Wall clock time and date at job start Wed Apr 1 2020 01:21:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42901 * 113.99822 * 2 1 4 4 C 1.53006 * 109.46722 * 180.02562 * 3 2 1 5 5 C 1.50703 * 109.46854 * 180.02562 * 4 3 2 6 6 O 1.21287 * 120.00037 * 359.97438 * 5 4 3 7 7 N 1.34772 * 119.99912 * 179.97438 * 5 4 3 8 8 C 1.46930 * 120.63078 * 0.02636 * 7 5 4 9 9 C 1.53191 * 108.76206 * 233.59110 * 8 7 5 10 10 C 1.53039 * 109.31818 * 305.34456 * 9 8 7 11 11 H 1.09009 * 109.45565 * 301.37569 * 10 9 8 12 12 C 1.52993 * 109.46556 * 181.39984 * 10 9 8 13 13 N 1.46905 * 109.47039 * 64.97144 * 12 10 9 14 14 C 1.46901 * 110.99870 * 180.02562 * 13 12 10 15 15 C 1.50697 * 109.46943 * 180.02562 * 14 13 12 16 16 O 1.21292 * 120.00024 * 359.97438 * 15 14 13 17 17 N 1.34776 * 119.99767 * 180.02562 * 15 14 13 18 18 C 1.37097 * 119.99759 * 179.97438 * 17 15 14 19 19 H 1.08000 * 120.00171 * 359.97438 * 18 17 15 20 20 C 1.38951 * 120.00074 * 179.97438 * 18 17 15 21 21 N 1.31416 * 119.99768 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00310 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47134 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47103 * 120.00017 * 22 20 18 25 25 H 1.48494 * 109.47266 * 240.00436 * 22 20 18 26 26 C 1.53040 * 109.52530 * 61.38009 * 10 9 8 27 27 H 1.09010 * 109.49687 * 178.67878 * 26 10 9 28 28 C 1.53007 * 109.49375 * 58.58746 * 26 10 9 29 29 C 1.46928 * 120.62992 * 179.97438 * 7 5 4 30 30 H 1.09000 * 109.47481 * 59.99672 * 1 2 3 31 31 H 1.09000 * 109.47202 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47192 * 299.99660 * 1 2 3 33 33 H 1.08997 * 109.47151 * 60.00287 * 3 2 1 34 34 H 1.09003 * 109.47360 * 300.00038 * 3 2 1 35 35 H 1.08997 * 109.47254 * 60.00128 * 4 3 2 36 36 H 1.09003 * 109.47053 * 300.00005 * 4 3 2 37 37 H 1.09002 * 109.58429 * 353.36880 * 8 7 5 38 38 H 1.08994 * 109.58793 * 113.65314 * 8 7 5 39 39 H 1.09001 * 109.48886 * 185.39439 * 9 8 7 40 40 H 1.09005 * 109.50997 * 65.30503 * 9 8 7 41 41 H 1.09001 * 109.47393 * 304.97425 * 12 10 9 42 42 H 1.08998 * 109.47408 * 184.97071 * 12 10 9 43 43 H 1.00901 * 110.99869 * 56.04956 * 13 12 10 44 44 H 1.09004 * 109.47031 * 299.99620 * 14 13 12 45 45 H 1.08995 * 109.47111 * 59.99900 * 14 13 12 46 46 H 0.96997 * 120.00713 * 359.97438 * 17 15 14 47 47 H 0.96999 * 119.99907 * 179.97438 * 21 20 18 48 48 H 1.08997 * 109.47414 * 59.99729 * 28 26 10 49 49 H 1.08997 * 109.46630 * 179.97438 * 28 26 10 50 50 H 1.08998 * 109.46838 * 299.99519 * 28 26 10 51 51 H 1.08997 * 109.58456 * 6.63425 * 29 7 5 52 52 H 1.09000 * 109.70722 * 246.27173 * 29 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1484 2.5614 0.0000 6 8 3.4355 3.5426 0.0004 7 7 5.4888 2.7022 0.0001 8 6 6.3654 1.5231 -0.0010 9 6 7.3503 1.6403 1.1665 10 6 8.0927 2.9752 1.0705 11 1 8.6178 3.0309 0.1169 12 6 9.1022 3.0806 2.2153 13 7 10.1350 2.0483 2.0539 14 6 11.1237 2.1189 3.1381 15 6 12.1649 1.0479 2.9389 16 8 12.0904 0.2991 1.9876 17 7 13.1784 0.9214 3.8183 18 6 14.1253 -0.0533 3.6373 19 1 14.0590 -0.7200 2.7903 20 6 15.1705 -0.1834 4.5436 21 7 15.2509 0.6276 5.5746 22 14 16.4604 -1.5119 4.2975 23 1 16.1448 -2.2871 3.0709 24 1 17.7979 -0.8827 4.1543 25 1 16.4643 -2.4216 5.4711 26 6 7.0893 4.1266 1.1679 27 1 7.6209 5.0772 1.1231 28 6 6.3269 4.0290 2.4910 29 6 6.1011 4.0378 0.0002 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.6886 1.8464 0.8900 34 1 1.6886 1.8464 -0.8900 35 1 3.8567 0.6439 -0.8908 36 1 3.8575 0.6435 0.8891 37 1 5.7648 0.6212 0.1168 38 1 6.9141 1.4765 -0.9416 39 1 8.0677 0.8210 1.1207 40 1 6.8048 1.5944 2.1091 41 1 8.5896 2.9361 3.1663 42 1 9.5679 4.0659 2.1995 43 1 10.5812 2.1211 1.1519 44 1 11.6035 3.0977 3.1291 45 1 10.6248 1.9676 4.0953 46 1 13.2378 1.5200 4.5792 47 1 15.9803 0.5366 6.2075 48 1 7.0306 4.0894 3.3211 49 1 5.6127 4.8495 2.5601 50 1 5.7946 3.0788 2.5342 51 1 5.3262 4.7950 0.1187 52 1 6.6297 4.1999 -0.9392 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001183678208.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:21:07 Heat of formation + Delta-G solvation = -150.402041 kcal Electronic energy + Delta-G solvation = -29883.083951 eV Core-core repulsion = 25688.173859 eV Total energy + Delta-G solvation = -4194.910092 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.53471 -40.15989 -39.44983 -38.61317 -36.70994 -35.84887 -34.61843 -33.26889 -32.91749 -32.27820 -29.50346 -28.24394 -27.48984 -27.06989 -25.55650 -24.44613 -24.05113 -22.82334 -21.14530 -20.73709 -19.91664 -19.29197 -18.52929 -17.75001 -17.38086 -17.19791 -16.90665 -16.52596 -16.46398 -16.29689 -16.12721 -15.79799 -15.60056 -15.37522 -15.17322 -15.06350 -14.59545 -14.26811 -14.11581 -14.05567 -13.84058 -13.56299 -13.43070 -13.13491 -13.07759 -12.88569 -12.75575 -12.64334 -12.43620 -12.39220 -12.33109 -12.14121 -12.10639 -11.98294 -11.60760 -11.49859 -11.31620 -11.27123 -10.80988 -10.69163 -10.31671 -9.99817 -9.61720 -9.24907 -8.45677 -5.94217 1.37620 1.43007 1.55891 1.57034 1.89025 2.07462 2.30189 2.82828 2.95630 3.22004 3.54323 3.59980 3.76624 3.79335 3.97104 4.00310 4.07347 4.13226 4.26908 4.32901 4.39380 4.45683 4.48334 4.50374 4.50760 4.53772 4.58023 4.66937 4.71524 4.76106 4.77206 4.79722 4.82295 4.84920 4.89816 4.94432 5.04645 5.08292 5.21395 5.24744 5.36820 5.42477 5.53744 5.66388 5.92106 6.13043 6.14087 6.37557 6.47615 6.61574 7.10391 7.14193 7.58346 8.13352 8.71942 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.018622 B = 0.001744 C = 0.001649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.236898 B =16050.865354 C =16980.753299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.411 6.411 3 C 0.079 3.921 4 C -0.136 4.136 5 C 0.519 3.481 6 O -0.585 6.585 7 N -0.602 5.602 8 C 0.104 3.896 9 C -0.121 4.121 10 C -0.072 4.072 11 H 0.075 0.925 12 C 0.067 3.933 13 N -0.676 5.676 14 C 0.066 3.934 15 C 0.439 3.561 16 O -0.621 6.621 17 N -0.575 5.575 18 C -0.333 4.333 19 H 0.080 0.920 20 C -0.014 4.014 21 N -0.921 5.921 22 Si 0.993 3.007 23 H -0.273 1.273 24 H -0.271 1.271 25 H -0.272 1.272 26 C -0.092 4.092 27 H 0.093 0.907 28 C -0.143 4.143 29 C 0.116 3.884 30 H 0.049 0.951 31 H 0.101 0.899 32 H 0.047 0.953 33 H 0.049 0.951 34 H 0.051 0.949 35 H 0.118 0.882 36 H 0.114 0.886 37 H 0.102 0.898 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.064 0.936 41 H 0.074 0.926 42 H 0.037 0.963 43 H 0.344 0.656 44 H 0.063 0.937 45 H 0.100 0.900 46 H 0.396 0.604 47 H 0.277 0.723 48 H 0.061 0.939 49 H 0.048 0.952 50 H 0.049 0.951 51 H 0.079 0.921 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.123 6.455 -9.022 26.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.331 6.331 3 C 0.002 3.998 4 C -0.175 4.175 5 C 0.308 3.692 6 O -0.466 6.466 7 N -0.334 5.334 8 C -0.018 4.018 9 C -0.159 4.159 10 C -0.091 4.091 11 H 0.094 0.906 12 C -0.062 4.062 13 N -0.308 5.308 14 C -0.067 4.067 15 C 0.227 3.773 16 O -0.507 6.507 17 N -0.213 5.213 18 C -0.462 4.462 19 H 0.098 0.902 20 C -0.213 4.213 21 N -0.562 5.562 22 Si 0.817 3.183 23 H -0.197 1.197 24 H -0.197 1.197 25 H -0.197 1.197 26 C -0.111 4.111 27 H 0.111 0.889 28 C -0.200 4.200 29 C -0.006 4.006 30 H 0.067 0.933 31 H 0.120 0.880 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.137 0.863 36 H 0.132 0.868 37 H 0.120 0.880 38 H 0.100 0.900 39 H 0.096 0.904 40 H 0.082 0.918 41 H 0.092 0.908 42 H 0.055 0.945 43 H 0.162 0.838 44 H 0.081 0.919 45 H 0.118 0.882 46 H 0.230 0.770 47 H 0.086 0.914 48 H 0.080 0.920 49 H 0.067 0.933 50 H 0.068 0.932 51 H 0.097 0.903 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -24.657 5.825 -9.190 26.951 hybrid contribution 1.191 0.765 0.324 1.452 sum -23.466 6.590 -8.867 25.936 Atomic orbital electron populations 1.22938 0.79254 1.04024 1.00799 1.87782 1.21642 1.28026 1.95629 1.22100 0.92541 0.84122 1.01013 1.21503 0.94716 0.94295 1.06986 1.20702 0.82105 0.91331 0.75046 1.90678 1.61388 1.42149 1.52416 1.48143 1.05085 1.08264 1.71891 1.21996 0.92669 0.87459 0.99642 1.21855 0.97809 0.98039 0.98224 1.21063 0.94757 0.94867 0.98411 0.90633 1.22103 0.92323 0.92047 0.99730 1.60070 1.14858 1.50961 1.04951 1.21507 0.92146 0.95632 0.97414 1.20896 0.84152 0.88201 0.84100 1.90486 1.77888 1.48610 1.33742 1.41955 1.22960 1.31333 1.25004 1.19713 1.04292 1.11550 1.10682 0.90246 1.26033 1.00098 1.00350 0.94832 1.69681 1.33847 1.38871 1.13827 0.84872 0.77531 0.77670 0.78276 1.19735 1.19663 1.19712 1.21451 0.95526 0.99229 0.94936 0.88857 1.21834 0.99935 1.01352 0.96906 1.21674 0.96179 0.84121 0.98676 0.93277 0.88015 0.93431 0.93283 0.93026 0.86342 0.86759 0.87985 0.89971 0.90358 0.91768 0.90752 0.94472 0.83778 0.91903 0.88163 0.77049 0.91364 0.91997 0.93285 0.93241 0.90286 0.90276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 113.37 1.25 1.55 16 2 O -0.41 -7.20 10.70 -148.98 -1.59 -8.79 16 3 C 0.08 1.35 5.23 71.98 0.38 1.73 16 4 C -0.14 -1.98 4.42 29.85 0.13 -1.85 16 5 C 0.52 10.00 7.70 87.66 0.67 10.67 16 6 O -0.59 -15.47 15.40 -3.05 -0.05 -15.52 16 7 N -0.60 -9.75 2.41 -818.82 -1.97 -11.73 16 8 C 0.10 1.40 6.34 86.36 0.55 1.95 16 9 C -0.12 -2.07 4.92 30.67 0.15 -1.92 16 10 C -0.07 -1.19 2.07 -10.77 -0.02 -1.22 16 11 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 12 C 0.07 1.35 4.61 86.30 0.40 1.74 16 13 N -0.68 -19.20 5.56 -517.93 -2.88 -22.08 16 14 C 0.07 2.14 6.17 85.56 0.53 2.66 16 15 C 0.44 20.34 7.82 87.66 0.69 21.02 16 16 O -0.62 -33.45 15.78 -3.07 -0.05 -33.50 16 17 N -0.58 -29.12 5.29 -306.99 -1.62 -30.75 16 18 C -0.33 -18.74 9.68 84.04 0.81 -17.93 16 19 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 20 C -0.01 -0.72 5.50 84.93 0.47 -0.25 16 21 N -0.92 -49.39 13.05 21.66 0.28 -49.11 16 22 Si 0.99 42.59 29.55 68.60 2.03 44.62 16 23 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 24 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 25 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 26 C -0.09 -1.35 2.72 -10.70 -0.03 -1.38 16 27 H 0.09 1.19 8.14 -2.38 -0.02 1.17 16 28 C -0.14 -2.34 8.38 71.98 0.60 -1.73 16 29 C 0.12 1.84 5.83 86.38 0.50 2.34 16 30 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.05 0.90 8.10 -2.39 -0.02 0.88 16 34 H 0.05 0.91 8.10 -2.39 -0.02 0.90 16 35 H 0.12 1.35 7.94 -2.39 -0.02 1.33 16 36 H 0.11 1.43 7.69 -2.39 -0.02 1.42 16 37 H 0.10 1.07 5.93 -2.39 -0.01 1.06 16 38 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.08 1.68 7.72 -2.39 -0.02 1.66 16 40 H 0.06 1.16 6.33 -2.38 -0.02 1.15 16 41 H 0.07 1.51 6.74 -2.39 -0.02 1.49 16 42 H 0.04 0.69 8.14 -2.39 -0.02 0.68 16 43 H 0.34 10.28 8.43 -89.69 -0.76 9.53 16 44 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 45 H 0.10 3.00 8.14 -2.39 -0.02 2.98 16 46 H 0.40 19.07 7.90 -92.71 -0.73 18.34 16 47 H 0.28 13.87 8.31 -92.71 -0.77 13.10 16 48 H 0.06 0.97 6.58 -2.39 -0.02 0.96 16 49 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 50 H 0.05 0.90 5.97 -2.39 -0.01 0.88 16 51 H 0.08 1.50 7.00 -2.39 -0.02 1.49 16 52 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -70.72 410.91 0.67 -70.06 By element: Atomic # 1 Polarization: 39.95 SS G_CDS: -0.56 Total: 39.39 kcal Atomic # 6 Polarization: 10.32 SS G_CDS: 7.08 Total: 17.40 kcal Atomic # 7 Polarization: -107.47 SS G_CDS: -6.19 Total: -113.66 kcal Atomic # 8 Polarization: -56.12 SS G_CDS: -1.69 Total: -57.81 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.62 kcal Total: -70.72 0.67 -70.06 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183678208.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.345 kcal (2) G-P(sol) polarization free energy of solvation -70.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds