Wall clock time and date at job start Wed Apr 1 2020 01:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42905 * 114.00094 * 2 1 4 4 C 1.50703 * 109.47190 * 180.02562 * 3 2 1 5 5 O 1.21287 * 119.99521 * 359.97438 * 4 3 2 6 6 N 1.34772 * 120.00186 * 179.97438 * 4 3 2 7 7 C 1.46494 * 120.00128 * 179.97438 * 6 4 3 8 8 H 1.08997 * 109.47421 * 35.00049 * 7 6 4 9 9 C 1.53000 * 109.47199 * 275.00058 * 7 6 4 10 10 C 1.50701 * 109.47367 * 155.00347 * 7 6 4 11 11 O 1.21282 * 119.99933 * 26.46548 * 10 7 6 12 12 N 1.34776 * 120.00228 * 206.46946 * 10 7 6 13 13 C 1.48143 * 127.83972 * 175.20005 * 12 10 7 14 14 C 1.54384 * 104.61831 * 219.60641 * 13 12 10 15 15 H 1.09004 * 110.34538 * 95.00364 * 14 13 12 16 16 C 1.53002 * 110.34354 * 217.26187 * 14 13 12 17 17 C 1.54286 * 104.96365 * 336.13291 * 14 13 12 18 18 C 1.52997 * 110.43235 * 241.08549 * 17 14 13 19 19 C 1.52995 * 110.34189 * 118.86972 * 17 14 13 20 20 N 1.46503 * 109.47026 * 183.01236 * 19 17 14 21 21 C 1.36937 * 120.00188 * 179.97438 * 20 19 17 22 22 H 1.08002 * 119.99852 * 359.72929 * 21 20 19 23 23 C 1.38810 * 119.99924 * 179.97438 * 21 20 19 24 24 N 1.31620 * 119.99578 * 180.02562 * 23 21 20 25 25 Si 1.86799 * 120.00311 * 0.02562 * 23 21 20 26 26 H 1.48498 * 109.47012 * 89.99824 * 25 23 21 27 27 H 1.48498 * 109.47086 * 209.99907 * 25 23 21 28 28 H 1.48502 * 109.47130 * 330.00052 * 25 23 21 29 29 C 1.48147 * 127.83447 * 355.22700 * 12 10 7 30 30 H 1.08997 * 109.47594 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47257 * 300.00636 * 1 2 3 32 32 H 1.09000 * 109.47247 * 59.99857 * 1 2 3 33 33 H 1.08990 * 109.47312 * 59.99684 * 3 2 1 34 34 H 1.09000 * 109.46683 * 299.99562 * 3 2 1 35 35 H 0.97002 * 119.99987 * 0.02562 * 6 4 3 36 36 H 1.09004 * 109.46984 * 64.04188 * 9 7 6 37 37 H 1.09002 * 109.46985 * 184.03677 * 9 7 6 38 38 H 1.09000 * 109.47343 * 304.03745 * 9 7 6 39 39 H 1.09008 * 110.40980 * 338.39186 * 13 12 10 40 40 H 1.09003 * 110.40826 * 100.70195 * 13 12 10 41 41 H 1.09005 * 109.47403 * 175.53606 * 16 14 13 42 42 H 1.09003 * 109.47292 * 295.53935 * 16 14 13 43 43 H 1.08998 * 109.47159 * 55.53770 * 16 14 13 44 44 H 1.08997 * 109.47425 * 298.46097 * 18 17 14 45 45 H 1.09003 * 109.47231 * 58.46508 * 18 17 14 46 46 H 1.09005 * 109.47126 * 178.46306 * 18 17 14 47 47 H 1.09001 * 109.47517 * 63.01314 * 19 17 14 48 48 H 1.09002 * 109.47190 * 303.00833 * 19 17 14 49 49 H 0.97003 * 119.99833 * 0.02562 * 20 19 17 50 50 H 0.97004 * 119.99690 * 180.02562 * 24 23 21 51 51 H 1.08997 * 110.40952 * 21.60996 * 29 12 10 52 52 H 1.09000 * 110.50582 * 259.22456 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 8 4.0340 0.0915 -0.0006 6 7 4.2765 2.2968 -0.0013 7 6 5.7369 2.1811 -0.0013 8 1 6.0326 1.3129 -0.5903 9 6 6.2355 2.0162 1.4357 10 6 6.3393 3.4248 -0.6024 11 8 5.7361 4.4758 -0.5527 12 7 7.5484 3.3692 -1.1953 13 6 8.2551 4.4499 -1.9214 14 6 8.9105 3.7445 -3.1282 15 1 8.2698 3.8226 -4.0066 16 6 10.2857 4.3504 -3.4159 17 6 9.0536 2.2697 -2.6981 18 6 10.5266 1.8563 -2.6897 19 6 8.2529 1.3626 -3.6345 20 7 8.3433 -0.0230 -3.1674 21 6 7.7010 -1.0198 -3.8522 22 1 7.1241 -0.7838 -4.7343 23 6 7.7871 -2.3327 -3.4099 24 7 7.1701 -3.2908 -4.0685 25 14 8.7786 -2.7397 -1.8800 26 1 7.9012 -2.6562 -0.6848 27 1 9.3266 -4.1149 -1.9967 28 1 9.8961 -1.7715 -1.7422 29 6 8.4720 2.2132 -1.2690 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3634 0.5139 -0.8900 33 1 1.6886 1.8464 0.8899 34 1 1.6886 1.8463 -0.8900 35 1 3.8594 3.1725 -0.0009 36 1 5.8573 1.0799 1.8463 37 1 7.3254 2.0021 1.4428 38 1 5.8790 2.8490 2.0419 39 1 7.5469 5.2056 -2.2615 40 1 9.0153 4.9020 -1.2842 41 1 10.7685 3.7915 -4.2176 42 1 10.1682 5.3911 -3.7181 43 1 10.9001 4.3003 -2.5170 44 1 10.9362 1.9502 -3.6954 45 1 11.0815 2.5027 -2.0096 46 1 10.6117 0.8215 -2.3579 47 1 8.6589 1.4330 -4.6436 48 1 7.2092 1.6768 -3.6400 49 1 8.8576 -0.2342 -2.3725 50 1 7.2300 -4.2082 -3.7592 51 1 7.9275 1.2813 -1.1169 52 1 9.2677 2.3124 -0.5307 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181563328.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:20:58 Heat of formation + Delta-G solvation = -90.670223 kcal Electronic energy + Delta-G solvation = -32041.922896 eV Core-core repulsion = 27849.602970 eV Total energy + Delta-G solvation = -4192.319926 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.73828 -39.74155 -38.52980 -37.44212 -34.99719 -34.80472 -33.51181 -31.77168 -31.19369 -30.00955 -28.62362 -27.31286 -26.15344 -25.97651 -25.88924 -23.96997 -22.89041 -21.04692 -20.52133 -19.57661 -18.70329 -17.99734 -17.59671 -16.92826 -16.50017 -16.37457 -15.96098 -15.65511 -15.11411 -14.98772 -14.72115 -14.51983 -14.31276 -14.09756 -13.89603 -13.73430 -13.33076 -13.18548 -12.92628 -12.71947 -12.67688 -12.44892 -12.28540 -12.19923 -12.00703 -11.73388 -11.70235 -11.59802 -11.53435 -11.44208 -11.28192 -10.86260 -10.63000 -10.38782 -10.23557 -10.01856 -9.94901 -9.90283 -9.76433 -9.51497 -9.18542 -8.86132 -8.78223 -7.19740 -5.71169 -3.07319 2.31106 2.61763 2.65298 3.04988 3.37938 3.44461 3.50733 3.95688 4.23314 4.50470 4.61353 4.64173 4.69886 4.76480 4.89393 4.97403 5.05234 5.09782 5.13406 5.15206 5.20924 5.23926 5.36466 5.43753 5.45140 5.51497 5.51828 5.59259 5.61199 5.64430 5.67174 5.75176 5.78423 5.81974 5.97331 6.01236 6.06740 6.11932 6.24105 6.30512 6.34627 6.49266 6.63508 6.70496 6.82546 7.42575 7.44987 7.97619 8.03146 8.23941 8.47170 9.25048 9.97166 10.15487 11.47408 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.007477 B = 0.004832 C = 0.003295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3743.875242 B = 5792.829889 C = 8494.952324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.363 6.363 3 C 0.047 3.953 4 C 0.511 3.489 5 O -0.500 6.500 6 N -0.716 5.716 7 C 0.128 3.872 8 H 0.119 0.881 9 C -0.156 4.156 10 C 0.540 3.460 11 O -0.547 6.547 12 N -0.612 5.612 13 C 0.112 3.888 14 C -0.097 4.097 15 H 0.085 0.915 16 C -0.141 4.141 17 C -0.080 4.080 18 C -0.136 4.136 19 C 0.172 3.828 20 N -0.752 5.752 21 C -0.246 4.246 22 H 0.088 0.912 23 C 0.009 3.991 24 N -0.931 5.931 25 Si 0.878 3.122 26 H -0.280 1.280 27 H -0.291 1.291 28 H -0.278 1.278 29 C 0.099 3.901 30 H 0.091 0.909 31 H 0.042 0.958 32 H 0.044 0.956 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.407 0.593 36 H 0.077 0.923 37 H 0.070 0.930 38 H 0.064 0.936 39 H 0.080 0.920 40 H 0.071 0.929 41 H 0.065 0.935 42 H 0.052 0.948 43 H 0.059 0.941 44 H 0.064 0.936 45 H 0.054 0.946 46 H 0.061 0.939 47 H 0.031 0.969 48 H 0.025 0.975 49 H 0.360 0.640 50 H 0.259 0.741 51 H 0.093 0.907 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.525 17.929 9.517 20.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.281 6.281 3 C -0.033 4.033 4 C 0.296 3.704 5 O -0.372 6.372 6 N -0.373 5.373 7 C 0.020 3.980 8 H 0.137 0.863 9 C -0.214 4.214 10 C 0.328 3.672 11 O -0.425 6.425 12 N -0.345 5.345 13 C -0.010 4.010 14 C -0.117 4.117 15 H 0.103 0.897 16 C -0.199 4.199 17 C -0.082 4.082 18 C -0.193 4.193 19 C 0.045 3.955 20 N -0.399 5.399 21 C -0.375 4.375 22 H 0.106 0.894 23 C -0.187 4.187 24 N -0.579 5.579 25 Si 0.708 3.292 26 H -0.206 1.206 27 H -0.217 1.217 28 H -0.204 1.204 29 C -0.023 4.023 30 H 0.110 0.890 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.097 0.903 34 H 0.099 0.901 35 H 0.243 0.757 36 H 0.096 0.904 37 H 0.089 0.911 38 H 0.083 0.917 39 H 0.099 0.901 40 H 0.089 0.911 41 H 0.084 0.916 42 H 0.071 0.929 43 H 0.078 0.922 44 H 0.083 0.917 45 H 0.073 0.927 46 H 0.080 0.920 47 H 0.049 0.951 48 H 0.043 0.957 49 H 0.193 0.807 50 H 0.069 0.931 51 H 0.112 0.888 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.621 17.363 9.420 19.927 hybrid contribution 0.245 0.164 0.970 1.013 sum -2.376 17.526 10.390 20.513 Atomic orbital electron populations 1.22838 0.80423 1.03406 0.99949 1.88066 1.19715 1.24928 1.95377 1.22165 0.91329 0.87167 1.02624 1.20271 0.88759 0.84455 0.76923 1.90843 1.74226 1.26098 1.46076 1.45585 1.05228 1.09554 1.76922 1.20751 0.81074 0.97504 0.98713 0.86296 1.22079 1.01769 1.03510 0.94078 1.20118 0.79649 0.89999 0.77384 1.90660 1.60910 1.31469 1.59466 1.48822 1.16963 1.14803 1.53890 1.22428 0.95612 0.90384 0.92614 1.22140 0.97551 0.94015 0.97950 0.89698 1.21889 0.95756 1.00117 1.02116 1.21775 0.96833 0.94825 0.94738 1.21900 0.93609 1.01579 1.02239 1.20643 0.96170 0.84032 0.94631 1.42726 1.62112 1.02720 1.32316 1.18983 1.24168 0.86210 1.08160 0.89377 1.24637 0.99975 0.95622 0.98428 1.69691 1.47197 1.00073 1.40944 0.86655 0.80241 0.77510 0.84806 1.20627 1.21716 1.20386 1.22789 0.92575 0.89867 0.97116 0.89007 0.93976 0.93756 0.90254 0.90073 0.75665 0.90449 0.91085 0.91715 0.90130 0.91050 0.91586 0.92877 0.92175 0.91657 0.92713 0.91966 0.95148 0.95697 0.80690 0.93063 0.88831 0.90737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 101.05 1.11 1.39 16 2 O -0.36 -5.21 10.24 -55.14 -0.56 -5.78 16 3 C 0.05 0.55 6.42 36.01 0.23 0.78 16 4 C 0.51 7.91 7.87 -10.99 -0.09 7.82 16 5 O -0.50 -10.51 16.16 -14.36 -0.23 -10.75 16 6 N -0.72 -9.61 5.05 -54.94 -0.28 -9.89 16 7 C 0.13 1.86 2.48 -69.09 -0.17 1.68 16 8 H 0.12 2.09 6.23 -51.93 -0.32 1.77 16 9 C -0.16 -1.92 9.47 37.16 0.35 -1.57 16 10 C 0.54 7.91 7.11 -10.99 -0.08 7.83 16 11 O -0.55 -8.81 16.33 5.56 0.09 -8.72 16 12 N -0.61 -8.23 3.32 -169.30 -0.56 -8.80 16 13 C 0.11 1.27 6.57 -2.41 -0.02 1.26 16 14 C -0.10 -1.09 3.31 -89.22 -0.30 -1.38 16 15 H 0.08 1.02 7.71 -51.93 -0.40 0.62 16 16 C -0.14 -1.25 7.95 37.16 0.30 -0.95 16 17 C -0.08 -1.11 0.73 -153.11 -0.11 -1.22 16 18 C -0.14 -1.72 7.10 37.16 0.26 -1.46 16 19 C 0.17 3.21 4.96 -4.04 -0.02 3.19 16 20 N -0.75 -17.32 4.56 -59.91 -0.27 -17.59 16 21 C -0.25 -7.00 10.47 -15.06 -0.16 -7.16 16 22 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 23 C 0.01 0.28 5.50 -17.43 -0.10 0.19 16 24 N -0.93 -29.98 13.97 55.49 0.78 -29.21 16 25 Si 0.88 22.36 27.74 -169.99 -4.71 17.65 16 26 H -0.28 -7.24 7.11 56.52 0.40 -6.84 16 27 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 28 H -0.28 -6.42 6.52 56.52 0.37 -6.05 16 29 C 0.10 1.35 5.76 -2.40 -0.01 1.33 16 30 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.41 4.57 7.80 -40.82 -0.32 4.25 16 36 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.08 0.95 7.92 -51.92 -0.41 0.54 16 40 H 0.07 0.70 7.84 -51.93 -0.41 0.29 16 41 H 0.07 0.60 6.85 -51.93 -0.36 0.24 16 42 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.06 0.49 6.72 -51.93 -0.35 0.14 16 44 H 0.06 0.80 6.90 -51.93 -0.36 0.45 16 45 H 0.05 0.55 6.70 -51.93 -0.35 0.21 16 46 H 0.06 0.92 6.96 -51.93 -0.36 0.56 16 47 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 48 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 49 H 0.36 7.99 3.84 -40.82 -0.16 7.83 16 50 H 0.26 7.98 8.31 -40.82 -0.34 7.64 16 51 H 0.09 1.50 5.45 -51.93 -0.28 1.22 16 52 H 0.07 0.85 7.85 -51.93 -0.41 0.44 16 LS Contribution 409.52 15.07 6.17 6.17 Total: -1.00 -37.35 409.52 -7.10 -44.45 By element: Atomic # 1 Polarization: 19.42 SS G_CDS: -8.72 Total: 10.70 kcal Atomic # 6 Polarization: 10.54 SS G_CDS: 1.21 Total: 11.75 kcal Atomic # 7 Polarization: -65.14 SS G_CDS: -0.34 Total: -65.48 kcal Atomic # 8 Polarization: -24.54 SS G_CDS: -0.71 Total: -25.24 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -4.71 Total: 17.65 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -37.35 -7.10 -44.45 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181563328.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.216 kcal (2) G-P(sol) polarization free energy of solvation -37.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds