Wall clock time and date at job start Wed Apr 1 2020 01:21:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 113.99851 * 2 1 4 4 C 1.50704 * 109.47187 * 179.97438 * 3 2 1 5 5 O 1.21284 * 119.99626 * 359.97438 * 4 3 2 6 6 N 1.34776 * 119.99774 * 179.97438 * 4 3 2 7 7 C 1.46505 * 119.99509 * 180.02562 * 6 4 3 8 8 H 1.09004 * 109.47286 * 324.99852 * 7 6 4 9 9 C 1.52993 * 109.47185 * 85.00065 * 7 6 4 10 10 C 1.50702 * 109.47033 * 205.00359 * 7 6 4 11 11 O 1.21283 * 119.99567 * 334.13815 * 10 7 6 12 12 N 1.34767 * 120.00369 * 154.14153 * 10 7 6 13 13 C 1.48152 * 127.84029 * 175.05937 * 12 10 7 14 14 C 1.54385 * 104.71925 * 140.35662 * 13 12 10 15 15 H 1.09002 * 110.34495 * 142.80064 * 14 13 12 16 16 C 1.53003 * 110.34628 * 265.05649 * 14 13 12 17 17 C 1.54595 * 104.81322 * 23.89949 * 14 13 12 18 18 C 1.53000 * 110.40763 * 241.06101 * 17 14 13 19 19 C 1.53003 * 110.33697 * 118.86843 * 17 14 13 20 20 N 1.46501 * 109.46995 * 182.97679 * 19 17 14 21 21 C 1.36930 * 120.00131 * 180.02562 * 20 19 17 22 22 H 1.08010 * 119.99969 * 359.97438 * 21 20 19 23 23 C 1.38809 * 120.00491 * 180.02562 * 21 20 19 24 24 N 1.31628 * 119.99797 * 359.97438 * 23 21 20 25 25 Si 1.86791 * 120.00544 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47224 * 89.99632 * 25 23 21 27 27 H 1.48503 * 109.47397 * 209.99921 * 25 23 21 28 28 H 1.48500 * 109.47045 * 330.00016 * 25 23 21 29 29 C 1.48148 * 127.83722 * 355.06826 * 12 10 7 30 30 H 1.08998 * 109.47230 * 59.99837 * 1 2 3 31 31 H 1.09007 * 109.47020 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47121 * 300.00033 * 1 2 3 33 33 H 1.09003 * 109.47126 * 59.99807 * 3 2 1 34 34 H 1.09004 * 109.47250 * 299.99891 * 3 2 1 35 35 H 0.97000 * 120.00525 * 0.02562 * 6 4 3 36 36 H 1.08995 * 109.47212 * 56.24666 * 9 7 6 37 37 H 1.08998 * 109.47055 * 176.24713 * 9 7 6 38 38 H 1.08998 * 109.47228 * 296.24684 * 9 7 6 39 39 H 1.09000 * 110.40655 * 259.20465 * 13 12 10 40 40 H 1.09004 * 110.40575 * 21.51881 * 13 12 10 41 41 H 1.09002 * 109.46823 * 58.55004 * 16 14 13 42 42 H 1.08997 * 109.47281 * 178.54696 * 16 14 13 43 43 H 1.08994 * 109.46851 * 298.54656 * 16 14 13 44 44 H 1.08999 * 109.47299 * 177.07079 * 18 17 14 45 45 H 1.09006 * 109.47169 * 297.06333 * 18 17 14 46 46 H 1.09003 * 109.47067 * 57.06280 * 18 17 14 47 47 H 1.08995 * 109.46982 * 302.97316 * 19 17 14 48 48 H 1.08995 * 109.47098 * 62.97513 * 19 17 14 49 49 H 0.96999 * 119.99742 * 359.97438 * 20 19 17 50 50 H 0.96998 * 119.99970 * 180.02562 * 24 23 21 51 51 H 1.08992 * 110.40515 * 338.36107 * 29 12 10 52 52 H 1.08992 * 110.40979 * 100.80027 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 8 4.0341 0.0916 0.0015 6 7 4.2764 2.2969 0.0002 7 6 5.7368 2.1812 0.0003 8 1 6.0326 1.3136 0.5901 9 6 6.2353 2.0151 -1.4366 10 6 6.3393 3.4255 0.6004 11 8 5.7311 4.4740 0.5595 12 7 7.5537 3.3730 1.1823 13 6 8.3475 4.4968 1.7317 14 6 8.9786 3.9362 3.0244 15 1 9.9889 4.3250 3.1523 16 6 8.1137 4.2907 4.2357 17 6 9.0118 2.4047 2.8160 18 6 8.1725 1.7025 3.8853 19 6 10.4537 1.8942 2.8528 20 7 10.4690 0.4543 2.5831 21 6 11.6570 -0.2263 2.5650 22 1 12.5829 0.2985 2.7492 23 6 11.6716 -1.5905 2.3090 24 7 10.5433 -2.2300 2.0841 25 14 13.2922 -2.5189 2.2836 26 1 13.5952 -3.0233 3.6470 27 1 13.1923 -3.6637 1.3430 28 1 14.3778 -1.6076 1.8405 29 6 8.3979 2.1786 1.4176 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.6885 1.8464 0.8900 34 1 1.6886 1.8464 -0.8900 35 1 3.8592 3.1727 -0.0001 36 1 5.8830 2.8500 -2.0422 37 1 7.3251 1.9960 -1.4432 38 1 5.8530 1.0810 -1.8481 39 1 9.1244 4.7936 1.0271 40 1 7.7000 5.3432 1.9610 41 1 7.1120 3.8835 4.0985 42 1 8.5582 3.8666 5.1361 43 1 8.0549 5.3745 4.3354 44 1 8.1639 0.6295 3.6938 45 1 8.6035 1.8926 4.8683 46 1 7.1523 2.0852 3.8557 47 1 11.0419 2.4120 2.0952 48 1 10.8813 2.0841 3.8372 49 1 9.6374 -0.0170 2.4181 50 1 10.5534 -3.1833 1.9055 51 1 7.7881 1.2752 1.4119 52 1 9.1826 2.1133 0.6640 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181563332.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:21:01 Heat of formation + Delta-G solvation = -97.690519 kcal Electronic energy + Delta-G solvation = -31408.125139 eV Core-core repulsion = 27215.500791 eV Total energy + Delta-G solvation = -4192.624348 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.74465 -39.82776 -38.50582 -37.59325 -35.05558 -34.76203 -33.29391 -31.74576 -31.18950 -29.64885 -28.76398 -27.51806 -26.19429 -25.71914 -25.61069 -24.06825 -23.06690 -21.17068 -20.65703 -19.57503 -18.62779 -18.04047 -17.14885 -17.04396 -16.59569 -16.50582 -15.99896 -15.79146 -15.22465 -14.93309 -14.53614 -14.43665 -14.21519 -14.11495 -14.02933 -13.47776 -13.33157 -13.09660 -13.07873 -12.90413 -12.66351 -12.49392 -12.36999 -12.20403 -11.98944 -11.77528 -11.68774 -11.49920 -11.40877 -11.20686 -11.01264 -10.82167 -10.43819 -10.39564 -10.22913 -10.12718 -10.02823 -9.95331 -9.82814 -9.62722 -9.31684 -8.88993 -8.70743 -6.93328 -5.76450 -3.05695 2.27657 2.45017 2.54705 3.02564 3.43865 3.49101 3.51010 3.79815 4.25446 4.49000 4.52816 4.67877 4.73229 4.76393 4.80594 4.88558 4.98464 4.99723 5.02741 5.04922 5.29140 5.35065 5.35935 5.45717 5.50339 5.56222 5.60015 5.62282 5.66604 5.81070 5.86131 5.90125 5.98512 6.00013 6.03987 6.08486 6.15460 6.20230 6.21800 6.39646 6.52787 6.63580 6.64641 6.73137 6.81465 7.28966 7.48097 7.69859 7.97186 8.05388 8.41793 9.53361 10.09514 10.44005 11.45955 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.009399 B = 0.003110 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2978.168128 B = 9001.233154 C =10904.004398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.365 6.365 3 C 0.046 3.954 4 C 0.513 3.487 5 O -0.509 6.509 6 N -0.715 5.715 7 C 0.130 3.870 8 H 0.114 0.886 9 C -0.156 4.156 10 C 0.536 3.464 11 O -0.550 6.550 12 N -0.612 5.612 13 C 0.110 3.890 14 C -0.097 4.097 15 H 0.089 0.911 16 C -0.141 4.141 17 C -0.074 4.074 18 C -0.134 4.134 19 C 0.168 3.832 20 N -0.730 5.730 21 C -0.241 4.241 22 H 0.069 0.931 23 C -0.011 4.011 24 N -0.930 5.930 25 Si 0.905 3.095 26 H -0.290 1.290 27 H -0.292 1.292 28 H -0.283 1.283 29 C 0.108 3.892 30 H 0.043 0.957 31 H 0.092 0.908 32 H 0.044 0.956 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.408 0.592 36 H 0.063 0.937 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.081 0.919 41 H 0.057 0.943 42 H 0.061 0.939 43 H 0.049 0.951 44 H 0.067 0.933 45 H 0.058 0.942 46 H 0.047 0.953 47 H 0.021 0.979 48 H 0.023 0.977 49 H 0.384 0.616 50 H 0.256 0.744 51 H 0.084 0.916 52 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.313 14.454 -2.978 21.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.283 6.283 3 C -0.034 4.034 4 C 0.298 3.702 5 O -0.383 6.383 6 N -0.372 5.372 7 C 0.022 3.978 8 H 0.132 0.868 9 C -0.214 4.214 10 C 0.324 3.676 11 O -0.429 6.429 12 N -0.345 5.345 13 C -0.013 4.013 14 C -0.117 4.117 15 H 0.107 0.893 16 C -0.198 4.198 17 C -0.075 4.075 18 C -0.191 4.191 19 C 0.040 3.960 20 N -0.375 5.375 21 C -0.373 4.373 22 H 0.087 0.913 23 C -0.208 4.208 24 N -0.579 5.579 25 Si 0.737 3.263 26 H -0.218 1.218 27 H -0.218 1.218 28 H -0.208 1.208 29 C -0.014 4.014 30 H 0.062 0.938 31 H 0.110 0.890 32 H 0.062 0.938 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.245 0.755 36 H 0.082 0.918 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.091 0.909 40 H 0.100 0.900 41 H 0.076 0.924 42 H 0.080 0.920 43 H 0.069 0.931 44 H 0.086 0.914 45 H 0.077 0.923 46 H 0.066 0.934 47 H 0.039 0.961 48 H 0.041 0.959 49 H 0.219 0.781 50 H 0.066 0.934 51 H 0.102 0.898 52 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -16.080 13.974 -3.050 21.521 hybrid contribution 0.326 -0.113 -0.050 0.349 sum -15.754 13.860 -3.100 21.212 Atomic orbital electron populations 1.22846 0.80311 1.03421 1.00080 1.88040 1.19809 1.24999 1.95415 1.22188 0.91323 0.87139 1.02781 1.20259 0.88737 0.84428 0.76745 1.90799 1.74360 1.26221 1.46874 1.45655 1.05503 1.09591 1.76425 1.20759 0.80674 0.97389 0.99007 0.86817 1.22059 1.02330 1.03385 0.93643 1.20066 0.79940 0.90043 0.77553 1.90660 1.60542 1.31961 1.59729 1.48953 1.16885 1.11095 1.57533 1.22437 0.94240 0.89996 0.94583 1.22196 0.99993 0.95167 0.94332 0.89251 1.21895 0.99993 1.00410 0.97508 1.21759 0.97621 0.93823 0.94301 1.21885 0.98042 1.01131 0.98016 1.20719 0.90678 0.86822 0.97812 1.42375 1.07129 1.02228 1.85800 1.19181 0.86438 0.90804 1.40834 0.91259 1.24728 0.96786 0.96654 1.02608 1.69648 1.24474 1.08851 1.54890 0.86220 0.83164 0.79628 0.77323 1.21786 1.21793 1.20838 1.22732 0.93900 0.87425 0.97337 0.93822 0.88990 0.93772 0.90080 0.90085 0.75516 0.91767 0.90574 0.90462 0.90925 0.90036 0.92413 0.91980 0.93149 0.91447 0.92287 0.93378 0.96099 0.95878 0.78125 0.93433 0.89756 0.89610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.36 -4.27 10.24 -55.14 -0.56 -4.83 16 3 C 0.05 0.42 6.42 36.01 0.23 0.65 16 4 C 0.51 6.60 7.87 -10.98 -0.09 6.51 16 5 O -0.51 -9.03 16.16 -14.36 -0.23 -9.26 16 6 N -0.72 -8.17 5.05 -54.93 -0.28 -8.45 16 7 C 0.13 1.68 2.60 -69.08 -0.18 1.50 16 8 H 0.11 1.67 6.05 -51.93 -0.31 1.36 16 9 C -0.16 -1.84 9.47 37.15 0.35 -1.49 16 10 C 0.54 7.37 7.11 -10.99 -0.08 7.29 16 11 O -0.55 -8.47 16.27 5.55 0.09 -8.38 16 12 N -0.61 -8.12 3.32 -169.31 -0.56 -8.68 16 13 C 0.11 1.31 6.60 -2.41 -0.02 1.29 16 14 C -0.10 -1.16 3.32 -89.05 -0.30 -1.45 16 15 H 0.09 1.00 7.72 -51.93 -0.40 0.59 16 16 C -0.14 -1.55 7.94 37.16 0.29 -1.26 16 17 C -0.07 -1.08 0.74 -152.94 -0.11 -1.19 16 18 C -0.13 -2.02 7.09 37.16 0.26 -1.76 16 19 C 0.17 3.08 4.86 -4.04 -0.02 3.06 16 20 N -0.73 -17.25 5.12 -59.91 -0.31 -17.55 16 21 C -0.24 -6.50 9.99 -15.06 -0.15 -6.65 16 22 H 0.07 1.82 7.83 -52.48 -0.41 1.41 16 23 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 24 N -0.93 -27.60 13.06 55.49 0.72 -26.87 16 25 Si 0.91 22.13 29.55 -169.99 -5.02 17.11 16 26 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 27 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 28 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 29 C 0.11 1.58 5.38 -2.41 -0.01 1.56 16 30 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.41 3.92 7.79 -40.82 -0.32 3.60 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.08 0.97 7.57 -51.93 -0.39 0.58 16 41 H 0.06 0.69 6.54 -51.93 -0.34 0.35 16 42 H 0.06 0.68 7.09 -51.93 -0.37 0.31 16 43 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.07 1.20 6.99 -51.93 -0.36 0.83 16 45 H 0.06 0.86 7.08 -51.93 -0.37 0.49 16 46 H 0.05 0.67 6.55 -51.93 -0.34 0.33 16 47 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 48 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 49 H 0.38 9.55 6.27 -40.82 -0.26 9.30 16 50 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 51 H 0.08 1.31 6.33 -51.93 -0.33 0.98 16 52 H 0.09 1.32 7.86 -51.93 -0.41 0.91 16 LS Contribution 413.67 15.07 6.23 6.23 Total: -1.00 -34.20 413.67 -7.53 -41.73 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: -8.82 Total: 9.99 kcal Atomic # 6 Polarization: 7.77 SS G_CDS: 1.21 Total: 8.97 kcal Atomic # 7 Polarization: -61.13 SS G_CDS: -0.42 Total: -61.56 kcal Atomic # 8 Polarization: -21.77 SS G_CDS: -0.71 Total: -22.47 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -34.20 -7.53 -41.73 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181563332.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.965 kcal (2) G-P(sol) polarization free energy of solvation -34.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds