Wall clock time and date at job start Wed Apr 1 2020 01:20:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42896 * 113.99861 * 2 1 4 4 H 1.09004 * 109.46993 * 329.99282 * 3 2 1 5 5 C 1.52994 * 109.47291 * 89.99727 * 3 2 1 6 6 C 1.50701 * 109.46772 * 209.99927 * 3 2 1 7 7 O 1.21277 * 120.00249 * 359.97438 * 6 3 2 8 8 N 1.34779 * 119.99912 * 179.97438 * 6 3 2 9 9 C 1.48154 * 127.83620 * 359.97400 * 8 6 3 10 10 C 1.54389 * 104.61546 * 219.60517 * 9 8 6 11 11 H 1.09004 * 110.34207 * 95.00433 * 10 9 8 12 12 C 1.53002 * 110.34408 * 217.26466 * 10 9 8 13 13 C 1.54291 * 104.96120 * 336.13487 * 10 9 8 14 14 C 1.53001 * 110.43033 * 241.08275 * 13 10 9 15 15 C 1.53000 * 110.34093 * 118.87189 * 13 10 9 16 16 N 1.46901 * 109.46855 * 183.00592 * 15 13 10 17 17 C 1.46898 * 111.00189 * 179.97438 * 16 15 13 18 18 C 1.50696 * 109.47176 * 180.02562 * 17 16 15 19 19 O 1.21288 * 120.00279 * 0.02562 * 18 17 16 20 20 N 1.34777 * 119.99735 * 179.97438 * 18 17 16 21 21 C 1.37105 * 119.99904 * 179.97438 * 20 18 17 22 22 H 1.07991 * 119.99780 * 0.02562 * 21 20 18 23 23 C 1.38954 * 119.99815 * 179.72596 * 21 20 18 24 24 N 1.31412 * 119.99962 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99686 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.46850 * 90.00463 * 25 23 21 27 27 H 1.48504 * 109.47159 * 210.00116 * 25 23 21 28 28 H 1.48497 * 109.47216 * 330.00562 * 25 23 21 29 29 C 1.48145 * 127.83812 * 179.97438 * 8 6 3 30 30 H 1.09000 * 109.46990 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47426 * 300.00389 * 1 2 3 32 32 H 1.09000 * 109.46989 * 60.00392 * 1 2 3 33 33 H 1.08997 * 109.47113 * 59.99765 * 5 3 2 34 34 H 1.09007 * 109.47088 * 180.02562 * 5 3 2 35 35 H 1.08999 * 109.47282 * 299.99475 * 5 3 2 36 36 H 1.08996 * 110.40460 * 338.38973 * 9 8 6 37 37 H 1.08999 * 110.40377 * 100.70516 * 9 8 6 38 38 H 1.08995 * 109.47391 * 175.53881 * 12 10 9 39 39 H 1.09005 * 109.46417 * 295.53695 * 12 10 9 40 40 H 1.08996 * 109.47011 * 55.53382 * 12 10 9 41 41 H 1.09002 * 109.47445 * 298.46556 * 14 13 10 42 42 H 1.09002 * 109.47163 * 58.46564 * 14 13 10 43 43 H 1.09001 * 109.47205 * 178.46473 * 14 13 10 44 44 H 1.08998 * 109.47488 * 63.00794 * 15 13 10 45 45 H 1.08993 * 109.47041 * 303.00422 * 15 13 10 46 46 H 1.00907 * 110.99760 * 56.04664 * 16 15 13 47 47 H 1.09000 * 109.46741 * 60.00112 * 17 16 15 48 48 H 1.09002 * 109.46898 * 300.00102 * 17 16 15 49 49 H 0.97005 * 120.00189 * 0.02562 * 20 18 17 50 50 H 0.97000 * 119.99308 * 179.97438 * 24 23 21 51 51 H 1.08993 * 110.41008 * 21.61383 * 29 8 6 52 52 H 1.08998 * 110.40671 * 259.17732 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3449 1.9993 -0.5140 5 6 2.2176 1.7714 1.4424 6 6 3.3386 1.2638 -0.7104 7 8 3.7476 0.2190 -1.1709 8 7 4.0722 2.3877 -0.8340 9 6 3.7433 3.7462 -0.3429 10 6 4.2138 4.6920 -1.4689 11 1 3.3844 4.9303 -2.1348 12 6 4.8059 5.9720 -0.8756 13 6 5.2996 3.8999 -2.2267 14 6 6.6409 4.6327 -2.1582 15 6 4.8839 3.6884 -3.6839 16 7 5.8957 2.8721 -4.3680 17 6 5.5289 2.6474 -5.7726 18 6 6.5875 1.8077 -6.4400 19 8 7.5523 1.4330 -5.8077 20 7 6.4616 1.4724 -7.7393 21 6 7.4250 0.7089 -8.3467 22 1 8.2844 0.3760 -7.7839 23 6 7.2923 0.3584 -9.6847 24 7 6.2438 0.7591 -10.3681 25 14 8.6045 -0.6823 -10.5120 26 1 8.2654 -2.1199 -10.3589 27 1 8.6703 -0.3403 -11.9557 28 1 9.9209 -0.4142 -9.8792 29 6 5.3903 2.5448 -1.4918 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 2.8828 1.0775 1.9563 34 1 2.6605 2.7674 1.4424 35 1 1.2567 1.8016 1.9562 36 1 2.6689 3.8445 -0.1880 37 1 4.2807 3.9564 0.5818 38 1 5.2047 6.5934 -1.6774 39 1 4.0276 6.5198 -0.3442 40 1 5.6068 5.7146 -0.1827 41 1 6.5470 5.6080 -2.6358 42 1 6.9298 4.7651 -1.1155 43 1 7.4017 4.0471 -2.6744 44 1 4.7994 4.6545 -4.1815 45 1 3.9218 3.1773 -3.7167 46 1 6.0391 1.9965 -3.8875 47 1 5.4486 3.6061 -6.2850 48 1 4.5713 2.1288 -5.8196 49 1 5.6898 1.7718 -8.2450 50 1 6.1515 0.5147 -11.3023 51 1 5.5585 1.7369 -2.2038 52 1 6.1861 2.5685 -0.7474 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180764635.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:20:52 Heat of formation + Delta-G solvation = -106.889178 kcal Electronic energy + Delta-G solvation = -30980.597244 eV Core-core repulsion = 26787.574011 eV Total energy + Delta-G solvation = -4193.023232 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.85176 -39.19519 -38.14658 -37.50422 -35.41245 -33.97408 -33.56633 -31.98200 -31.23523 -30.85326 -27.71917 -27.21404 -27.03844 -26.09012 -25.33432 -24.03730 -23.48947 -21.55349 -19.85974 -19.27673 -18.71851 -17.90551 -17.65401 -16.83374 -16.39545 -16.17531 -15.84211 -15.52636 -15.25142 -14.99402 -14.64308 -14.49671 -14.35177 -14.05442 -13.87818 -13.65794 -13.41209 -13.29742 -13.13801 -12.88829 -12.71016 -12.37214 -12.33135 -12.18051 -12.09669 -12.02162 -11.63312 -11.59754 -11.49008 -11.47790 -11.39554 -11.00488 -10.81473 -10.61825 -10.52433 -10.35314 -10.31854 -10.16792 -9.70267 -9.45927 -8.94845 -8.40286 -8.00430 -7.90592 -6.36985 -3.77441 2.39078 2.45798 3.21888 3.29949 3.36268 3.53731 3.96363 4.01045 4.11729 4.21228 4.29585 4.42005 4.50452 4.57594 4.64026 4.84548 4.90091 5.00121 5.00743 5.03099 5.08887 5.10252 5.16519 5.22139 5.24837 5.30728 5.33941 5.39706 5.50274 5.54655 5.64711 5.67192 5.68535 5.73780 5.76794 5.86164 5.86588 5.97782 6.02814 6.12110 6.14954 6.31680 6.48813 6.68248 7.24435 7.30711 7.60059 7.68496 7.99028 8.11524 8.66578 9.22945 9.59635 10.11304 10.80974 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.012211 B = 0.002471 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2292.528788 B =11328.519882 C =12875.600619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.359 6.359 3 C 0.075 3.925 4 H 0.085 0.915 5 C -0.175 4.175 6 C 0.532 3.468 7 O -0.512 6.512 8 N -0.623 5.623 9 C 0.102 3.898 10 C -0.099 4.099 11 H 0.082 0.918 12 C -0.143 4.143 13 C -0.065 4.065 14 C -0.131 4.131 15 C 0.073 3.927 16 N -0.666 5.666 17 C 0.051 3.949 18 C 0.442 3.558 19 O -0.582 6.582 20 N -0.565 5.565 21 C -0.297 4.297 22 H 0.103 0.897 23 C 0.021 3.979 24 N -0.903 5.903 25 Si 0.930 3.070 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.269 1.269 29 C 0.112 3.888 30 H 0.092 0.908 31 H 0.043 0.957 32 H 0.044 0.956 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.066 0.934 39 H 0.053 0.947 40 H 0.062 0.938 41 H 0.060 0.940 42 H 0.052 0.948 43 H 0.075 0.925 44 H 0.074 0.926 45 H 0.025 0.975 46 H 0.348 0.652 47 H 0.085 0.915 48 H 0.042 0.958 49 H 0.392 0.608 50 H 0.271 0.729 51 H 0.087 0.913 52 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.223 11.801 23.584 29.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.277 6.277 3 C 0.013 3.987 4 H 0.103 0.897 5 C -0.233 4.233 6 C 0.319 3.681 7 O -0.385 6.385 8 N -0.359 5.359 9 C -0.021 4.021 10 C -0.119 4.119 11 H 0.101 0.899 12 C -0.200 4.200 13 C -0.067 4.067 14 C -0.189 4.189 15 C -0.056 4.056 16 N -0.300 5.300 17 C -0.082 4.082 18 C 0.228 3.772 19 O -0.466 6.466 20 N -0.202 5.202 21 C -0.427 4.427 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.545 5.545 25 Si 0.757 3.243 26 H -0.204 1.204 27 H -0.209 1.209 28 H -0.194 1.194 29 C -0.010 4.010 30 H 0.110 0.890 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.090 0.910 34 H 0.095 0.905 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.085 0.915 39 H 0.072 0.928 40 H 0.081 0.919 41 H 0.079 0.921 42 H 0.071 0.929 43 H 0.094 0.906 44 H 0.093 0.907 45 H 0.043 0.957 46 H 0.169 0.831 47 H 0.104 0.896 48 H 0.060 0.940 49 H 0.225 0.775 50 H 0.081 0.919 51 H 0.105 0.895 52 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -11.950 11.147 23.419 28.557 hybrid contribution -1.013 -0.690 -0.794 1.460 sum -12.963 10.457 22.625 28.095 Atomic orbital electron populations 1.22893 0.80474 1.03424 0.99973 1.88064 1.19768 1.24968 1.94895 1.21832 0.93305 0.86911 0.96623 0.89697 1.22349 1.03463 1.02414 0.95036 1.20000 0.85525 0.82484 0.80078 1.90784 1.71061 1.29322 1.47380 1.48888 1.21323 1.08056 1.57675 1.22637 1.00815 0.81368 0.97320 1.22187 0.98279 0.95002 0.96457 0.89919 1.21899 1.00745 0.96147 1.01217 1.21534 0.96387 0.94345 0.94401 1.21830 0.95601 1.00366 1.01070 1.21977 0.92682 0.98440 0.92544 1.60179 1.44646 1.23502 1.01630 1.21658 0.96485 1.00128 0.89929 1.19796 0.88682 0.85509 0.83235 1.90520 1.33393 1.58424 1.64253 1.41861 1.22966 1.46736 1.08595 1.19708 1.02622 1.26842 0.93533 0.87929 1.25259 0.97843 0.98376 0.96536 1.69617 1.28483 1.46262 1.10113 0.85857 0.80739 0.79659 0.78040 1.20433 1.20950 1.19396 1.22546 0.83983 0.97804 0.96647 0.88989 0.93860 0.93760 0.91012 0.90537 0.91230 0.90423 0.90533 0.91520 0.92815 0.91904 0.92125 0.92908 0.90565 0.90740 0.95719 0.83060 0.89633 0.94048 0.77500 0.91933 0.89498 0.90553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.82 101.05 1.09 1.31 16 2 O -0.36 -4.30 9.88 -55.14 -0.54 -4.84 16 3 C 0.07 0.73 2.47 -27.89 -0.07 0.66 16 4 H 0.09 0.63 7.59 -51.93 -0.39 0.23 16 5 C -0.18 -1.18 9.28 37.15 0.34 -0.83 16 6 C 0.53 7.11 7.34 -10.98 -0.08 7.02 16 7 O -0.51 -9.59 16.77 -14.35 -0.24 -9.83 16 8 N -0.62 -6.65 3.31 -169.29 -0.56 -7.21 16 9 C 0.10 0.67 4.80 -2.40 -0.01 0.66 16 10 C -0.10 -0.69 3.31 -89.21 -0.30 -0.99 16 11 H 0.08 0.57 7.71 -51.93 -0.40 0.17 16 12 C -0.14 -0.77 7.95 37.16 0.30 -0.47 16 13 C -0.07 -0.65 0.82 -153.09 -0.13 -0.77 16 14 C -0.13 -1.28 7.12 37.16 0.26 -1.01 16 15 C 0.07 0.91 4.48 -3.82 -0.02 0.89 16 16 N -0.67 -11.04 5.44 -115.06 -0.63 -11.67 16 17 C 0.05 0.94 6.17 -4.98 -0.03 0.91 16 18 C 0.44 10.87 7.82 -10.99 -0.09 10.78 16 19 O -0.58 -16.33 15.78 5.55 0.09 -16.24 16 20 N -0.56 -14.84 5.29 -10.96 -0.06 -14.90 16 21 C -0.30 -8.56 9.68 -14.93 -0.14 -8.70 16 22 H 0.10 3.09 7.16 -52.49 -0.38 2.72 16 23 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -25.21 13.05 55.50 0.72 -24.49 16 25 Si 0.93 21.65 29.55 -169.99 -5.02 16.63 16 26 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 27 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 28 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 29 C 0.11 1.31 6.01 -2.39 -0.01 1.30 16 30 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.04 0.23 7.87 -51.93 -0.41 -0.18 16 32 H 0.04 0.29 8.08 -51.93 -0.42 -0.13 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.08 0.38 5.35 -51.92 -0.28 0.10 16 35 H 0.07 0.35 7.87 -51.93 -0.41 -0.06 16 36 H 0.08 0.37 6.57 -51.93 -0.34 0.03 16 37 H 0.08 0.41 7.70 -51.93 -0.40 0.01 16 38 H 0.07 0.39 6.85 -51.93 -0.36 0.03 16 39 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 40 H 0.06 0.33 6.72 -51.93 -0.35 -0.02 16 41 H 0.06 0.55 6.90 -51.93 -0.36 0.20 16 42 H 0.05 0.42 6.70 -51.93 -0.35 0.07 16 43 H 0.08 0.96 7.66 -51.93 -0.40 0.56 16 44 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 46 H 0.35 6.32 6.36 -39.29 -0.25 6.07 16 47 H 0.09 1.44 8.14 -51.93 -0.42 1.01 16 48 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 49 H 0.39 9.84 7.90 -40.82 -0.32 9.52 16 50 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 51 H 0.09 1.30 5.75 -51.93 -0.30 1.00 16 52 H 0.08 0.82 7.85 -51.93 -0.41 0.41 16 LS Contribution 407.84 15.07 6.15 6.15 Total: -1.00 -36.05 407.84 -7.68 -43.73 By element: Atomic # 1 Polarization: 20.04 SS G_CDS: -8.61 Total: 11.43 kcal Atomic # 6 Polarization: 10.21 SS G_CDS: 1.03 Total: 11.24 kcal Atomic # 7 Polarization: -57.74 SS G_CDS: -0.52 Total: -58.26 kcal Atomic # 8 Polarization: -30.22 SS G_CDS: -0.70 Total: -30.91 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -36.05 -7.68 -43.73 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180764635.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.159 kcal (2) G-P(sol) polarization free energy of solvation -36.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds