Wall clock time and date at job start Wed Apr 1 2020 01:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42905 * 114.00094 * 2 1 4 4 C 1.50703 * 109.47190 * 180.02562 * 3 2 1 5 5 O 1.21287 * 119.99521 * 359.97438 * 4 3 2 6 6 N 1.34772 * 120.00186 * 179.97438 * 4 3 2 7 7 C 1.46494 * 120.00128 * 179.97438 * 6 4 3 8 8 H 1.08997 * 109.47421 * 35.00049 * 7 6 4 9 9 C 1.53000 * 109.47199 * 275.00058 * 7 6 4 10 10 C 1.50701 * 109.47367 * 155.00347 * 7 6 4 11 11 O 1.21282 * 119.99933 * 26.46548 * 10 7 6 12 12 N 1.34776 * 120.00228 * 206.46946 * 10 7 6 13 13 C 1.48143 * 127.83972 * 175.20005 * 12 10 7 14 14 C 1.54384 * 104.61831 * 219.60641 * 13 12 10 15 15 H 1.09004 * 110.34538 * 95.00364 * 14 13 12 16 16 C 1.53002 * 110.34354 * 217.26187 * 14 13 12 17 17 C 1.54286 * 104.96365 * 336.13291 * 14 13 12 18 18 C 1.52997 * 110.43235 * 241.08549 * 17 14 13 19 19 C 1.52995 * 110.34189 * 118.86972 * 17 14 13 20 20 N 1.46503 * 109.47026 * 183.01236 * 19 17 14 21 21 C 1.36937 * 120.00188 * 179.97438 * 20 19 17 22 22 H 1.08002 * 119.99852 * 359.72929 * 21 20 19 23 23 C 1.38810 * 119.99924 * 179.97438 * 21 20 19 24 24 N 1.31620 * 119.99578 * 180.02562 * 23 21 20 25 25 Si 1.86799 * 120.00311 * 0.02562 * 23 21 20 26 26 H 1.48498 * 109.47012 * 89.99824 * 25 23 21 27 27 H 1.48498 * 109.47086 * 209.99907 * 25 23 21 28 28 H 1.48502 * 109.47130 * 330.00052 * 25 23 21 29 29 C 1.48147 * 127.83447 * 355.22700 * 12 10 7 30 30 H 1.08997 * 109.47594 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47257 * 300.00636 * 1 2 3 32 32 H 1.09000 * 109.47247 * 59.99857 * 1 2 3 33 33 H 1.08990 * 109.47312 * 59.99684 * 3 2 1 34 34 H 1.09000 * 109.46683 * 299.99562 * 3 2 1 35 35 H 0.97002 * 119.99987 * 0.02562 * 6 4 3 36 36 H 1.09004 * 109.46984 * 64.04188 * 9 7 6 37 37 H 1.09002 * 109.46985 * 184.03677 * 9 7 6 38 38 H 1.09000 * 109.47343 * 304.03745 * 9 7 6 39 39 H 1.09008 * 110.40980 * 338.39186 * 13 12 10 40 40 H 1.09003 * 110.40826 * 100.70195 * 13 12 10 41 41 H 1.09005 * 109.47403 * 175.53606 * 16 14 13 42 42 H 1.09003 * 109.47292 * 295.53935 * 16 14 13 43 43 H 1.08998 * 109.47159 * 55.53770 * 16 14 13 44 44 H 1.08997 * 109.47425 * 298.46097 * 18 17 14 45 45 H 1.09003 * 109.47231 * 58.46508 * 18 17 14 46 46 H 1.09005 * 109.47126 * 178.46306 * 18 17 14 47 47 H 1.09001 * 109.47517 * 63.01314 * 19 17 14 48 48 H 1.09002 * 109.47190 * 303.00833 * 19 17 14 49 49 H 0.97003 * 119.99833 * 0.02562 * 20 19 17 50 50 H 0.97004 * 119.99690 * 180.02562 * 24 23 21 51 51 H 1.08997 * 110.40952 * 21.60996 * 29 12 10 52 52 H 1.09000 * 110.50582 * 259.22456 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 8 4.0340 0.0915 -0.0006 6 7 4.2765 2.2968 -0.0013 7 6 5.7369 2.1811 -0.0013 8 1 6.0326 1.3129 -0.5903 9 6 6.2355 2.0162 1.4357 10 6 6.3393 3.4248 -0.6024 11 8 5.7361 4.4758 -0.5527 12 7 7.5484 3.3692 -1.1953 13 6 8.2551 4.4499 -1.9214 14 6 8.9105 3.7445 -3.1282 15 1 8.2698 3.8226 -4.0066 16 6 10.2857 4.3504 -3.4159 17 6 9.0536 2.2697 -2.6981 18 6 10.5266 1.8563 -2.6897 19 6 8.2529 1.3626 -3.6345 20 7 8.3433 -0.0230 -3.1674 21 6 7.7010 -1.0198 -3.8522 22 1 7.1241 -0.7838 -4.7343 23 6 7.7871 -2.3327 -3.4099 24 7 7.1701 -3.2908 -4.0685 25 14 8.7786 -2.7397 -1.8800 26 1 7.9012 -2.6562 -0.6848 27 1 9.3266 -4.1149 -1.9967 28 1 9.8961 -1.7715 -1.7422 29 6 8.4720 2.2132 -1.2690 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3634 0.5139 -0.8900 33 1 1.6886 1.8464 0.8899 34 1 1.6886 1.8463 -0.8900 35 1 3.8594 3.1725 -0.0009 36 1 5.8573 1.0799 1.8463 37 1 7.3254 2.0021 1.4428 38 1 5.8790 2.8490 2.0419 39 1 7.5469 5.2056 -2.2615 40 1 9.0153 4.9020 -1.2842 41 1 10.7685 3.7915 -4.2176 42 1 10.1682 5.3911 -3.7181 43 1 10.9001 4.3003 -2.5170 44 1 10.9362 1.9502 -3.6954 45 1 11.0815 2.5027 -2.0096 46 1 10.6117 0.8215 -2.3579 47 1 8.6589 1.4330 -4.6436 48 1 7.2092 1.6768 -3.6400 49 1 8.8576 -0.2342 -2.3725 50 1 7.2300 -4.2082 -3.7592 51 1 7.9275 1.2813 -1.1169 52 1 9.2677 2.3124 -0.5307 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181563328.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:20:57 Heat of formation + Delta-G solvation = -119.249835 kcal Electronic energy + Delta-G solvation = -32043.162201 eV Core-core repulsion = 27849.602970 eV Total energy + Delta-G solvation = -4193.559231 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.86858 -40.91011 -39.68560 -38.45260 -36.62744 -36.12623 -34.77096 -33.54866 -32.37862 -31.44152 -29.52196 -28.38560 -27.60653 -26.90058 -26.81313 -25.21482 -24.49740 -22.40271 -21.72361 -20.70866 -20.22514 -19.34073 -18.99846 -17.96735 -17.69737 -17.32926 -17.00327 -16.69161 -16.61437 -16.32938 -16.17309 -15.76904 -15.43999 -15.35743 -15.25802 -14.90592 -14.68684 -14.44958 -14.23310 -14.07142 -13.72711 -13.64394 -13.44924 -13.21383 -13.16308 -13.04228 -12.94216 -12.76251 -12.69551 -12.57631 -12.38270 -12.27201 -12.11065 -11.89028 -11.65938 -11.37415 -11.21913 -11.13415 -11.02896 -10.97592 -10.80272 -10.37805 -9.85697 -9.31046 -8.04386 -5.37334 1.17676 1.30816 1.40552 1.44992 1.46706 1.54411 2.01190 2.46877 3.06281 3.13372 3.28151 3.39082 3.57948 3.65196 3.66893 3.91544 3.93762 3.96828 4.12143 4.15361 4.22145 4.30619 4.32696 4.46970 4.48500 4.54578 4.55130 4.57280 4.65087 4.71450 4.74834 4.81630 4.84265 4.87411 4.96554 5.01266 5.02162 5.10115 5.15015 5.22431 5.28028 5.35933 5.42465 5.64010 5.73142 5.99507 6.19070 6.30909 6.38992 6.84200 7.06977 7.09384 7.81399 8.01347 9.17640 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.007477 B = 0.004832 C = 0.003295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3743.875242 B = 5792.829889 C = 8494.952324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.411 6.411 3 C 0.050 3.950 4 C 0.505 3.495 5 O -0.568 6.568 6 N -0.703 5.703 7 C 0.124 3.876 8 H 0.082 0.918 9 C -0.147 4.147 10 C 0.541 3.459 11 O -0.562 6.562 12 N -0.613 5.613 13 C 0.112 3.888 14 C -0.089 4.089 15 H 0.071 0.929 16 C -0.136 4.136 17 C -0.074 4.074 18 C -0.133 4.133 19 C 0.172 3.828 20 N -0.749 5.749 21 C -0.233 4.233 22 H 0.048 0.952 23 C -0.062 4.062 24 N -0.984 5.984 25 Si 0.946 3.054 26 H -0.287 1.287 27 H -0.293 1.293 28 H -0.235 1.235 29 C 0.099 3.901 30 H 0.091 0.909 31 H 0.067 0.933 32 H 0.058 0.942 33 H 0.121 0.879 34 H 0.106 0.894 35 H 0.420 0.580 36 H 0.061 0.939 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.076 0.924 40 H 0.101 0.899 41 H 0.063 0.937 42 H 0.068 0.932 43 H 0.077 0.923 44 H 0.068 0.932 45 H 0.092 0.908 46 H 0.040 0.960 47 H 0.026 0.974 48 H 0.002 0.998 49 H 0.368 0.632 50 H 0.257 0.743 51 H 0.064 0.936 52 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.658 21.185 11.577 24.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.330 6.330 3 C -0.029 4.029 4 C 0.292 3.708 5 O -0.445 6.445 6 N -0.360 5.360 7 C 0.016 3.984 8 H 0.100 0.900 9 C -0.206 4.206 10 C 0.329 3.671 11 O -0.442 6.442 12 N -0.345 5.345 13 C -0.009 4.009 14 C -0.109 4.109 15 H 0.089 0.911 16 C -0.193 4.193 17 C -0.075 4.075 18 C -0.190 4.190 19 C 0.046 3.954 20 N -0.395 5.395 21 C -0.364 4.364 22 H 0.067 0.933 23 C -0.254 4.254 24 N -0.635 5.635 25 Si 0.773 3.227 26 H -0.214 1.214 27 H -0.220 1.220 28 H -0.158 1.158 29 C -0.024 4.024 30 H 0.110 0.890 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.139 0.861 34 H 0.124 0.876 35 H 0.259 0.741 36 H 0.080 0.920 37 H 0.104 0.896 38 H 0.101 0.899 39 H 0.094 0.906 40 H 0.119 0.881 41 H 0.082 0.918 42 H 0.087 0.913 43 H 0.096 0.904 44 H 0.087 0.913 45 H 0.111 0.889 46 H 0.059 0.941 47 H 0.044 0.956 48 H 0.020 0.980 49 H 0.202 0.798 50 H 0.065 0.935 51 H 0.082 0.918 52 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -0.727 20.728 11.473 23.702 hybrid contribution -0.450 -0.767 0.195 0.911 sum -1.178 19.961 11.668 23.151 Atomic orbital electron populations 1.23049 0.78053 1.04142 1.01850 1.88002 1.22435 1.26745 1.95816 1.22336 0.88036 0.86873 1.05661 1.21148 0.90684 0.83674 0.75263 1.90807 1.75699 1.28537 1.49480 1.45537 1.04956 1.09829 1.75669 1.20718 0.81792 0.96238 0.99672 0.90015 1.22020 1.02661 1.03368 0.92522 1.20008 0.79973 0.89526 0.77546 1.90648 1.61365 1.31798 1.60393 1.48877 1.16673 1.15495 1.53415 1.22626 0.95945 0.89584 0.92744 1.22096 0.99241 0.92094 0.97440 0.91097 1.21869 0.93799 1.00728 1.02920 1.21687 0.96941 0.95269 0.93627 1.21910 0.92573 1.01040 1.03467 1.20751 0.95889 0.82818 0.95947 1.42636 1.61407 1.03406 1.32066 1.18940 1.22979 0.87639 1.06852 0.93349 1.25503 1.02011 0.95488 1.02356 1.69889 1.49755 1.00419 1.43410 0.85541 0.79632 0.77915 0.79624 1.21354 1.21979 1.15841 1.22845 0.93011 0.88767 0.97782 0.89037 0.91456 0.92350 0.86126 0.87615 0.74133 0.91966 0.89602 0.89942 0.90554 0.88054 0.91796 0.91293 0.90399 0.91319 0.88938 0.94080 0.95577 0.98037 0.79790 0.93469 0.91786 0.87179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 11.01 113.37 1.25 1.68 16 2 O -0.41 -11.86 10.24 -129.94 -1.33 -13.19 16 3 C 0.05 1.11 6.42 71.24 0.46 1.57 16 4 C 0.51 16.06 7.87 87.66 0.69 16.75 16 5 O -0.57 -25.38 16.16 15.99 0.26 -25.12 16 6 N -0.70 -18.93 5.05 -446.11 -2.25 -21.18 16 7 C 0.12 3.65 2.48 44.25 0.11 3.76 16 8 H 0.08 3.06 6.23 -2.39 -0.01 3.04 16 9 C -0.15 -3.52 9.47 71.98 0.68 -2.84 16 10 C 0.54 15.31 7.11 87.66 0.62 15.93 16 11 O -0.56 -17.26 16.33 -3.04 -0.05 -17.31 16 12 N -0.61 -15.34 3.32 -807.94 -2.68 -18.02 16 13 C 0.11 2.19 6.57 86.53 0.57 2.76 16 14 C -0.09 -1.76 3.31 -9.89 -0.03 -1.79 16 15 H 0.07 1.61 7.71 -2.38 -0.02 1.59 16 16 C -0.14 -1.80 7.95 71.98 0.57 -1.23 16 17 C -0.07 -1.89 0.73 -51.27 -0.04 -1.93 16 18 C -0.13 -2.89 7.10 71.98 0.51 -2.38 16 19 C 0.17 6.51 4.96 86.38 0.43 6.93 16 20 N -0.75 -34.98 4.56 -343.45 -1.57 -36.55 16 21 C -0.23 -13.86 10.47 84.03 0.88 -12.98 16 22 H 0.05 3.20 8.06 -2.91 -0.02 3.17 16 23 C -0.06 -3.84 5.50 84.86 0.47 -3.37 16 24 N -0.98 -66.30 13.97 21.65 0.30 -66.00 16 25 Si 0.95 47.03 27.74 68.60 1.90 48.93 16 26 H -0.29 -14.54 7.11 99.48 0.71 -13.84 16 27 H -0.29 -14.65 7.11 99.48 0.71 -13.95 16 28 H -0.23 -9.90 6.52 99.48 0.65 -9.25 16 29 C 0.10 2.47 5.76 86.54 0.50 2.97 16 30 H 0.09 1.54 8.14 -2.39 -0.02 1.53 16 31 H 0.07 0.81 8.14 -2.39 -0.02 0.80 16 32 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.42 9.02 7.80 -92.71 -0.72 8.30 16 36 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.08 1.60 7.92 -2.38 -0.02 1.58 16 40 H 0.10 1.45 7.84 -2.39 -0.02 1.43 16 41 H 0.06 0.91 6.85 -2.38 -0.02 0.90 16 42 H 0.07 0.74 8.14 -2.39 -0.02 0.73 16 43 H 0.08 0.80 6.72 -2.39 -0.02 0.78 16 44 H 0.07 1.47 6.90 -2.39 -0.02 1.45 16 45 H 0.09 1.35 6.70 -2.39 -0.02 1.33 16 46 H 0.04 1.08 6.96 -2.38 -0.02 1.06 16 47 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 48 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 49 H 0.37 16.05 3.84 -92.71 -0.36 15.70 16 50 H 0.26 16.51 8.31 -92.71 -0.77 15.73 16 51 H 0.06 2.04 5.45 -2.39 -0.01 2.02 16 52 H 0.11 2.03 7.85 -2.39 -0.02 2.02 16 Total: -1.00 -88.19 409.52 2.04 -86.15 By element: Atomic # 1 Polarization: 36.63 SS G_CDS: -0.21 Total: 36.42 kcal Atomic # 6 Polarization: 18.19 SS G_CDS: 7.67 Total: 25.85 kcal Atomic # 7 Polarization: -135.55 SS G_CDS: -6.20 Total: -141.75 kcal Atomic # 8 Polarization: -54.49 SS G_CDS: -1.12 Total: -55.61 kcal Atomic # 14 Polarization: 47.03 SS G_CDS: 1.90 Total: 48.93 kcal Total: -88.19 2.04 -86.15 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181563328.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.097 kcal (2) G-P(sol) polarization free energy of solvation -88.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds