Wall clock time and date at job start Wed Apr 1 2020 01:20:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 114.00414 * 2 1 4 4 C 1.50697 * 109.47323 * 179.97438 * 3 2 1 5 5 O 1.21282 * 120.00243 * 0.02562 * 4 3 2 6 6 N 1.34777 * 119.99810 * 180.02562 * 4 3 2 7 7 C 1.46506 * 119.99798 * 180.02562 * 6 4 3 8 8 C 1.52995 * 109.46907 * 179.97438 * 7 6 4 9 9 C 1.50703 * 109.47238 * 179.97438 * 8 7 6 10 10 O 1.21287 * 119.99513 * 0.02562 * 9 8 7 11 11 N 1.34777 * 120.00491 * 180.02562 * 9 8 7 12 12 C 1.48147 * 127.83544 * 359.97017 * 11 9 8 13 13 C 1.54379 * 104.61690 * 219.60855 * 12 11 9 14 14 H 1.09003 * 110.34301 * 95.01151 * 13 12 11 15 15 C 1.52999 * 110.34396 * 217.26393 * 13 12 11 16 16 C 1.54289 * 104.96389 * 336.13681 * 13 12 11 17 17 C 1.53002 * 110.42972 * 241.08385 * 16 13 12 18 18 C 1.52994 * 110.34121 * 118.87129 * 16 13 12 19 19 N 1.46510 * 109.46884 * 183.01219 * 18 16 13 20 20 C 1.36935 * 119.99776 * 180.02562 * 19 18 16 21 21 H 1.07997 * 120.00259 * 359.97438 * 20 19 18 22 22 C 1.38813 * 119.99472 * 179.97438 * 20 19 18 23 23 N 1.31618 * 120.00240 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99684 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.46845 * 90.00337 * 24 22 20 26 26 H 1.48503 * 109.47399 * 209.99827 * 24 22 20 27 27 H 1.48498 * 109.47295 * 330.00433 * 24 22 20 28 28 C 1.48146 * 127.83842 * 180.02562 * 11 9 8 29 29 H 1.08995 * 109.47092 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46911 * 300.00040 * 1 2 3 31 31 H 1.09005 * 109.46975 * 59.99453 * 1 2 3 32 32 H 1.09007 * 109.46709 * 60.00004 * 3 2 1 33 33 H 1.09002 * 109.47225 * 300.00634 * 3 2 1 34 34 H 0.96999 * 120.00297 * 0.02562 * 6 4 3 35 35 H 1.08997 * 109.47283 * 60.00008 * 7 6 4 36 36 H 1.09005 * 109.47143 * 299.99772 * 7 6 4 37 37 H 1.09007 * 109.47026 * 60.00488 * 8 7 6 38 38 H 1.08997 * 109.47831 * 299.99900 * 8 7 6 39 39 H 1.09002 * 110.40662 * 338.39606 * 12 11 9 40 40 H 1.09005 * 110.40245 * 100.70778 * 12 11 9 41 41 H 1.09000 * 109.47515 * 175.53790 * 15 13 12 42 42 H 1.09007 * 109.47444 * 295.53906 * 15 13 12 43 43 H 1.09001 * 109.47102 * 55.53583 * 15 13 12 44 44 H 1.08999 * 109.47343 * 298.46150 * 17 16 13 45 45 H 1.08996 * 109.47110 * 58.46619 * 17 16 13 46 46 H 1.08996 * 109.47016 * 178.46498 * 17 16 13 47 47 H 1.08995 * 109.47727 * 63.01231 * 18 16 13 48 48 H 1.09001 * 109.47087 * 303.00708 * 18 16 13 49 49 H 0.96998 * 119.99423 * 359.97438 * 19 18 16 50 50 H 0.97000 * 119.99789 * 359.97438 * 23 22 20 51 51 H 1.08996 * 110.40866 * 21.60582 * 28 11 9 52 52 H 1.08998 * 110.50427 * 259.22530 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 0.0006 5 8 4.0342 0.0914 0.0006 6 7 4.2765 2.2967 0.0013 7 6 5.7370 2.1810 0.0013 8 6 6.3593 3.5787 0.0014 9 6 7.8616 3.4597 0.0021 10 8 8.3832 2.3647 0.0020 11 7 8.6256 4.5700 0.0029 12 6 8.1769 5.9819 0.0025 13 6 9.1566 6.7018 -0.9489 14 1 8.7364 6.7590 -1.9531 15 6 9.4749 8.1031 -0.4238 16 6 10.4277 5.8272 -0.9483 17 6 11.6240 6.6241 -0.4241 18 6 10.7142 5.3045 -2.3573 19 7 11.8815 4.4197 -2.3219 20 6 12.3288 3.8301 -3.4740 21 1 11.8210 4.0169 -4.4087 22 6 13.4351 2.9923 -3.4405 23 7 14.0543 2.7650 -2.3015 24 14 14.0450 2.1873 -5.0120 25 1 15.0444 3.0707 -5.6649 26 1 14.6750 0.8823 -4.6875 27 1 12.9006 1.9693 -5.9328 28 6 10.1046 4.6554 0.0031 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.6887 1.8463 0.8901 33 1 1.6887 1.8464 -0.8899 34 1 3.8594 3.1724 0.0017 35 1 6.0587 1.6405 -0.8889 36 1 6.0586 1.6396 0.8911 37 1 6.0377 4.1195 0.8916 38 1 6.0378 4.1197 -0.8885 39 1 7.1569 6.0564 -0.3746 40 1 8.2418 6.4015 1.0065 41 1 10.2267 8.5681 -1.0616 42 1 8.5683 8.7083 -0.4304 43 1 9.8565 8.0315 0.5947 44 1 11.8076 7.4764 -1.0782 45 1 11.4103 6.9791 0.5841 46 1 12.5062 5.9843 -0.4046 47 1 10.9149 6.1442 -3.0226 48 1 9.8493 4.7504 -2.7222 49 1 12.3377 4.2523 -1.4825 50 1 13.7377 3.1833 -1.4855 51 1 10.5389 3.7294 -0.3736 52 1 10.4747 4.8674 1.0062 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181657712.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:20:54 Heat of formation + Delta-G solvation = -132.228762 kcal Electronic energy + Delta-G solvation = -30285.103660 eV Core-core repulsion = 26090.981621 eV Total energy + Delta-G solvation = -4194.122039 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.57274 -40.87476 -39.67627 -38.44824 -36.80364 -36.31496 -34.82378 -33.14959 -32.50203 -31.07730 -29.76993 -28.19035 -27.40163 -26.69988 -26.62857 -25.31852 -24.21379 -22.54815 -21.93476 -20.36554 -19.74844 -19.28093 -18.40049 -18.31812 -17.62942 -17.48493 -17.17319 -16.93430 -16.66411 -16.18725 -16.07046 -15.86342 -15.45502 -15.40512 -15.35625 -15.26823 -14.61419 -14.55287 -14.40759 -14.06660 -13.88423 -13.29902 -13.17190 -13.13829 -12.96803 -12.88157 -12.84454 -12.60467 -12.54115 -12.46896 -12.35277 -12.30828 -11.96846 -11.67671 -11.62571 -11.30681 -11.14493 -11.11598 -10.98219 -10.90132 -10.76309 -10.26728 -9.78557 -9.13671 -8.45250 -5.37351 1.50100 1.51207 1.53039 1.58374 1.63589 1.77274 2.08634 2.66240 3.10749 3.33242 3.36651 3.53431 3.55301 3.68663 3.75766 3.86656 3.97318 4.01098 4.18133 4.20327 4.27399 4.29342 4.33896 4.38762 4.50433 4.55751 4.58969 4.62733 4.66295 4.73005 4.77279 4.78434 4.85543 4.88454 4.89201 4.93144 5.00062 5.09309 5.15861 5.25216 5.27004 5.36888 5.41096 5.52006 5.62970 6.04791 6.44124 6.49642 6.56458 7.05472 7.08655 7.20143 7.96586 8.06777 9.06701 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.010351 B = 0.002348 C = 0.002004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2704.336912 B =11923.618485 C =13967.297828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.415 6.415 3 C 0.049 3.951 4 C 0.501 3.499 5 O -0.585 6.585 6 N -0.705 5.705 7 C 0.140 3.860 8 C -0.123 4.123 9 C 0.520 3.480 10 O -0.601 6.601 11 N -0.620 5.620 12 C 0.105 3.895 13 C -0.091 4.091 14 H 0.081 0.919 15 C -0.136 4.136 16 C -0.070 4.070 17 C -0.126 4.126 18 C 0.175 3.825 19 N -0.751 5.751 20 C -0.334 4.334 21 H 0.062 0.938 22 C -0.107 4.107 23 N -0.973 5.973 24 Si 1.130 2.870 25 H -0.277 1.277 26 H -0.294 1.294 27 H -0.277 1.277 28 C 0.111 3.889 29 H 0.089 0.911 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.119 0.881 33 H 0.116 0.884 34 H 0.426 0.574 35 H 0.040 0.960 36 H 0.049 0.951 37 H 0.146 0.854 38 H 0.135 0.865 39 H 0.117 0.883 40 H 0.102 0.898 41 H 0.055 0.945 42 H 0.082 0.918 43 H 0.069 0.931 44 H 0.068 0.932 45 H 0.088 0.912 46 H 0.024 0.976 47 H 0.023 0.977 48 H -0.003 1.003 49 H 0.361 0.639 50 H 0.242 0.758 51 H 0.033 0.967 52 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.138 15.764 8.923 35.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.334 6.334 3 C -0.030 4.030 4 C 0.288 3.712 5 O -0.464 6.464 6 N -0.361 5.361 7 C 0.015 3.985 8 C -0.163 4.163 9 C 0.310 3.690 10 O -0.482 6.482 11 N -0.352 5.352 12 C -0.016 4.016 13 C -0.111 4.111 14 H 0.099 0.901 15 C -0.194 4.194 16 C -0.072 4.072 17 C -0.183 4.183 18 C 0.048 3.952 19 N -0.396 5.396 20 C -0.466 4.466 21 H 0.080 0.920 22 C -0.298 4.298 23 N -0.621 5.621 24 Si 0.954 3.046 25 H -0.203 1.203 26 H -0.220 1.220 27 H -0.203 1.203 28 C -0.012 4.012 29 H 0.108 0.892 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.136 0.864 33 H 0.133 0.867 34 H 0.265 0.735 35 H 0.058 0.942 36 H 0.068 0.932 37 H 0.164 0.836 38 H 0.153 0.847 39 H 0.135 0.865 40 H 0.120 0.880 41 H 0.074 0.926 42 H 0.100 0.900 43 H 0.088 0.912 44 H 0.087 0.913 45 H 0.106 0.894 46 H 0.043 0.957 47 H 0.040 0.960 48 H 0.015 0.985 49 H 0.194 0.806 50 H 0.052 0.948 51 H 0.052 0.948 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -28.482 13.210 8.066 32.416 hybrid contribution -0.452 0.638 0.661 1.024 sum -28.934 13.848 8.727 33.243 Atomic orbital electron populations 1.23033 0.78094 1.04052 1.01872 1.87982 1.22341 1.27193 1.95853 1.22401 0.87868 0.86733 1.05970 1.21231 0.90764 0.83906 0.75310 1.90763 1.76073 1.29263 1.50252 1.45542 1.05621 1.09628 1.75299 1.20744 0.79586 0.96835 1.01377 1.21700 0.88023 0.97851 1.08694 1.20974 0.90683 0.82201 0.75154 1.90792 1.76381 1.28540 1.52453 1.49045 1.06727 1.07466 1.71970 1.22896 0.99932 0.77564 1.01240 1.22151 0.92737 0.95700 1.00472 0.90061 1.21867 1.02674 0.93292 1.01536 1.21640 0.97515 0.94722 0.93289 1.21823 0.95392 0.99124 1.01999 1.20727 0.87716 0.91396 0.95319 1.42589 1.33824 1.56211 1.06973 1.20384 1.12239 1.24892 0.89048 0.92020 1.27241 0.96211 0.99918 1.06429 1.70963 1.43876 1.48207 0.99045 0.82606 0.75764 0.75455 0.70750 1.20329 1.22044 1.20301 1.22338 0.81283 0.98295 0.99300 0.89236 0.91824 0.92011 0.86384 0.86670 0.73463 0.94168 0.93205 0.83576 0.84666 0.86450 0.87954 0.92608 0.89956 0.91238 0.91323 0.89376 0.95728 0.95956 0.98484 0.80586 0.94776 0.94783 0.90022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 113.37 1.25 1.48 16 2 O -0.41 -8.11 10.24 -129.94 -1.33 -9.44 16 3 C 0.05 0.58 6.42 71.24 0.46 1.03 16 4 C 0.50 10.84 7.91 87.66 0.69 11.53 16 5 O -0.58 -21.14 16.50 16.00 0.26 -20.88 16 6 N -0.70 -10.17 5.56 -463.05 -2.57 -12.74 16 7 C 0.14 3.19 4.96 86.38 0.43 3.62 16 8 C -0.12 -1.87 4.79 29.85 0.14 -1.73 16 9 C 0.52 15.40 7.91 87.66 0.69 16.09 16 10 O -0.60 -26.45 16.25 -3.05 -0.05 -26.50 16 11 N -0.62 -16.17 3.32 -808.02 -2.68 -18.85 16 12 C 0.10 1.43 6.46 86.53 0.56 1.99 16 13 C -0.09 -1.64 3.31 -9.89 -0.03 -1.68 16 14 H 0.08 1.53 7.71 -2.39 -0.02 1.51 16 15 C -0.14 -1.64 7.95 71.98 0.57 -1.07 16 16 C -0.07 -2.08 0.73 -51.29 -0.04 -2.12 16 17 C -0.13 -3.46 7.11 71.98 0.51 -2.95 16 18 C 0.17 7.29 4.96 86.38 0.43 7.71 16 19 N -0.75 -40.30 4.76 -343.45 -1.63 -41.94 16 20 C -0.33 -20.18 9.99 84.03 0.84 -19.34 16 21 H 0.06 3.66 7.83 -2.91 -0.02 3.63 16 22 C -0.11 -6.63 5.50 84.86 0.47 -6.17 16 23 N -0.97 -64.61 13.70 21.65 0.30 -64.31 16 24 Si 1.13 55.69 29.92 68.60 2.05 57.74 16 25 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 26 H -0.29 -14.72 7.11 99.48 0.71 -14.01 16 27 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 28 C 0.11 3.71 5.87 86.52 0.51 4.22 16 29 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.06 0.32 8.14 -2.39 -0.02 0.30 16 31 H 0.06 0.34 8.14 -2.38 -0.02 0.32 16 32 H 0.12 0.48 8.14 -2.38 -0.02 0.46 16 33 H 0.12 0.54 8.14 -2.39 -0.02 0.53 16 34 H 0.43 1.35 8.47 -92.71 -0.79 0.57 16 35 H 0.04 1.25 8.10 -2.39 -0.02 1.23 16 36 H 0.05 1.44 8.10 -2.38 -0.02 1.42 16 37 H 0.15 0.91 8.14 -2.38 -0.02 0.89 16 38 H 0.14 1.18 7.95 -2.39 -0.02 1.16 16 39 H 0.12 0.71 7.30 -2.39 -0.02 0.70 16 40 H 0.10 0.91 7.84 -2.38 -0.02 0.89 16 41 H 0.05 0.81 6.85 -2.39 -0.02 0.79 16 42 H 0.08 0.57 8.14 -2.38 -0.02 0.55 16 43 H 0.07 0.74 6.72 -2.39 -0.02 0.73 16 44 H 0.07 1.77 6.90 -2.39 -0.02 1.75 16 45 H 0.09 1.79 6.70 -2.39 -0.02 1.77 16 46 H 0.02 0.85 6.96 -2.39 -0.02 0.83 16 47 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 48 H 0.00 -0.13 8.14 -2.39 -0.02 -0.14 16 49 H 0.36 20.10 4.81 -92.71 -0.45 19.66 16 50 H 0.24 16.08 6.77 -92.71 -0.63 15.45 16 51 H 0.03 1.57 6.72 -2.39 -0.02 1.55 16 52 H 0.08 2.41 7.85 -2.39 -0.02 2.39 16 Total: -1.00 -103.30 413.29 1.66 -101.64 By element: Atomic # 1 Polarization: 22.80 SS G_CDS: -0.16 Total: 22.64 kcal Atomic # 6 Polarization: 5.16 SS G_CDS: 7.48 Total: 12.64 kcal Atomic # 7 Polarization: -131.25 SS G_CDS: -6.59 Total: -137.84 kcal Atomic # 8 Polarization: -55.70 SS G_CDS: -1.12 Total: -56.81 kcal Atomic # 14 Polarization: 55.69 SS G_CDS: 2.05 Total: 57.74 kcal Total: -103.30 1.66 -101.64 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181657712.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.591 kcal (2) G-P(sol) polarization free energy of solvation -103.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -101.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds