Wall clock time and date at job start Wed Apr 1 2020 01:20:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 114.00414 * 2 1 4 4 C 1.50697 * 109.47323 * 179.97438 * 3 2 1 5 5 O 1.21282 * 120.00243 * 0.02562 * 4 3 2 6 6 N 1.34777 * 119.99810 * 180.02562 * 4 3 2 7 7 C 1.46506 * 119.99798 * 180.02562 * 6 4 3 8 8 C 1.52995 * 109.46907 * 179.97438 * 7 6 4 9 9 C 1.50703 * 109.47238 * 179.97438 * 8 7 6 10 10 O 1.21287 * 119.99513 * 0.02562 * 9 8 7 11 11 N 1.34777 * 120.00491 * 180.02562 * 9 8 7 12 12 C 1.48147 * 127.83544 * 359.97017 * 11 9 8 13 13 C 1.54379 * 104.61690 * 219.60855 * 12 11 9 14 14 H 1.09003 * 110.34301 * 95.01151 * 13 12 11 15 15 C 1.52999 * 110.34396 * 217.26393 * 13 12 11 16 16 C 1.54289 * 104.96389 * 336.13681 * 13 12 11 17 17 C 1.53002 * 110.42972 * 241.08385 * 16 13 12 18 18 C 1.52994 * 110.34121 * 118.87129 * 16 13 12 19 19 N 1.46510 * 109.46884 * 183.01219 * 18 16 13 20 20 C 1.36935 * 119.99776 * 180.02562 * 19 18 16 21 21 H 1.07997 * 120.00259 * 359.97438 * 20 19 18 22 22 C 1.38813 * 119.99472 * 179.97438 * 20 19 18 23 23 N 1.31618 * 120.00240 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99684 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.46845 * 90.00337 * 24 22 20 26 26 H 1.48503 * 109.47399 * 209.99827 * 24 22 20 27 27 H 1.48498 * 109.47295 * 330.00433 * 24 22 20 28 28 C 1.48146 * 127.83842 * 180.02562 * 11 9 8 29 29 H 1.08995 * 109.47092 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46911 * 300.00040 * 1 2 3 31 31 H 1.09005 * 109.46975 * 59.99453 * 1 2 3 32 32 H 1.09007 * 109.46709 * 60.00004 * 3 2 1 33 33 H 1.09002 * 109.47225 * 300.00634 * 3 2 1 34 34 H 0.96999 * 120.00297 * 0.02562 * 6 4 3 35 35 H 1.08997 * 109.47283 * 60.00008 * 7 6 4 36 36 H 1.09005 * 109.47143 * 299.99772 * 7 6 4 37 37 H 1.09007 * 109.47026 * 60.00488 * 8 7 6 38 38 H 1.08997 * 109.47831 * 299.99900 * 8 7 6 39 39 H 1.09002 * 110.40662 * 338.39606 * 12 11 9 40 40 H 1.09005 * 110.40245 * 100.70778 * 12 11 9 41 41 H 1.09000 * 109.47515 * 175.53790 * 15 13 12 42 42 H 1.09007 * 109.47444 * 295.53906 * 15 13 12 43 43 H 1.09001 * 109.47102 * 55.53583 * 15 13 12 44 44 H 1.08999 * 109.47343 * 298.46150 * 17 16 13 45 45 H 1.08996 * 109.47110 * 58.46619 * 17 16 13 46 46 H 1.08996 * 109.47016 * 178.46498 * 17 16 13 47 47 H 1.08995 * 109.47727 * 63.01231 * 18 16 13 48 48 H 1.09001 * 109.47087 * 303.00708 * 18 16 13 49 49 H 0.96998 * 119.99423 * 359.97438 * 19 18 16 50 50 H 0.97000 * 119.99789 * 359.97438 * 23 22 20 51 51 H 1.08996 * 110.40866 * 21.60582 * 28 11 9 52 52 H 1.08998 * 110.50427 * 259.22530 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 0.0006 5 8 4.0342 0.0914 0.0006 6 7 4.2765 2.2967 0.0013 7 6 5.7370 2.1810 0.0013 8 6 6.3593 3.5787 0.0014 9 6 7.8616 3.4597 0.0021 10 8 8.3832 2.3647 0.0020 11 7 8.6256 4.5700 0.0029 12 6 8.1769 5.9819 0.0025 13 6 9.1566 6.7018 -0.9489 14 1 8.7364 6.7590 -1.9531 15 6 9.4749 8.1031 -0.4238 16 6 10.4277 5.8272 -0.9483 17 6 11.6240 6.6241 -0.4241 18 6 10.7142 5.3045 -2.3573 19 7 11.8815 4.4197 -2.3219 20 6 12.3288 3.8301 -3.4740 21 1 11.8210 4.0169 -4.4087 22 6 13.4351 2.9923 -3.4405 23 7 14.0543 2.7650 -2.3015 24 14 14.0450 2.1873 -5.0120 25 1 15.0444 3.0707 -5.6649 26 1 14.6750 0.8823 -4.6875 27 1 12.9006 1.9693 -5.9328 28 6 10.1046 4.6554 0.0031 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.6887 1.8463 0.8901 33 1 1.6887 1.8464 -0.8899 34 1 3.8594 3.1724 0.0017 35 1 6.0587 1.6405 -0.8889 36 1 6.0586 1.6396 0.8911 37 1 6.0377 4.1195 0.8916 38 1 6.0378 4.1197 -0.8885 39 1 7.1569 6.0564 -0.3746 40 1 8.2418 6.4015 1.0065 41 1 10.2267 8.5681 -1.0616 42 1 8.5683 8.7083 -0.4304 43 1 9.8565 8.0315 0.5947 44 1 11.8076 7.4764 -1.0782 45 1 11.4103 6.9791 0.5841 46 1 12.5062 5.9843 -0.4046 47 1 10.9149 6.1442 -3.0226 48 1 9.8493 4.7504 -2.7222 49 1 12.3377 4.2523 -1.4825 50 1 13.7377 3.1833 -1.4855 51 1 10.5389 3.7294 -0.3736 52 1 10.4747 4.8674 1.0062 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181657712.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:20:55 Heat of formation + Delta-G solvation = -99.214106 kcal Electronic energy + Delta-G solvation = -30283.672037 eV Core-core repulsion = 26090.981621 eV Total energy + Delta-G solvation = -4192.690416 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.46842 -39.99224 -38.49564 -37.78761 -35.35250 -34.97849 -33.44519 -31.73207 -31.48551 -29.54474 -29.10130 -27.18007 -26.38687 -25.78039 -25.46204 -23.50259 -23.08128 -21.33334 -21.07570 -19.28769 -18.43132 -17.68840 -17.49235 -17.18531 -16.78716 -16.72891 -16.23690 -15.79307 -15.41824 -15.17448 -15.08720 -14.69732 -14.43614 -14.09143 -14.04993 -13.61147 -13.47493 -13.34538 -13.16359 -13.00167 -12.81530 -12.61409 -12.24818 -12.10381 -11.90992 -11.88671 -11.75301 -11.65505 -11.58151 -11.31521 -10.72433 -10.71645 -10.52204 -10.26460 -10.24137 -10.16403 -10.13310 -9.93675 -9.77086 -9.38762 -9.10781 -8.82832 -8.64577 -6.94035 -6.04344 -3.03591 2.32691 2.36212 2.65666 3.00613 3.55808 3.61787 3.66442 3.75760 4.25925 4.42043 4.48420 4.51115 4.60998 4.65084 4.67277 4.75182 4.81703 4.85450 4.86002 4.90838 5.07196 5.20170 5.23036 5.28188 5.30965 5.39296 5.49110 5.61406 5.64857 5.69985 5.74911 5.78700 5.85216 5.90720 5.94969 6.04532 6.07634 6.12397 6.23234 6.32642 6.45227 6.51305 6.58601 6.68811 6.78479 7.12974 7.60632 7.86294 7.92447 8.20277 8.81711 9.28569 10.14727 10.29278 11.44192 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.010351 B = 0.002348 C = 0.002004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2704.336912 B =11923.618485 C =13967.297828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.366 6.366 3 C 0.045 3.955 4 C 0.510 3.490 5 O -0.511 6.511 6 N -0.732 5.732 7 C 0.134 3.866 8 C -0.146 4.146 9 C 0.534 3.466 10 O -0.526 6.526 11 N -0.620 5.620 12 C 0.105 3.895 13 C -0.098 4.098 14 H 0.082 0.918 15 C -0.141 4.141 16 C -0.078 4.078 17 C -0.133 4.133 18 C 0.175 3.825 19 N -0.739 5.739 20 C -0.330 4.330 21 H 0.063 0.937 22 C -0.045 4.045 23 N -0.943 5.943 24 Si 1.082 2.918 25 H -0.296 1.296 26 H -0.288 1.288 27 H -0.296 1.296 28 C 0.112 3.888 29 H 0.092 0.908 30 H 0.044 0.956 31 H 0.044 0.956 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.399 0.601 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.098 0.902 38 H 0.099 0.901 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.064 0.936 42 H 0.051 0.949 43 H 0.060 0.940 44 H 0.060 0.940 45 H 0.052 0.948 46 H 0.063 0.937 47 H 0.020 0.980 48 H 0.017 0.983 49 H 0.367 0.633 50 H 0.254 0.746 51 H 0.097 0.903 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.500 11.523 8.569 30.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.284 6.284 3 C -0.036 4.036 4 C 0.295 3.705 5 O -0.384 6.384 6 N -0.386 5.386 7 C 0.011 3.989 8 C -0.186 4.186 9 C 0.322 3.678 10 O -0.402 6.402 11 N -0.354 5.354 12 C -0.018 4.018 13 C -0.118 4.118 14 H 0.101 0.899 15 C -0.199 4.199 16 C -0.079 4.079 17 C -0.190 4.190 18 C 0.048 3.952 19 N -0.386 5.386 20 C -0.461 4.461 21 H 0.081 0.919 22 C -0.243 4.243 23 N -0.589 5.589 24 Si 0.913 3.087 25 H -0.224 1.224 26 H -0.214 1.214 27 H -0.222 1.222 28 C -0.010 4.010 29 H 0.110 0.890 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.233 0.767 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.116 0.884 38 H 0.117 0.883 39 H 0.093 0.907 40 H 0.090 0.910 41 H 0.083 0.917 42 H 0.070 0.930 43 H 0.079 0.921 44 H 0.079 0.921 45 H 0.071 0.929 46 H 0.082 0.918 47 H 0.038 0.962 48 H 0.035 0.965 49 H 0.201 0.799 50 H 0.065 0.935 51 H 0.115 0.885 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -24.762 8.810 7.713 27.391 hybrid contribution -1.538 1.914 0.773 2.575 sum -26.300 10.724 8.486 29.643 Atomic orbital electron populations 1.22854 0.80246 1.03479 1.00105 1.88042 1.19874 1.25082 1.95407 1.22226 0.91535 0.87170 1.02625 1.20246 0.88661 0.84604 0.77027 1.90792 1.74502 1.26398 1.46739 1.45842 1.07225 1.08678 1.76880 1.21074 0.77540 0.95651 1.04627 1.21748 0.93104 0.98969 1.04815 1.19833 0.88249 0.83099 0.76666 1.90818 1.74667 1.25580 1.49105 1.48892 1.08003 1.05416 1.73090 1.22506 0.98438 0.81122 0.99726 1.22136 0.95216 0.94889 0.99530 0.89948 1.21891 1.01360 0.95106 1.01529 1.21734 0.94588 0.94322 0.97273 1.21855 0.97456 0.99947 0.99754 1.20572 0.90530 0.92704 0.91416 1.42382 1.32455 1.55559 1.08179 1.20015 1.12656 1.25470 0.87948 0.91922 1.25745 0.95378 0.98852 1.04282 1.70854 1.42689 1.46666 0.98655 0.83201 0.75304 0.76475 0.73676 1.22398 1.21355 1.22236 1.22530 0.79103 1.00765 0.98592 0.88980 0.93777 0.93742 0.90200 0.90135 0.76716 0.90061 0.90223 0.88413 0.88260 0.90676 0.90988 0.91694 0.92987 0.92140 0.92080 0.92908 0.91828 0.96184 0.96524 0.79887 0.93481 0.88455 0.91585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.28 16 2 O -0.37 -3.76 10.24 -55.14 -0.56 -4.33 16 3 C 0.04 0.32 6.42 36.00 0.23 0.55 16 4 C 0.51 5.66 7.91 -10.99 -0.09 5.58 16 5 O -0.51 -8.69 16.50 -14.35 -0.24 -8.92 16 6 N -0.73 -6.00 5.56 -60.29 -0.33 -6.34 16 7 C 0.13 1.52 4.96 -4.04 -0.02 1.50 16 8 C -0.15 -1.33 4.79 -27.88 -0.13 -1.46 16 9 C 0.53 7.92 7.91 -10.98 -0.09 7.84 16 10 O -0.53 -10.68 16.25 5.55 0.09 -10.59 16 11 N -0.62 -8.51 3.32 -169.33 -0.56 -9.07 16 12 C 0.11 0.99 6.46 -2.41 -0.02 0.97 16 13 C -0.10 -1.06 3.31 -89.22 -0.30 -1.36 16 14 H 0.08 0.93 7.71 -51.93 -0.40 0.52 16 15 C -0.14 -1.21 7.95 37.16 0.30 -0.91 16 16 C -0.08 -1.17 0.73 -153.12 -0.11 -1.28 16 17 C -0.13 -1.87 7.11 37.16 0.26 -1.61 16 18 C 0.18 3.54 4.96 -4.04 -0.02 3.52 16 19 N -0.74 -18.80 4.76 -59.91 -0.29 -19.08 16 20 C -0.33 -9.60 9.99 -15.06 -0.15 -9.75 16 21 H 0.06 1.81 7.83 -52.49 -0.41 1.40 16 22 C -0.05 -1.35 5.50 -17.43 -0.10 -1.45 16 23 N -0.94 -29.96 13.70 55.49 0.76 -29.20 16 24 Si 1.08 27.05 29.92 -169.99 -5.09 21.97 16 25 H -0.30 -7.11 7.11 56.52 0.40 -6.71 16 26 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 27 H -0.30 -7.04 7.11 56.52 0.40 -6.64 16 28 C 0.11 1.82 5.87 -2.43 -0.01 1.81 16 29 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 32 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.40 1.55 8.47 -40.82 -0.35 1.20 16 35 H 0.08 1.16 8.10 -51.93 -0.42 0.74 16 36 H 0.08 1.07 8.10 -51.93 -0.42 0.65 16 37 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.10 0.69 7.95 -51.93 -0.41 0.28 16 39 H 0.07 0.51 7.30 -51.93 -0.38 0.13 16 40 H 0.07 0.56 7.84 -51.93 -0.41 0.16 16 41 H 0.06 0.60 6.85 -51.93 -0.36 0.24 16 42 H 0.05 0.35 8.14 -51.92 -0.42 -0.07 16 43 H 0.06 0.49 6.72 -51.93 -0.35 0.14 16 44 H 0.06 0.83 6.90 -51.93 -0.36 0.47 16 45 H 0.05 0.60 6.70 -51.93 -0.35 0.26 16 46 H 0.06 1.08 6.96 -51.93 -0.36 0.72 16 47 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 49 H 0.37 9.49 4.81 -40.82 -0.20 9.29 16 50 H 0.25 7.93 6.77 -40.82 -0.28 7.65 16 51 H 0.10 2.06 6.72 -51.93 -0.35 1.72 16 52 H 0.07 0.97 7.85 -51.93 -0.41 0.56 16 LS Contribution 413.29 15.07 6.23 6.23 Total: -1.00 -40.85 413.29 -7.92 -48.77 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: -8.80 Total: 5.33 kcal Atomic # 6 Polarization: 4.37 SS G_CDS: 0.87 Total: 5.24 kcal Atomic # 7 Polarization: -63.27 SS G_CDS: -0.42 Total: -63.69 kcal Atomic # 8 Polarization: -23.13 SS G_CDS: -0.71 Total: -23.84 kcal Atomic # 14 Polarization: 27.05 SS G_CDS: -5.09 Total: 21.97 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -40.85 -7.92 -48.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181657712.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.444 kcal (2) G-P(sol) polarization free energy of solvation -40.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds