Wall clock time and date at job start Wed Apr 1 2020 01:21:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 113.99851 * 2 1 4 4 C 1.50704 * 109.47187 * 179.97438 * 3 2 1 5 5 O 1.21284 * 119.99626 * 359.97438 * 4 3 2 6 6 N 1.34776 * 119.99774 * 179.97438 * 4 3 2 7 7 C 1.46505 * 119.99509 * 180.02562 * 6 4 3 8 8 H 1.09004 * 109.47286 * 324.99852 * 7 6 4 9 9 C 1.52993 * 109.47185 * 85.00065 * 7 6 4 10 10 C 1.50702 * 109.47033 * 205.00359 * 7 6 4 11 11 O 1.21283 * 119.99567 * 334.13815 * 10 7 6 12 12 N 1.34767 * 120.00369 * 154.14153 * 10 7 6 13 13 C 1.48152 * 127.84029 * 175.05937 * 12 10 7 14 14 C 1.54385 * 104.71925 * 140.35662 * 13 12 10 15 15 H 1.09002 * 110.34495 * 142.80064 * 14 13 12 16 16 C 1.53003 * 110.34628 * 265.05649 * 14 13 12 17 17 C 1.54595 * 104.81322 * 23.89949 * 14 13 12 18 18 C 1.53000 * 110.40763 * 241.06101 * 17 14 13 19 19 C 1.53003 * 110.33697 * 118.86843 * 17 14 13 20 20 N 1.46501 * 109.46995 * 182.97679 * 19 17 14 21 21 C 1.36930 * 120.00131 * 180.02562 * 20 19 17 22 22 H 1.08010 * 119.99969 * 359.97438 * 21 20 19 23 23 C 1.38809 * 120.00491 * 180.02562 * 21 20 19 24 24 N 1.31628 * 119.99797 * 359.97438 * 23 21 20 25 25 Si 1.86791 * 120.00544 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47224 * 89.99632 * 25 23 21 27 27 H 1.48503 * 109.47397 * 209.99921 * 25 23 21 28 28 H 1.48500 * 109.47045 * 330.00016 * 25 23 21 29 29 C 1.48148 * 127.83722 * 355.06826 * 12 10 7 30 30 H 1.08998 * 109.47230 * 59.99837 * 1 2 3 31 31 H 1.09007 * 109.47020 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47121 * 300.00033 * 1 2 3 33 33 H 1.09003 * 109.47126 * 59.99807 * 3 2 1 34 34 H 1.09004 * 109.47250 * 299.99891 * 3 2 1 35 35 H 0.97000 * 120.00525 * 0.02562 * 6 4 3 36 36 H 1.08995 * 109.47212 * 56.24666 * 9 7 6 37 37 H 1.08998 * 109.47055 * 176.24713 * 9 7 6 38 38 H 1.08998 * 109.47228 * 296.24684 * 9 7 6 39 39 H 1.09000 * 110.40655 * 259.20465 * 13 12 10 40 40 H 1.09004 * 110.40575 * 21.51881 * 13 12 10 41 41 H 1.09002 * 109.46823 * 58.55004 * 16 14 13 42 42 H 1.08997 * 109.47281 * 178.54696 * 16 14 13 43 43 H 1.08994 * 109.46851 * 298.54656 * 16 14 13 44 44 H 1.08999 * 109.47299 * 177.07079 * 18 17 14 45 45 H 1.09006 * 109.47169 * 297.06333 * 18 17 14 46 46 H 1.09003 * 109.47067 * 57.06280 * 18 17 14 47 47 H 1.08995 * 109.46982 * 302.97316 * 19 17 14 48 48 H 1.08995 * 109.47098 * 62.97513 * 19 17 14 49 49 H 0.96999 * 119.99742 * 359.97438 * 20 19 17 50 50 H 0.96998 * 119.99970 * 180.02562 * 24 23 21 51 51 H 1.08992 * 110.40515 * 338.36107 * 29 12 10 52 52 H 1.08992 * 110.40979 * 100.80027 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 8 4.0341 0.0916 0.0015 6 7 4.2764 2.2969 0.0002 7 6 5.7368 2.1812 0.0003 8 1 6.0326 1.3136 0.5901 9 6 6.2353 2.0151 -1.4366 10 6 6.3393 3.4255 0.6004 11 8 5.7311 4.4740 0.5595 12 7 7.5537 3.3730 1.1823 13 6 8.3475 4.4968 1.7317 14 6 8.9786 3.9362 3.0244 15 1 9.9889 4.3250 3.1523 16 6 8.1137 4.2907 4.2357 17 6 9.0118 2.4047 2.8160 18 6 8.1725 1.7025 3.8853 19 6 10.4537 1.8942 2.8528 20 7 10.4690 0.4543 2.5831 21 6 11.6570 -0.2263 2.5650 22 1 12.5829 0.2985 2.7492 23 6 11.6716 -1.5905 2.3090 24 7 10.5433 -2.2300 2.0841 25 14 13.2922 -2.5189 2.2836 26 1 13.5952 -3.0233 3.6470 27 1 13.1923 -3.6637 1.3430 28 1 14.3778 -1.6076 1.8405 29 6 8.3979 2.1786 1.4176 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.6885 1.8464 0.8900 34 1 1.6886 1.8464 -0.8900 35 1 3.8592 3.1727 -0.0001 36 1 5.8830 2.8500 -2.0422 37 1 7.3251 1.9960 -1.4432 38 1 5.8530 1.0810 -1.8481 39 1 9.1244 4.7936 1.0271 40 1 7.7000 5.3432 1.9610 41 1 7.1120 3.8835 4.0985 42 1 8.5582 3.8666 5.1361 43 1 8.0549 5.3745 4.3354 44 1 8.1639 0.6295 3.6938 45 1 8.6035 1.8926 4.8683 46 1 7.1523 2.0852 3.8557 47 1 11.0419 2.4120 2.0952 48 1 10.8813 2.0841 3.8372 49 1 9.6374 -0.0170 2.4181 50 1 10.5534 -3.1833 1.9055 51 1 7.7881 1.2752 1.4119 52 1 9.1826 2.1133 0.6640 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181563332.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:21:00 Heat of formation + Delta-G solvation = -121.977904 kcal Electronic energy + Delta-G solvation = -31409.178319 eV Core-core repulsion = 27215.500791 eV Total energy + Delta-G solvation = -4193.677528 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.85057 -40.88214 -39.62001 -38.41850 -36.46323 -36.10368 -34.63019 -33.25737 -32.28138 -31.19037 -29.50087 -28.66998 -27.21065 -26.88694 -26.76807 -25.35950 -24.57186 -22.39618 -21.69997 -20.66651 -19.91844 -19.15020 -18.84396 -17.92340 -17.65087 -17.32328 -17.20402 -16.69205 -16.49387 -16.21159 -15.86393 -15.62420 -15.38968 -15.29632 -15.21395 -14.80475 -14.72265 -14.38929 -14.18475 -13.97725 -13.82613 -13.57348 -13.35846 -13.18236 -13.09138 -13.02929 -12.88414 -12.71325 -12.59769 -12.51989 -12.38080 -12.35624 -12.07033 -11.94021 -11.52631 -11.37811 -11.25879 -11.07441 -10.99263 -10.88419 -10.77607 -10.35921 -9.83109 -8.93081 -7.90007 -5.17643 1.23821 1.46779 1.49735 1.50344 1.50988 1.58840 2.03221 2.59201 3.08246 3.14134 3.42202 3.46425 3.62101 3.66976 3.78427 3.93945 3.96061 4.16468 4.17344 4.25086 4.25336 4.27573 4.33705 4.49763 4.50444 4.55992 4.57703 4.58026 4.66345 4.76366 4.78032 4.83743 4.87192 4.87703 4.96733 5.02147 5.03410 5.07722 5.14512 5.17426 5.25109 5.35887 5.42342 5.55070 5.57479 6.01181 6.31517 6.34358 6.40902 6.86300 7.09519 7.39147 8.15990 8.37937 9.33040 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.009399 B = 0.003110 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2978.168128 B = 9001.233154 C =10904.004398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.408 6.408 3 C 0.049 3.951 4 C 0.509 3.491 5 O -0.568 6.568 6 N -0.703 5.703 7 C 0.129 3.871 8 H 0.091 0.909 9 C -0.149 4.149 10 C 0.541 3.459 11 O -0.562 6.562 12 N -0.609 5.609 13 C 0.109 3.891 14 C -0.088 4.088 15 H 0.106 0.894 16 C -0.137 4.137 17 C -0.067 4.067 18 C -0.125 4.125 19 C 0.167 3.833 20 N -0.741 5.741 21 C -0.237 4.237 22 H 0.077 0.923 23 C -0.075 4.075 24 N -0.968 5.968 25 Si 0.967 3.033 26 H -0.290 1.290 27 H -0.300 1.300 28 H -0.268 1.268 29 C 0.116 3.884 30 H 0.062 0.938 31 H 0.092 0.908 32 H 0.060 0.940 33 H 0.110 0.890 34 H 0.116 0.884 35 H 0.420 0.580 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.065 0.935 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.045 0.955 42 H 0.063 0.937 43 H 0.070 0.930 44 H 0.033 0.967 45 H 0.065 0.935 46 H 0.058 0.942 47 H 0.030 0.970 48 H 0.026 0.974 49 H 0.375 0.625 50 H 0.249 0.751 51 H 0.067 0.933 52 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.590 17.221 -2.807 24.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.327 6.327 3 C -0.030 4.030 4 C 0.297 3.703 5 O -0.446 6.446 6 N -0.359 5.359 7 C 0.020 3.980 8 H 0.108 0.892 9 C -0.207 4.207 10 C 0.329 3.671 11 O -0.442 6.442 12 N -0.341 5.341 13 C -0.013 4.013 14 C -0.107 4.107 15 H 0.124 0.876 16 C -0.194 4.194 17 C -0.069 4.069 18 C -0.182 4.182 19 C 0.041 3.959 20 N -0.384 5.384 21 C -0.369 4.369 22 H 0.095 0.905 23 C -0.267 4.267 24 N -0.619 5.619 25 Si 0.797 3.203 26 H -0.218 1.218 27 H -0.227 1.227 28 H -0.193 1.193 29 C -0.007 4.007 30 H 0.081 0.919 31 H 0.111 0.889 32 H 0.078 0.922 33 H 0.128 0.872 34 H 0.133 0.867 35 H 0.259 0.741 36 H 0.098 0.902 37 H 0.094 0.906 38 H 0.084 0.916 39 H 0.105 0.895 40 H 0.106 0.894 41 H 0.064 0.936 42 H 0.082 0.918 43 H 0.089 0.911 44 H 0.052 0.948 45 H 0.084 0.916 46 H 0.077 0.923 47 H 0.047 0.953 48 H 0.044 0.956 49 H 0.208 0.792 50 H 0.057 0.943 51 H 0.085 0.915 52 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -16.352 16.836 -2.865 23.644 hybrid contribution 0.390 -0.881 -0.077 0.966 sum -15.962 15.955 -2.942 22.760 Atomic orbital electron populations 1.23044 0.78107 1.04166 1.01782 1.87982 1.22311 1.26624 1.95820 1.22334 0.88078 0.86914 1.05675 1.21081 0.90531 0.83585 0.75149 1.90773 1.75676 1.28369 1.49754 1.45578 1.04798 1.10020 1.75521 1.20671 0.81779 0.96279 0.99237 0.89152 1.21994 1.02243 1.03410 0.93090 1.20053 0.79898 0.89845 0.77325 1.90652 1.60815 1.32336 1.60361 1.48924 1.16747 1.11082 1.57348 1.22597 0.94474 0.89480 0.94730 1.22180 1.01279 0.92340 0.94936 0.87610 1.21861 0.98973 1.01716 0.96898 1.21636 0.95160 0.96000 0.94062 1.21793 0.98952 0.99009 0.98474 1.20876 0.93244 0.84000 0.97791 1.42575 1.05853 1.04380 1.85624 1.19598 0.87724 0.91103 1.38513 0.90522 1.25485 0.99657 0.97820 1.03754 1.69814 1.26468 1.08521 1.57098 0.85224 0.80024 0.78167 0.76854 1.21758 1.22689 1.19327 1.22509 0.93570 0.87428 0.97198 0.91902 0.88904 0.92176 0.87250 0.86664 0.74100 0.90207 0.90648 0.91563 0.89508 0.89352 0.93554 0.91849 0.91129 0.94806 0.91646 0.92278 0.95257 0.95570 0.79239 0.94261 0.91487 0.90404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 11.01 113.37 1.25 1.56 16 2 O -0.41 -9.32 10.24 -129.94 -1.33 -10.65 16 3 C 0.05 0.82 6.42 71.24 0.46 1.28 16 4 C 0.51 13.15 7.87 87.66 0.69 13.84 16 5 O -0.57 -21.20 16.16 15.99 0.26 -20.94 16 6 N -0.70 -15.72 5.05 -446.08 -2.25 -17.97 16 7 C 0.13 3.38 2.60 44.24 0.11 3.50 16 8 H 0.09 2.84 6.05 -2.38 -0.01 2.83 16 9 C -0.15 -3.56 9.47 71.98 0.68 -2.88 16 10 C 0.54 14.39 7.11 87.66 0.62 15.01 16 11 O -0.56 -16.26 16.27 -3.04 -0.05 -16.30 16 12 N -0.61 -15.54 3.32 -807.96 -2.68 -18.22 16 13 C 0.11 2.31 6.60 86.53 0.57 2.88 16 14 C -0.09 -1.87 3.32 -9.78 -0.03 -1.90 16 15 H 0.11 1.98 7.72 -2.39 -0.02 1.96 16 16 C -0.14 -2.65 7.94 71.98 0.57 -2.07 16 17 C -0.07 -1.92 0.74 -51.17 -0.04 -1.96 16 18 C -0.13 -3.79 7.09 71.98 0.51 -3.28 16 19 C 0.17 6.00 4.86 86.38 0.42 6.42 16 20 N -0.74 -35.38 5.12 -343.46 -1.76 -37.14 16 21 C -0.24 -12.78 9.99 84.03 0.84 -11.94 16 22 H 0.08 3.94 7.83 -2.91 -0.02 3.92 16 23 C -0.07 -4.25 5.50 84.86 0.47 -3.78 16 24 N -0.97 -59.12 13.06 21.65 0.28 -58.84 16 25 Si 0.97 45.94 29.55 68.60 2.03 47.96 16 26 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 27 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 28 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 29 C 0.12 3.40 5.38 86.53 0.47 3.86 16 30 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.09 1.09 8.14 -2.38 -0.02 1.07 16 32 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.12 1.13 8.14 -2.38 -0.02 1.11 16 35 H 0.42 7.39 7.79 -92.71 -0.72 6.67 16 36 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.09 1.83 7.57 -2.38 -0.02 1.81 16 41 H 0.05 1.00 6.54 -2.39 -0.02 0.99 16 42 H 0.06 1.22 7.09 -2.39 -0.02 1.20 16 43 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 44 H 0.03 1.24 6.99 -2.39 -0.02 1.22 16 45 H 0.06 1.87 7.08 -2.38 -0.02 1.85 16 46 H 0.06 1.64 6.55 -2.39 -0.02 1.62 16 47 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 48 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 49 H 0.37 19.31 6.27 -92.71 -0.58 18.73 16 50 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 51 H 0.07 2.21 6.33 -2.39 -0.02 2.20 16 52 H 0.08 2.42 7.86 -2.39 -0.02 2.40 16 Total: -1.00 -75.62 413.67 1.71 -73.91 By element: Atomic # 1 Polarization: 38.05 SS G_CDS: -0.38 Total: 37.67 kcal Atomic # 6 Polarization: 12.94 SS G_CDS: 7.59 Total: 20.53 kcal Atomic # 7 Polarization: -125.77 SS G_CDS: -6.41 Total: -132.18 kcal Atomic # 8 Polarization: -46.78 SS G_CDS: -1.12 Total: -47.90 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.96 kcal Total: -75.62 1.71 -73.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181563332.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.067 kcal (2) G-P(sol) polarization free energy of solvation -75.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds