Wall clock time and date at job start Wed Apr 1 2020 01:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42901 * 113.99822 * 2 1 4 4 C 1.53006 * 109.46722 * 180.02562 * 3 2 1 5 5 C 1.50703 * 109.46854 * 180.02562 * 4 3 2 6 6 O 1.21287 * 120.00037 * 359.97438 * 5 4 3 7 7 N 1.34772 * 119.99912 * 179.97438 * 5 4 3 8 8 C 1.46930 * 120.63078 * 0.02636 * 7 5 4 9 9 C 1.53191 * 108.76206 * 233.59110 * 8 7 5 10 10 C 1.53039 * 109.31818 * 305.34456 * 9 8 7 11 11 H 1.09009 * 109.45565 * 301.37569 * 10 9 8 12 12 C 1.52993 * 109.46556 * 181.39984 * 10 9 8 13 13 N 1.46905 * 109.47039 * 64.97144 * 12 10 9 14 14 C 1.46901 * 110.99870 * 180.02562 * 13 12 10 15 15 C 1.50697 * 109.46943 * 180.02562 * 14 13 12 16 16 O 1.21292 * 120.00024 * 359.97438 * 15 14 13 17 17 N 1.34776 * 119.99767 * 180.02562 * 15 14 13 18 18 C 1.37097 * 119.99759 * 179.97438 * 17 15 14 19 19 H 1.08000 * 120.00171 * 359.97438 * 18 17 15 20 20 C 1.38951 * 120.00074 * 179.97438 * 18 17 15 21 21 N 1.31416 * 119.99768 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00310 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47134 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47103 * 120.00017 * 22 20 18 25 25 H 1.48494 * 109.47266 * 240.00436 * 22 20 18 26 26 C 1.53040 * 109.52530 * 61.38009 * 10 9 8 27 27 H 1.09010 * 109.49687 * 178.67878 * 26 10 9 28 28 C 1.53007 * 109.49375 * 58.58746 * 26 10 9 29 29 C 1.46928 * 120.62992 * 179.97438 * 7 5 4 30 30 H 1.09000 * 109.47481 * 59.99672 * 1 2 3 31 31 H 1.09000 * 109.47202 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47192 * 299.99660 * 1 2 3 33 33 H 1.08997 * 109.47151 * 60.00287 * 3 2 1 34 34 H 1.09003 * 109.47360 * 300.00038 * 3 2 1 35 35 H 1.08997 * 109.47254 * 60.00128 * 4 3 2 36 36 H 1.09003 * 109.47053 * 300.00005 * 4 3 2 37 37 H 1.09002 * 109.58429 * 353.36880 * 8 7 5 38 38 H 1.08994 * 109.58793 * 113.65314 * 8 7 5 39 39 H 1.09001 * 109.48886 * 185.39439 * 9 8 7 40 40 H 1.09005 * 109.50997 * 65.30503 * 9 8 7 41 41 H 1.09001 * 109.47393 * 304.97425 * 12 10 9 42 42 H 1.08998 * 109.47408 * 184.97071 * 12 10 9 43 43 H 1.00901 * 110.99869 * 56.04956 * 13 12 10 44 44 H 1.09004 * 109.47031 * 299.99620 * 14 13 12 45 45 H 1.08995 * 109.47111 * 59.99900 * 14 13 12 46 46 H 0.96997 * 120.00713 * 359.97438 * 17 15 14 47 47 H 0.96999 * 119.99907 * 179.97438 * 21 20 18 48 48 H 1.08997 * 109.47414 * 59.99729 * 28 26 10 49 49 H 1.08997 * 109.46630 * 179.97438 * 28 26 10 50 50 H 1.08998 * 109.46838 * 299.99519 * 28 26 10 51 51 H 1.08997 * 109.58456 * 6.63425 * 29 7 5 52 52 H 1.09000 * 109.70722 * 246.27173 * 29 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1484 2.5614 0.0000 6 8 3.4355 3.5426 0.0004 7 7 5.4888 2.7022 0.0001 8 6 6.3654 1.5231 -0.0010 9 6 7.3503 1.6403 1.1665 10 6 8.0927 2.9752 1.0705 11 1 8.6178 3.0309 0.1169 12 6 9.1022 3.0806 2.2153 13 7 10.1350 2.0483 2.0539 14 6 11.1237 2.1189 3.1381 15 6 12.1649 1.0479 2.9389 16 8 12.0904 0.2991 1.9876 17 7 13.1784 0.9214 3.8183 18 6 14.1253 -0.0533 3.6373 19 1 14.0590 -0.7200 2.7903 20 6 15.1705 -0.1834 4.5436 21 7 15.2509 0.6276 5.5746 22 14 16.4604 -1.5119 4.2975 23 1 16.1448 -2.2871 3.0709 24 1 17.7979 -0.8827 4.1543 25 1 16.4643 -2.4216 5.4711 26 6 7.0893 4.1266 1.1679 27 1 7.6209 5.0772 1.1231 28 6 6.3269 4.0290 2.4910 29 6 6.1011 4.0378 0.0002 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.6886 1.8464 0.8900 34 1 1.6886 1.8464 -0.8900 35 1 3.8567 0.6439 -0.8908 36 1 3.8575 0.6435 0.8891 37 1 5.7648 0.6212 0.1168 38 1 6.9141 1.4765 -0.9416 39 1 8.0677 0.8210 1.1207 40 1 6.8048 1.5944 2.1091 41 1 8.5896 2.9361 3.1663 42 1 9.5679 4.0659 2.1995 43 1 10.5812 2.1211 1.1519 44 1 11.6035 3.0977 3.1291 45 1 10.6248 1.9676 4.0953 46 1 13.2378 1.5200 4.5792 47 1 15.9803 0.5366 6.2075 48 1 7.0306 4.0894 3.3211 49 1 5.6127 4.8495 2.5601 50 1 5.7946 3.0788 2.5342 51 1 5.3262 4.7950 0.1187 52 1 6.6297 4.1999 -0.9392 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001183678208.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:21:08 Heat of formation + Delta-G solvation = -127.163595 kcal Electronic energy + Delta-G solvation = -29882.076256 eV Core-core repulsion = 25688.173859 eV Total energy + Delta-G solvation = -4193.902397 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.78084 -38.83927 -38.22280 -37.86369 -35.57141 -34.04843 -33.61113 -32.20061 -31.56849 -31.20126 -28.35307 -27.58789 -26.66432 -25.80179 -24.15195 -23.62311 -23.26136 -21.94859 -20.07417 -19.31359 -18.55492 -17.92581 -17.73983 -16.71130 -16.47701 -16.13618 -15.86752 -15.69432 -15.47094 -15.21398 -14.92316 -14.69599 -14.53655 -14.21765 -14.01969 -13.72997 -13.68788 -13.36996 -13.19175 -13.00358 -12.73075 -12.55588 -12.33811 -12.00856 -11.92174 -11.81767 -11.71256 -11.57404 -11.50912 -11.50261 -11.22054 -11.05542 -10.79623 -10.54477 -10.50120 -10.35253 -10.23175 -10.06076 -10.03060 -9.52910 -8.88202 -8.46533 -8.05518 -7.96579 -6.42807 -3.83630 2.32311 2.57610 3.15524 3.26181 3.33312 3.44240 3.90107 4.06767 4.25947 4.29205 4.44776 4.53482 4.63944 4.68683 4.78063 4.82856 4.94888 4.96947 4.98375 5.05833 5.12493 5.19100 5.20794 5.25167 5.28859 5.37910 5.40361 5.42612 5.47230 5.48157 5.53548 5.58696 5.69198 5.75220 5.82066 5.87380 5.93043 5.97683 5.99507 6.13237 6.25008 6.29076 6.40924 6.73003 7.09880 7.21199 7.54387 7.65775 7.85765 8.05661 8.60218 9.17009 9.53580 10.04803 10.74997 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.018622 B = 0.001744 C = 0.001649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.236898 B =16050.865354 C =16980.753299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.395 6.395 3 C 0.077 3.923 4 C -0.141 4.141 5 C 0.521 3.479 6 O -0.549 6.549 7 N -0.606 5.606 8 C 0.102 3.898 9 C -0.126 4.126 10 C -0.078 4.078 11 H 0.072 0.928 12 C 0.063 3.937 13 N -0.667 5.667 14 C 0.051 3.949 15 C 0.441 3.559 16 O -0.584 6.584 17 N -0.564 5.564 18 C -0.299 4.299 19 H 0.104 0.896 20 C 0.022 3.978 21 N -0.902 5.902 22 Si 0.929 3.071 23 H -0.268 1.268 24 H -0.282 1.282 25 H -0.281 1.281 26 C -0.101 4.101 27 H 0.081 0.919 28 C -0.146 4.146 29 C 0.117 3.883 30 H 0.042 0.958 31 H 0.087 0.913 32 H 0.042 0.958 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.102 0.898 36 H 0.104 0.896 37 H 0.086 0.914 38 H 0.072 0.928 39 H 0.096 0.904 40 H 0.068 0.932 41 H 0.073 0.927 42 H 0.026 0.974 43 H 0.348 0.652 44 H 0.042 0.958 45 H 0.085 0.915 46 H 0.392 0.608 47 H 0.271 0.729 48 H 0.059 0.941 49 H 0.051 0.949 50 H 0.058 0.942 51 H 0.091 0.909 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.991 6.384 -8.928 26.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.314 6.314 3 C 0.000 4.000 4 C -0.181 4.181 5 C 0.309 3.691 6 O -0.427 6.427 7 N -0.339 5.339 8 C -0.021 4.021 9 C -0.164 4.164 10 C -0.097 4.097 11 H 0.090 0.910 12 C -0.067 4.067 13 N -0.299 5.299 14 C -0.082 4.082 15 C 0.227 3.773 16 O -0.468 6.468 17 N -0.201 5.201 18 C -0.429 4.429 19 H 0.121 0.879 20 C -0.180 4.180 21 N -0.543 5.543 22 Si 0.757 3.243 23 H -0.192 1.192 24 H -0.208 1.208 25 H -0.207 1.207 26 C -0.121 4.121 27 H 0.099 0.901 28 C -0.203 4.203 29 C -0.005 4.005 30 H 0.060 0.940 31 H 0.105 0.895 32 H 0.061 0.939 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.121 0.879 36 H 0.122 0.878 37 H 0.104 0.896 38 H 0.091 0.909 39 H 0.115 0.885 40 H 0.087 0.913 41 H 0.091 0.909 42 H 0.044 0.956 43 H 0.167 0.833 44 H 0.060 0.940 45 H 0.103 0.897 46 H 0.225 0.775 47 H 0.081 0.919 48 H 0.078 0.922 49 H 0.070 0.930 50 H 0.077 0.923 51 H 0.110 0.890 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -24.523 5.740 -9.113 26.784 hybrid contribution 1.213 0.767 0.307 1.468 sum -23.310 6.507 -8.806 25.753 Atomic orbital electron populations 1.22738 0.80555 1.02814 1.00178 1.87813 1.20096 1.27958 1.95560 1.22161 0.91941 0.84240 1.01672 1.21515 0.95360 0.95420 1.05763 1.20359 0.81957 0.91001 0.75747 1.90694 1.60553 1.40861 1.50565 1.48090 1.05243 1.07808 1.72734 1.21937 0.92884 0.87338 0.99910 1.21945 0.97987 0.98713 0.97715 1.21115 0.95048 0.94507 0.99028 0.90960 1.22052 0.93075 0.92660 0.98876 1.60071 1.15032 1.48963 1.05858 1.21657 0.93247 0.97277 0.95985 1.19820 0.84081 0.87866 0.85572 1.90517 1.77010 1.46859 1.32387 1.41878 1.22535 1.31406 1.24290 1.19757 1.02391 1.10286 1.10431 0.87859 1.25266 0.98774 0.98511 0.95424 1.69622 1.33172 1.38007 1.13516 0.85800 0.79880 0.80216 0.78447 1.19218 1.20789 1.20743 1.21519 0.95980 0.99128 0.95430 0.90075 1.21868 0.99988 1.01979 0.96485 1.21649 0.96485 0.84432 0.97974 0.93981 0.89469 0.93930 0.92426 0.92484 0.87943 0.87819 0.89557 0.90945 0.88538 0.91306 0.90902 0.95598 0.83321 0.94025 0.89724 0.77483 0.91933 0.92245 0.92989 0.92340 0.89018 0.91465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.40 -3.64 10.70 -35.23 -0.38 -4.01 16 3 C 0.08 0.67 5.23 37.16 0.19 0.87 16 4 C -0.14 -1.11 4.42 -27.88 -0.12 -1.24 16 5 C 0.52 5.24 7.70 -10.99 -0.08 5.15 16 6 O -0.55 -7.26 15.40 5.55 0.09 -7.18 16 7 N -0.61 -5.33 2.41 -172.74 -0.42 -5.74 16 8 C 0.10 0.78 6.34 -3.71 -0.02 0.75 16 9 C -0.13 -1.16 4.92 -26.61 -0.13 -1.29 16 10 C -0.08 -0.72 2.07 -90.58 -0.19 -0.91 16 11 H 0.07 0.68 8.14 -51.92 -0.42 0.25 16 12 C 0.06 0.70 4.61 -3.82 -0.02 0.68 16 13 N -0.67 -9.93 5.56 -115.06 -0.64 -10.57 16 14 C 0.05 0.87 6.17 -4.98 -0.03 0.84 16 15 C 0.44 10.21 7.82 -10.99 -0.09 10.12 16 16 O -0.58 -15.49 15.78 5.55 0.09 -15.40 16 17 N -0.56 -14.16 5.29 -10.96 -0.06 -14.22 16 18 C -0.30 -8.29 9.68 -14.93 -0.14 -8.43 16 19 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 20 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 21 N -0.90 -24.40 13.05 55.50 0.72 -23.68 16 22 Si 0.93 20.91 29.55 -169.99 -5.02 15.88 16 23 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 24 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 25 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 26 C -0.10 -0.83 2.72 -90.48 -0.25 -1.08 16 27 H 0.08 0.62 8.14 -51.92 -0.42 0.20 16 28 C -0.15 -1.29 8.38 37.16 0.31 -0.98 16 29 C 0.12 1.01 5.83 -3.69 -0.02 0.99 16 30 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.04 0.24 8.14 -51.93 -0.42 -0.19 16 33 H 0.06 0.52 8.10 -51.93 -0.42 0.10 16 34 H 0.06 0.51 8.10 -51.93 -0.42 0.09 16 35 H 0.10 0.68 7.94 -51.93 -0.41 0.27 16 36 H 0.10 0.74 7.69 -51.93 -0.40 0.34 16 37 H 0.09 0.55 5.93 -51.93 -0.31 0.24 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.10 1.08 7.72 -51.93 -0.40 0.68 16 40 H 0.07 0.67 6.33 -51.93 -0.33 0.34 16 41 H 0.07 0.82 6.74 -51.93 -0.35 0.47 16 42 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 43 H 0.35 5.38 8.43 -39.29 -0.33 5.05 16 44 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 46 H 0.39 9.42 7.90 -40.82 -0.32 9.10 16 47 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 48 H 0.06 0.52 6.58 -51.93 -0.34 0.18 16 49 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 50 H 0.06 0.56 5.97 -51.93 -0.31 0.25 16 51 H 0.09 0.90 7.00 -51.93 -0.36 0.54 16 52 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 LS Contribution 410.91 15.07 6.19 6.19 Total: -1.00 -32.70 410.91 -7.87 -40.57 By element: Atomic # 1 Polarization: 19.75 SS G_CDS: -8.87 Total: 10.88 kcal Atomic # 6 Polarization: 6.86 SS G_CDS: 0.43 Total: 7.29 kcal Atomic # 7 Polarization: -53.82 SS G_CDS: -0.39 Total: -54.21 kcal Atomic # 8 Polarization: -26.39 SS G_CDS: -0.20 Total: -26.59 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -32.70 -7.87 -40.57 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183678208.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.597 kcal (2) G-P(sol) polarization free energy of solvation -32.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds