Wall clock time and date at job start Wed Apr 1 2020 01:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42896 * 113.99861 * 2 1 4 4 H 1.09004 * 109.46993 * 329.99282 * 3 2 1 5 5 C 1.52994 * 109.47291 * 89.99727 * 3 2 1 6 6 C 1.50701 * 109.46772 * 209.99927 * 3 2 1 7 7 O 1.21277 * 120.00249 * 359.97438 * 6 3 2 8 8 N 1.34779 * 119.99912 * 179.97438 * 6 3 2 9 9 C 1.48154 * 127.83620 * 359.97400 * 8 6 3 10 10 C 1.54389 * 104.61546 * 219.60517 * 9 8 6 11 11 H 1.09004 * 110.34207 * 95.00433 * 10 9 8 12 12 C 1.53002 * 110.34408 * 217.26466 * 10 9 8 13 13 C 1.54291 * 104.96120 * 336.13487 * 10 9 8 14 14 C 1.53001 * 110.43033 * 241.08275 * 13 10 9 15 15 C 1.53000 * 110.34093 * 118.87189 * 13 10 9 16 16 N 1.46901 * 109.46855 * 183.00592 * 15 13 10 17 17 C 1.46898 * 111.00189 * 179.97438 * 16 15 13 18 18 C 1.50696 * 109.47176 * 180.02562 * 17 16 15 19 19 O 1.21288 * 120.00279 * 0.02562 * 18 17 16 20 20 N 1.34777 * 119.99735 * 179.97438 * 18 17 16 21 21 C 1.37105 * 119.99904 * 179.97438 * 20 18 17 22 22 H 1.07991 * 119.99780 * 0.02562 * 21 20 18 23 23 C 1.38954 * 119.99815 * 179.72596 * 21 20 18 24 24 N 1.31412 * 119.99962 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99686 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.46850 * 90.00463 * 25 23 21 27 27 H 1.48504 * 109.47159 * 210.00116 * 25 23 21 28 28 H 1.48497 * 109.47216 * 330.00562 * 25 23 21 29 29 C 1.48145 * 127.83812 * 179.97438 * 8 6 3 30 30 H 1.09000 * 109.46990 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47426 * 300.00389 * 1 2 3 32 32 H 1.09000 * 109.46989 * 60.00392 * 1 2 3 33 33 H 1.08997 * 109.47113 * 59.99765 * 5 3 2 34 34 H 1.09007 * 109.47088 * 180.02562 * 5 3 2 35 35 H 1.08999 * 109.47282 * 299.99475 * 5 3 2 36 36 H 1.08996 * 110.40460 * 338.38973 * 9 8 6 37 37 H 1.08999 * 110.40377 * 100.70516 * 9 8 6 38 38 H 1.08995 * 109.47391 * 175.53881 * 12 10 9 39 39 H 1.09005 * 109.46417 * 295.53695 * 12 10 9 40 40 H 1.08996 * 109.47011 * 55.53382 * 12 10 9 41 41 H 1.09002 * 109.47445 * 298.46556 * 14 13 10 42 42 H 1.09002 * 109.47163 * 58.46564 * 14 13 10 43 43 H 1.09001 * 109.47205 * 178.46473 * 14 13 10 44 44 H 1.08998 * 109.47488 * 63.00794 * 15 13 10 45 45 H 1.08993 * 109.47041 * 303.00422 * 15 13 10 46 46 H 1.00907 * 110.99760 * 56.04664 * 16 15 13 47 47 H 1.09000 * 109.46741 * 60.00112 * 17 16 15 48 48 H 1.09002 * 109.46898 * 300.00102 * 17 16 15 49 49 H 0.97005 * 120.00189 * 0.02562 * 20 18 17 50 50 H 0.97000 * 119.99308 * 179.97438 * 24 23 21 51 51 H 1.08993 * 110.41008 * 21.61383 * 29 8 6 52 52 H 1.08998 * 110.40671 * 259.17732 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3449 1.9993 -0.5140 5 6 2.2176 1.7714 1.4424 6 6 3.3386 1.2638 -0.7104 7 8 3.7476 0.2190 -1.1709 8 7 4.0722 2.3877 -0.8340 9 6 3.7433 3.7462 -0.3429 10 6 4.2138 4.6920 -1.4689 11 1 3.3844 4.9303 -2.1348 12 6 4.8059 5.9720 -0.8756 13 6 5.2996 3.8999 -2.2267 14 6 6.6409 4.6327 -2.1582 15 6 4.8839 3.6884 -3.6839 16 7 5.8957 2.8721 -4.3680 17 6 5.5289 2.6474 -5.7726 18 6 6.5875 1.8077 -6.4400 19 8 7.5523 1.4330 -5.8077 20 7 6.4616 1.4724 -7.7393 21 6 7.4250 0.7089 -8.3467 22 1 8.2844 0.3760 -7.7839 23 6 7.2923 0.3584 -9.6847 24 7 6.2438 0.7591 -10.3681 25 14 8.6045 -0.6823 -10.5120 26 1 8.2654 -2.1199 -10.3589 27 1 8.6703 -0.3403 -11.9557 28 1 9.9209 -0.4142 -9.8792 29 6 5.3903 2.5448 -1.4918 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 2.8828 1.0775 1.9563 34 1 2.6605 2.7674 1.4424 35 1 1.2567 1.8016 1.9562 36 1 2.6689 3.8445 -0.1880 37 1 4.2807 3.9564 0.5818 38 1 5.2047 6.5934 -1.6774 39 1 4.0276 6.5198 -0.3442 40 1 5.6068 5.7146 -0.1827 41 1 6.5470 5.6080 -2.6358 42 1 6.9298 4.7651 -1.1155 43 1 7.4017 4.0471 -2.6744 44 1 4.7994 4.6545 -4.1815 45 1 3.9218 3.1773 -3.7167 46 1 6.0391 1.9965 -3.8875 47 1 5.4486 3.6061 -6.2850 48 1 4.5713 2.1288 -5.8196 49 1 5.6898 1.7718 -8.2450 50 1 6.1515 0.5147 -11.3023 51 1 5.5585 1.7369 -2.2038 52 1 6.1861 2.5685 -0.7474 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180764635.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:20:51 Heat of formation + Delta-G solvation = -134.414523 kcal Electronic energy + Delta-G solvation = -30981.790832 eV Core-core repulsion = 26787.574011 eV Total energy + Delta-G solvation = -4194.216821 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.70136 -40.28827 -39.85199 -38.40679 -36.70528 -35.88414 -34.64912 -33.30723 -32.64029 -31.76157 -28.94771 -28.06032 -27.72305 -26.99261 -26.61835 -25.38319 -24.44172 -22.35839 -21.23545 -20.60948 -19.98436 -19.53494 -18.57756 -17.89614 -17.55529 -17.23105 -17.03187 -16.55726 -16.54104 -16.10360 -16.00951 -15.73983 -15.38996 -15.29329 -15.18894 -14.75775 -14.48779 -14.33871 -14.12927 -13.71075 -13.58872 -13.48625 -13.36777 -13.26799 -13.07010 -12.98544 -12.88535 -12.75903 -12.55791 -12.46078 -12.43886 -12.23007 -12.14062 -12.12563 -11.57300 -11.53989 -11.37346 -11.24412 -11.08894 -10.57772 -10.38606 -10.05367 -9.83919 -9.37361 -8.49895 -5.98953 1.35462 1.38860 1.46040 1.52290 1.63151 2.00714 2.26681 2.86001 2.89102 3.16698 3.33464 3.43201 3.56166 3.68257 3.78475 3.84371 3.98145 4.14959 4.25243 4.27981 4.31414 4.40646 4.41750 4.45596 4.50804 4.52316 4.61551 4.65330 4.67067 4.72316 4.78167 4.81958 4.82213 4.85291 4.89911 4.98546 5.11052 5.15776 5.22310 5.30858 5.37556 5.43469 5.50852 5.71660 5.84035 6.04894 6.05701 6.26810 6.47147 6.56284 7.04625 7.08817 7.51523 8.07137 8.67767 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.012211 B = 0.002471 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2292.528788 B =11328.519882 C =12875.600619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.402 6.402 3 C 0.077 3.923 4 H 0.114 0.886 5 C -0.167 4.167 6 C 0.519 3.481 7 O -0.586 6.586 8 N -0.618 5.618 9 C 0.097 3.903 10 C -0.090 4.090 11 H 0.090 0.910 12 C -0.139 4.139 13 C -0.059 4.059 14 C -0.125 4.125 15 C 0.074 3.926 16 N -0.675 5.675 17 C 0.065 3.935 18 C 0.437 3.563 19 O -0.623 6.623 20 N -0.573 5.573 21 C -0.335 4.335 22 H 0.077 0.923 23 C -0.013 4.013 24 N -0.920 5.920 25 Si 0.994 3.006 26 H -0.272 1.272 27 H -0.267 1.267 28 H -0.272 1.272 29 C 0.107 3.893 30 H 0.092 0.908 31 H 0.070 0.930 32 H 0.051 0.949 33 H 0.051 0.949 34 H 0.099 0.901 35 H 0.093 0.907 36 H 0.108 0.892 37 H 0.099 0.901 38 H 0.063 0.937 39 H 0.074 0.926 40 H 0.065 0.935 41 H 0.071 0.929 42 H 0.074 0.926 43 H 0.039 0.961 44 H 0.091 0.909 45 H 0.020 0.980 46 H 0.335 0.665 47 H 0.111 0.889 48 H 0.054 0.946 49 H 0.396 0.604 50 H 0.278 0.722 51 H 0.044 0.956 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.056 14.541 24.935 32.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.321 6.321 3 C 0.016 3.984 4 H 0.132 0.868 5 C -0.224 4.224 6 C 0.309 3.691 7 O -0.465 6.465 8 N -0.352 5.352 9 C -0.024 4.024 10 C -0.110 4.110 11 H 0.108 0.892 12 C -0.197 4.197 13 C -0.060 4.060 14 C -0.183 4.183 15 C -0.054 4.054 16 N -0.307 5.307 17 C -0.068 4.068 18 C 0.224 3.776 19 O -0.509 6.509 20 N -0.210 5.210 21 C -0.465 4.465 22 H 0.095 0.905 23 C -0.213 4.213 24 N -0.561 5.561 25 Si 0.818 3.182 26 H -0.198 1.198 27 H -0.191 1.191 28 H -0.197 1.197 29 C -0.016 4.016 30 H 0.111 0.889 31 H 0.088 0.912 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.118 0.882 35 H 0.112 0.888 36 H 0.126 0.874 37 H 0.117 0.883 38 H 0.082 0.918 39 H 0.093 0.907 40 H 0.084 0.916 41 H 0.090 0.910 42 H 0.092 0.908 43 H 0.059 0.941 44 H 0.109 0.891 45 H 0.038 0.962 46 H 0.155 0.845 47 H 0.129 0.871 48 H 0.072 0.928 49 H 0.230 0.770 50 H 0.088 0.912 51 H 0.062 0.938 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -13.827 13.971 24.783 31.632 hybrid contribution -0.452 -1.512 -1.192 1.978 sum -14.279 12.458 23.591 30.259 Atomic orbital electron populations 1.23092 0.78451 1.04156 1.01583 1.88016 1.22144 1.26703 1.95203 1.22008 0.91342 0.86827 0.98230 0.86832 1.22340 1.04555 1.02841 0.92680 1.20924 0.86823 0.81996 0.79383 1.90740 1.72985 1.32105 1.50650 1.48979 1.20422 1.09237 1.56553 1.23014 1.03182 0.78404 0.97836 1.22176 0.97188 0.95358 0.96254 0.89158 1.21883 1.01462 0.95038 1.01272 1.21491 0.97852 0.93806 0.92836 1.21783 0.94357 1.00028 1.02106 1.22121 0.91290 0.98003 0.94015 1.60237 1.46545 1.23161 1.00787 1.21532 0.94377 1.00011 0.90857 1.20859 0.89237 0.84886 0.82604 1.90486 1.35520 1.59896 1.65022 1.41928 1.22791 1.46923 1.09343 1.19672 1.03201 1.29108 0.94510 0.90451 1.26073 0.99902 0.98915 0.96406 1.69675 1.29419 1.46385 1.10641 0.84915 0.77768 0.78053 0.77514 1.19759 1.19139 1.19717 1.22520 0.85174 0.97540 0.96342 0.88925 0.91166 0.93068 0.93023 0.88205 0.88829 0.87421 0.88251 0.91810 0.90662 0.91567 0.91015 0.90766 0.94134 0.89091 0.96206 0.84533 0.87148 0.92842 0.76986 0.91208 0.93756 0.89879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 10.82 113.37 1.23 1.54 16 2 O -0.40 -9.56 9.88 -129.94 -1.28 -10.84 16 3 C 0.08 1.38 2.47 29.85 0.07 1.45 16 4 H 0.11 1.32 7.59 -2.39 -0.02 1.30 16 5 C -0.17 -1.78 9.28 71.98 0.67 -1.11 16 6 C 0.52 14.13 7.34 87.66 0.64 14.77 16 7 O -0.59 -23.68 16.77 16.02 0.27 -23.41 16 8 N -0.62 -12.69 3.31 -807.89 -2.67 -15.36 16 9 C 0.10 0.92 4.80 86.53 0.42 1.33 16 10 C -0.09 -0.94 3.31 -9.88 -0.03 -0.97 16 11 H 0.09 0.87 7.71 -2.39 -0.02 0.86 16 12 C -0.14 -0.89 7.95 71.98 0.57 -0.31 16 13 C -0.06 -1.09 0.82 -51.26 -0.04 -1.13 16 14 C -0.13 -2.29 7.12 71.98 0.51 -1.78 16 15 C 0.07 1.79 4.48 86.30 0.39 2.18 16 16 N -0.67 -23.05 5.44 -517.95 -2.82 -25.87 16 17 C 0.06 2.43 6.17 85.56 0.53 2.95 16 18 C 0.44 22.29 7.82 87.66 0.69 22.98 16 19 O -0.62 -36.81 15.78 -3.05 -0.05 -36.86 16 20 N -0.57 -31.10 5.29 -306.99 -1.62 -32.73 16 21 C -0.34 -19.97 9.68 84.04 0.81 -19.16 16 22 H 0.08 4.91 7.16 -2.92 -0.02 4.89 16 23 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 24 N -0.92 -51.32 13.05 21.66 0.28 -51.04 16 25 Si 0.99 44.59 29.55 68.60 2.03 46.62 16 26 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 27 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 28 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 29 C 0.11 2.57 6.01 86.55 0.52 3.09 16 30 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.07 0.55 7.87 -2.39 -0.02 0.53 16 32 H 0.05 0.60 8.08 -2.39 -0.02 0.58 16 33 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.10 0.55 5.35 -2.38 -0.01 0.54 16 35 H 0.09 0.58 7.87 -2.39 -0.02 0.56 16 36 H 0.11 0.45 6.57 -2.39 -0.02 0.43 16 37 H 0.10 0.58 7.70 -2.39 -0.02 0.56 16 38 H 0.06 0.49 6.85 -2.39 -0.02 0.47 16 39 H 0.07 0.22 8.14 -2.38 -0.02 0.20 16 40 H 0.07 0.41 6.72 -2.39 -0.02 0.39 16 41 H 0.07 1.16 6.90 -2.39 -0.02 1.14 16 42 H 0.07 1.03 6.70 -2.39 -0.02 1.01 16 43 H 0.04 1.04 7.66 -2.39 -0.02 1.02 16 44 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 45 H 0.02 0.50 8.14 -2.39 -0.02 0.48 16 46 H 0.34 13.09 6.36 -89.69 -0.57 12.52 16 47 H 0.11 3.60 8.14 -2.39 -0.02 3.58 16 48 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 49 H 0.40 20.37 7.90 -92.70 -0.73 19.64 16 50 H 0.28 14.46 8.31 -92.71 -0.77 13.69 16 51 H 0.04 1.46 5.75 -2.39 -0.01 1.44 16 52 H 0.08 1.83 7.85 -2.39 -0.02 1.81 16 Total: -1.00 -85.06 407.84 1.21 -83.85 By element: Atomic # 1 Polarization: 40.45 SS G_CDS: -0.37 Total: 40.08 kcal Atomic # 6 Polarization: 18.12 SS G_CDS: 7.44 Total: 25.55 kcal Atomic # 7 Polarization: -118.16 SS G_CDS: -6.83 Total: -124.99 kcal Atomic # 8 Polarization: -70.05 SS G_CDS: -1.06 Total: -71.12 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -85.06 1.21 -83.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180764635.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.566 kcal (2) G-P(sol) polarization free energy of solvation -85.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds