.98205 4.07439 4.20442 4.25158 4.27169 4.34355 4.42911 4.49004 4.49359 4.50211 4.56123 4.57846 4.65912 4.70093 4.76112 4.76989 4.79353 4.80757 4.83760 4.90115 4.96873 5.00271 5.05228 5.11098 5.26904 5.38481 5.40539 5.49610 5.62863 5.90158 6.08988 6.12979 6.38896 6.51376 6.60594 7.04673 7.12850 7.56760 8.12874 8.70094 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.018628 B = 0.001872 C = 0.001754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.755187 B =14955.485083 C =15960.097757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.406 6.406 3 C 0.077 3.923 4 C -0.122 4.122 5 C 0.530 3.470 6 O -0.594 6.594 7 N -0.618 5.618 8 C 0.099 3.901 9 C -0.091 4.091 10 H 0.112 0.888 11 C -0.142 4.142 12 C -0.058 4.058 13 C -0.122 4.122 14 C 0.076 3.924 15 N -0.683 5.683 16 C 0.067 3.933 17 C 0.436 3.564 18 O -0.626 6.626 19 N -0.573 5.573 20 C -0.336 4.336 21 H 0.076 0.924 22 C -0.011 4.011 23 N -0.918 5.918 24 Si 0.991 3.009 25 H -0.271 1.271 26 H -0.269 1.269 27 H -0.275 1.275 28 C 0.109 3.891 29 H 0.046 0.954 30 H 0.046 0.954 31 H 0.106 0.894 32 H 0.047 0.953 33 H 0.047 0.953 34 H 0.122 0.878 35 H 0.123 0.877 36 H 0.107 0.893 37 H 0.092 0.908 38 H 0.061 0.939 39 H 0.075 0.925 40 H 0.044 0.956 41 H 0.068 0.932 42 H 0.046 0.954 43 H 0.037 0.963 44 H 0.090 0.910 45 H 0.049 0.951 46 H 0.338 0.662 47 H 0.107 0.893 48 H 0.068 0.932 49 H 0.397 0.603 50 H 0.278 0.722 51 H 0.070 0.930 52 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.564 -28.804 -2.427 30.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.326 6.326 3 C 0.000 4.000 4 C -0.161 4.161 5 C 0.321 3.679 6 O -0.475 6.475 7 N -0.350 5.350 8 C -0.022 4.022 9 C -0.110 4.110 10 H 0.130 0.870 11 C -0.199 4.199 12 C -0.060 4.060 13 C -0.180 4.180 14 C -0.053 4.053 15 N -0.315 5.315 16 C -0.066 4.066 17 C 0.223 3.777 18 O -0.512 6.512 19 N -0.210 5.210 20 C -0.465 4.465 21 H 0.094 0.906 22 C -0.211 4.211 23 N -0.559 5.559 24 Si 0.815 3.185 25 H -0.197 1.197 26 H -0.193 1.193 27 H -0.200 1.200 28 C -0.014 4.014 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.124 0.876 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.140 0.860 35 H 0.141 0.859 36 H 0.126 0.874 37 H 0.110 0.890 38 H 0.080 0.920 39 H 0.094 0.906 40 H 0.063 0.937 41 H 0.087 0.913 42 H 0.065 0.935 43 H 0.056 0.944 44 H 0.108 0.892 45 H 0.067 0.933 46 H 0.157 0.843 47 H 0.125 0.875 48 H 0.085 0.915 49 H 0.231 0.769 50 H 0.087 0.913 51 H 0.088 0.912 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.292 -28.010 -3.260 30.376 hybrid contribution -0.021 1.527 1.146 1.910 sum -11.313 -26.482 -2.114 28.875 Atomic orbital electron populations 1.22951 0.79256 1.04156 1.00708 1.87758 1.21591 1.27607 1.95621 1.22088 0.92786 0.84268 1.00869 1.21383 0.94254 0.93005 1.07500 1.20620 0.80540 0.91748 0.75032 1.90730 1.61156 1.42908 1.52723 1.49041 1.04508 1.09607 1.71861 1.22850 0.87445 0.90915 1.00990 1.22185 1.00252 0.91635 0.96927 0.86970 1.21904 1.01522 1.01376 0.95098 1.21461 0.93123 0.96052 0.95339 1.21736 1.00855 1.00177 0.95198 1.22152 0.97352 0.85456 1.00357 1.60087 1.04332 1.07672 1.59434 1.21527 0.95142 0.89329 1.00565 1.20999 0.84537 0.90021 0.82124 1.90502 1.28172 1.78926 1.53612 1.41926 1.15359 1.06106 1.57659 1.19652 1.01331 0.82864 1.42673 0.90593 1.25999 0.94496 1.04634 0.95963 1.69665 1.05155 1.37742 1.43371 0.84954 0.77897 0.76963 0.78671 1.19685 1.19340 1.20033 1.22441 0.92224 0.87312 0.99413 0.93539 0.93534 0.87606 0.93451 0.93498 0.85953 0.85913 0.87436 0.88962 0.92029 0.90622 0.93674 0.91289 0.93469 0.94378 0.89181 0.93275 0.84324 0.87468 0.91463 0.76894 0.91284 0.91153 0.92899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 113.37 1.25 1.54 16 2 O -0.41 -6.88 10.70 -148.98 -1.59 -8.47 16 3 C 0.08 1.39 5.23 71.98 0.38 1.76 16 4 C -0.12 -1.77 5.05 29.85 0.15 -1.62 16 5 C 0.53 11.95 7.91 87.66 0.69 12.65 16 6 O -0.59 -19.54 16.25 -3.03 -0.05 -19.59 16 7 N -0.62 -11.61 3.32 -807.50 -2.68 -14.29 16 8 C 0.10 0.97 6.47 86.53 0.56 1.53 16 9 C -0.09 -0.96 3.30 -9.89 -0.03 -1.00 16 10 H 0.11 0.78 7.71 -2.39 -0.02 0.76 16 11 C -0.14 -1.42 7.93 71.98 0.57 -0.85 16 12 C -0.06 -1.07 0.82 -51.27 -0.04 -1.11 16 13 C -0.12 -2.74 7.10 71.98 0.51 -2.22 16 14 C 0.08 1.50 4.35 86.30 0.38 1.87 16 15 N -0.68 -20.73 5.38 -517.95 -2.79 -23.52 16 16 C 0.07 2.21 6.17 85.56 0.53 2.74 16 17 C 0.44 20.89 7.82 87.66 0.69 21.57 16 18 O -0.63 -35.53 15.78 -3.05 -0.05 -35.58 16 19 N -0.57 -29.61 5.29 -306.99 -1.62 -31.23 16 20 C -0.34 -19.36 9.68 84.04 0.81 -18.55 16 21 H 0.08 4.71 7.16 -2.92 -0.02 4.69 16 22 C -0.01 -0.60 5.50 84.93 0.47 -0.13 16 23 N -0.92 -49.61 13.05 21.66 0.28 -49.33 16 24 Si 0.99 43.53 29.55 68.60 2.03 45.56 16 25 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 26 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 27 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 28 C 0.11 2.49 5.17 86.51 0.45 2.94 16 29 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.05 0.94 8.10 -2.39 -0.02 0.92 16 33 H 0.05 0.94 8.10 -2.38 -0.02 0.92 16 34 H 0.12 1.27 7.95 -2.39 -0.02 1.25 16 35 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.11 0.56 7.03 -2.39 -0.02 0.54 16 37 H 0.09 0.66 8.14 -2.38 -0.02 0.64 16 38 H 0.06 0.68 6.84 -2.39 -0.02 0.66 16 39 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 40 H 0.04 0.59 6.76 -2.39 -0.02 0.57 16 41 H 0.07 1.36 6.89 -2.39 -0.02 1.34 16 42 H 0.05 1.05 6.71 -2.39 -0.02 1.03 16 43 H 0.04 1.12 7.62 -2.39 -0.02 1.10 16 44 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 45 H 0.05 0.82 8.12 -2.39 -0.02 0.80 16 46 H 0.34 11.42 7.44 -89.69 -0.67 10.75 16 47 H 0.11 3.14 8.14 -2.39 -0.02 3.12 16 48 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 49 H 0.40 19.28 7.90 -92.70 -0.73 18.55 16 50 H 0.28 14.02 8.31 -92.71 -0.77 13.25 16 51 H 0.07 1.57 7.80 -2.38 -0.02 1.55 16 52 H 0.05 1.61 7.60 -2.39 -0.02 1.59 16 Total: -1.00 -77.56 415.47 0.40 -77.16 By element: Atomic # 1 Polarization: 38.62 SS G_CDS: -0.48 Total: 38.15 kcal Atomic # 6 Polarization: 13.79 SS G_CDS: 7.35 Total: 21.14 kcal Atomic # 7 Polarization: -111.56 SS G_CDS: -6.81 Total: -118.37 kcal Atomic # 8 Polarization: -61.95 SS G_CDS: -1.69 Total: -63.64 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Total: -77.56 0.40 -77.16 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180333692.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.521 kcal (2) G-P(sol) polarization free energy of solvation -77.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds