Wall clock time and date at job start Wed Apr 1 2020 01:21:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42903 * 114.00061 * 2 1 4 4 C 1.53000 * 109.47053 * 180.02562 * 3 2 1 5 5 C 1.50703 * 109.46665 * 179.97438 * 4 3 2 6 6 O 1.21276 * 120.00313 * 359.97438 * 5 4 3 7 7 N 1.34787 * 119.99759 * 179.97438 * 5 4 3 8 8 C 1.46924 * 120.63033 * 359.72119 * 7 5 4 9 9 C 1.53194 * 108.77334 * 233.88527 * 8 7 5 10 10 C 1.53038 * 109.31101 * 305.36035 * 9 8 7 11 11 H 1.08993 * 109.45369 * 301.35673 * 10 9 8 12 12 C 1.52997 * 109.45866 * 181.38783 * 10 9 8 13 13 N 1.46897 * 109.47375 * 64.93380 * 12 10 9 14 14 C 1.46901 * 111.00244 * 179.97438 * 13 12 10 15 15 C 1.50698 * 109.46830 * 179.97438 * 14 13 12 16 16 O 1.21288 * 120.00518 * 0.02562 * 15 14 13 17 17 N 1.34778 * 119.99608 * 180.02562 * 15 14 13 18 18 C 1.37102 * 119.99840 * 180.02562 * 17 15 14 19 19 H 1.07997 * 120.00012 * 359.97438 * 18 17 15 20 20 C 1.38953 * 119.99715 * 180.02562 * 18 17 15 21 21 N 1.31404 * 120.00249 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99749 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46991 * 90.00106 * 22 20 18 24 24 H 1.48498 * 109.47095 * 209.99875 * 22 20 18 25 25 H 1.48500 * 109.47192 * 330.00394 * 22 20 18 26 26 C 1.53045 * 109.53516 * 61.36880 * 10 9 8 27 27 H 1.09001 * 109.52360 * 58.59815 * 26 10 9 28 28 C 1.53000 * 109.49499 * 178.68120 * 26 10 9 29 29 C 1.46926 * 120.62918 * 180.02562 * 7 5 4 30 30 H 1.09001 * 109.47099 * 299.99374 * 1 2 3 31 31 H 1.08990 * 109.47378 * 60.00144 * 1 2 3 32 32 H 1.09000 * 109.46928 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47025 * 60.00226 * 3 2 1 34 34 H 1.09001 * 109.47011 * 300.00438 * 3 2 1 35 35 H 1.08998 * 109.47231 * 60.00094 * 4 3 2 36 36 H 1.09001 * 109.47359 * 299.99966 * 4 3 2 37 37 H 1.09004 * 109.58777 * 353.67036 * 8 7 5 38 38 H 1.08994 * 109.58607 * 114.09373 * 8 7 5 39 39 H 1.09005 * 109.49558 * 185.41228 * 9 8 7 40 40 H 1.08996 * 109.52408 * 65.33314 * 9 8 7 41 41 H 1.09001 * 109.47304 * 184.93831 * 12 10 9 42 42 H 1.09004 * 109.47423 * 304.93550 * 12 10 9 43 43 H 1.00899 * 110.99747 * 303.95798 * 13 12 10 44 44 H 1.08997 * 109.47465 * 300.00199 * 14 13 12 45 45 H 1.09002 * 109.46764 * 60.00354 * 14 13 12 46 46 H 0.97003 * 120.00541 * 359.97438 * 17 15 14 47 47 H 0.97003 * 120.00299 * 179.97438 * 21 20 18 48 48 H 1.09006 * 109.46759 * 179.83882 * 28 26 10 49 49 H 1.08997 * 109.47112 * 299.83408 * 28 26 10 50 50 H 1.08995 * 109.47318 * 59.84099 * 28 26 10 51 51 H 1.09001 * 109.58178 * 245.90575 * 29 7 5 52 52 H 1.09004 * 109.58598 * 6.32579 * 29 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 6 4.1483 2.5614 -0.0013 6 8 3.4355 3.5425 -0.0017 7 7 5.4888 2.7023 -0.0014 8 6 6.3654 1.5233 0.0053 9 6 7.3451 1.6439 1.1768 10 6 8.0876 2.9786 1.0803 11 1 8.6171 3.0315 0.1291 12 6 9.0918 3.0875 2.2294 13 7 10.1249 2.0544 2.0765 14 6 11.1092 2.1291 3.1644 15 6 12.1502 1.0562 2.9744 16 8 12.0795 0.3037 2.0258 17 7 13.1599 0.9328 3.8586 18 6 14.1074 -0.0429 3.6854 19 1 14.0444 -0.7129 2.8407 20 6 15.1480 -0.1704 4.5973 21 7 15.2244 0.6445 5.6253 22 14 16.4385 -1.5003 4.3618 23 1 17.5545 -0.9671 3.5398 24 1 16.9584 -1.9256 5.6861 25 1 15.8285 -2.6654 3.6720 26 6 7.0837 4.1303 1.1696 27 1 6.5361 4.0642 2.1097 28 6 7.8301 5.4644 1.1060 29 6 6.1011 4.0379 -0.0014 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.6886 1.8464 0.8900 34 1 1.6885 1.8464 -0.8900 35 1 3.8567 0.6439 -0.8908 36 1 3.8575 0.6436 0.8891 37 1 5.7643 0.6216 0.1230 38 1 6.9203 1.4752 -0.9317 39 1 8.0629 0.8246 1.1367 40 1 6.7956 1.6004 2.1171 41 1 9.5578 4.0727 2.2126 42 1 8.5746 2.9464 3.1785 43 1 9.7121 1.1352 2.0243 44 1 11.5892 3.1076 3.1537 45 1 10.6063 1.9816 4.1202 46 1 13.2168 1.5349 4.6170 47 1 15.9507 0.5553 6.2621 48 1 7.1144 6.2844 1.1668 49 1 8.5291 5.5297 1.9398 50 1 8.3784 5.5296 0.1662 51 1 6.6344 4.1953 -0.9390 52 1 5.3255 4.7954 0.1118 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001183678210.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:21:14 Heat of formation + Delta-G solvation = -129.457139 kcal Electronic energy + Delta-G solvation = -29695.120056 eV Core-core repulsion = 25501.118204 eV Total energy + Delta-G solvation = -4194.001852 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.72102 -38.85696 -38.22167 -37.88136 -35.60817 -34.17940 -33.73791 -32.20816 -31.88232 -31.20217 -28.29646 -27.59435 -26.60355 -25.84135 -24.19059 -23.58434 -22.99022 -21.78004 -20.27056 -19.30708 -19.17732 -17.91437 -17.74511 -16.74485 -16.55608 -16.30611 -15.96324 -15.66513 -15.37766 -15.19433 -14.94455 -14.61210 -14.35977 -14.16855 -14.15112 -13.90168 -13.68327 -13.45019 -13.15595 -12.90970 -12.73953 -12.46228 -12.44537 -12.25636 -12.02216 -11.85179 -11.75245 -11.60574 -11.53918 -11.51186 -11.27148 -11.05579 -10.88831 -10.59066 -10.49420 -10.40151 -10.22417 -10.09142 -10.08516 -9.51727 -8.94885 -8.46429 -8.06211 -7.96574 -6.42505 -3.83411 2.27372 2.52384 3.17286 3.25960 3.31640 3.40440 3.90144 4.06895 4.22433 4.27962 4.38077 4.53836 4.59685 4.64483 4.69432 4.72125 4.92039 4.95038 4.96227 5.03128 5.10187 5.15258 5.20680 5.24756 5.26985 5.30972 5.36310 5.36796 5.39956 5.46645 5.51862 5.52637 5.67952 5.70708 5.76002 5.80395 5.87230 5.94654 6.00151 6.04267 6.20960 6.25738 6.30650 6.70376 7.04346 7.21691 7.54339 7.66049 7.80767 8.05576 8.60429 9.17036 9.53602 10.04925 10.75197 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.016573 B = 0.001760 C = 0.001632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.119398 B =15901.795603 C =17151.037178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.395 6.395 3 C 0.077 3.923 4 C -0.141 4.141 5 C 0.521 3.479 6 O -0.547 6.547 7 N -0.609 5.609 8 C 0.105 3.895 9 C -0.135 4.135 10 C -0.080 4.080 11 H 0.085 0.915 12 C 0.061 3.939 13 N -0.668 5.668 14 C 0.050 3.950 15 C 0.441 3.559 16 O -0.584 6.584 17 N -0.564 5.564 18 C -0.300 4.300 19 H 0.103 0.897 20 C 0.022 3.978 21 N -0.902 5.902 22 Si 0.930 3.070 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.270 1.270 26 C -0.099 4.099 27 H 0.073 0.927 28 C -0.148 4.148 29 C 0.117 3.883 30 H 0.042 0.958 31 H 0.042 0.958 32 H 0.087 0.913 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.103 0.897 36 H 0.103 0.897 37 H 0.087 0.913 38 H 0.076 0.924 39 H 0.086 0.914 40 H 0.065 0.935 41 H 0.076 0.924 42 H 0.025 0.975 43 H 0.347 0.653 44 H 0.085 0.915 45 H 0.042 0.958 46 H 0.392 0.608 47 H 0.271 0.729 48 H 0.055 0.945 49 H 0.065 0.935 50 H 0.059 0.941 51 H 0.069 0.931 52 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.558 5.783 -8.531 26.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.314 6.314 3 C 0.000 4.000 4 C -0.180 4.180 5 C 0.309 3.691 6 O -0.425 6.425 7 N -0.342 5.342 8 C -0.017 4.017 9 C -0.174 4.174 10 C -0.099 4.099 11 H 0.104 0.896 12 C -0.068 4.068 13 N -0.302 5.302 14 C -0.082 4.082 15 C 0.226 3.774 16 O -0.468 6.468 17 N -0.200 5.200 18 C -0.429 4.429 19 H 0.121 0.879 20 C -0.179 4.179 21 N -0.543 5.543 22 Si 0.757 3.243 23 H -0.204 1.204 24 H -0.209 1.209 25 H -0.194 1.194 26 C -0.119 4.119 27 H 0.091 0.909 28 C -0.206 4.206 29 C -0.005 4.005 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.105 0.895 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.121 0.879 36 H 0.122 0.878 37 H 0.106 0.894 38 H 0.094 0.906 39 H 0.104 0.896 40 H 0.084 0.916 41 H 0.094 0.906 42 H 0.043 0.957 43 H 0.167 0.833 44 H 0.103 0.897 45 H 0.060 0.940 46 H 0.225 0.775 47 H 0.081 0.919 48 H 0.074 0.926 49 H 0.084 0.916 50 H 0.079 0.921 51 H 0.088 0.912 52 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -24.344 5.992 -9.450 26.792 hybrid contribution 0.205 -0.423 1.305 1.387 sum -24.138 5.568 -8.145 26.077 Atomic orbital electron populations 1.22738 0.80518 1.02832 1.00203 1.87809 1.20131 1.27937 1.95566 1.22161 0.91894 0.84269 1.01721 1.21514 0.95423 0.95343 1.05759 1.20385 0.81919 0.91058 0.75713 1.90696 1.60516 1.40880 1.50441 1.48128 1.05277 1.07870 1.72916 1.21854 0.92746 0.87487 0.99647 1.22032 0.98289 0.98830 0.98221 1.21185 0.94759 0.93534 1.00449 0.89640 1.22081 0.92013 0.96803 0.95902 1.60117 1.15811 1.08267 1.45969 1.21665 0.94174 0.99952 0.92435 1.19818 0.84633 0.87640 0.85293 1.90514 1.77236 1.46775 1.32280 1.41871 1.22746 1.31220 1.24210 1.19709 1.02729 1.10132 1.10376 0.87911 1.25260 0.98736 0.98523 0.95408 1.69610 1.33342 1.37906 1.13444 0.85856 0.80325 0.80622 0.77473 1.20386 1.20949 1.19436 1.21480 0.96001 0.95582 0.98804 0.90887 1.21837 1.00295 0.95714 1.02752 1.21688 0.96380 0.84103 0.98344 0.93929 0.93942 0.89456 0.92415 0.92425 0.87882 0.87838 0.89436 0.90583 0.89552 0.91607 0.90564 0.95722 0.83285 0.89659 0.94015 0.77469 0.91878 0.92600 0.91644 0.92145 0.91230 0.89009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.40 -3.56 10.70 -35.23 -0.38 -3.94 16 3 C 0.08 0.66 5.23 37.16 0.19 0.85 16 4 C -0.14 -1.08 4.42 -27.88 -0.12 -1.20 16 5 C 0.52 5.22 7.70 -10.98 -0.08 5.13 16 6 O -0.55 -7.26 15.39 5.56 0.09 -7.17 16 7 N -0.61 -5.37 2.97 -172.79 -0.51 -5.89 16 8 C 0.11 0.77 6.34 -3.71 -0.02 0.75 16 9 C -0.14 -1.17 5.16 -26.61 -0.14 -1.31 16 10 C -0.08 -0.76 1.90 -90.58 -0.17 -0.93 16 11 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 12 C 0.06 0.70 4.90 -3.83 -0.02 0.68 16 13 N -0.67 -10.24 6.12 -115.06 -0.70 -10.95 16 14 C 0.05 0.87 6.17 -4.98 -0.03 0.84 16 15 C 0.44 10.29 7.82 -10.99 -0.09 10.20 16 16 O -0.58 -15.63 15.78 5.55 0.09 -15.54 16 17 N -0.56 -14.20 5.29 -10.96 -0.06 -14.26 16 18 C -0.30 -8.33 9.68 -14.93 -0.14 -8.47 16 19 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 20 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 21 N -0.90 -24.41 13.05 55.50 0.72 -23.69 16 22 Si 0.93 20.93 29.55 -169.99 -5.02 15.91 16 23 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 24 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 25 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 26 C -0.10 -0.84 2.41 -90.52 -0.22 -1.06 16 27 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 28 C -0.15 -1.15 8.81 37.16 0.33 -0.82 16 29 C 0.12 1.03 5.71 -3.74 -0.02 1.01 16 30 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.04 0.23 8.14 -51.93 -0.42 -0.20 16 32 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.52 8.10 -51.93 -0.42 0.09 16 34 H 0.06 0.50 8.10 -51.93 -0.42 0.08 16 35 H 0.10 0.66 7.95 -51.93 -0.41 0.25 16 36 H 0.10 0.70 7.68 -51.93 -0.40 0.30 16 37 H 0.09 0.51 5.93 -51.93 -0.31 0.20 16 38 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.09 0.82 6.62 -51.93 -0.34 0.47 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.08 0.85 6.14 -51.93 -0.32 0.53 16 42 H 0.02 0.28 8.14 -51.93 -0.42 -0.15 16 43 H 0.35 5.42 6.65 -39.29 -0.26 5.15 16 44 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 45 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.39 9.44 7.90 -40.82 -0.32 9.12 16 47 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 48 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 49 H 0.06 0.52 6.30 -51.93 -0.33 0.20 16 50 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 51 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 52 H 0.09 0.91 7.00 -51.93 -0.36 0.55 16 LS Contribution 412.65 15.07 6.22 6.22 Total: -1.00 -33.16 412.65 -7.99 -41.15 By element: Atomic # 1 Polarization: 19.58 SS G_CDS: -8.91 Total: 10.67 kcal Atomic # 6 Polarization: 7.01 SS G_CDS: 0.48 Total: 7.48 kcal Atomic # 7 Polarization: -54.23 SS G_CDS: -0.55 Total: -54.78 kcal Atomic # 8 Polarization: -26.44 SS G_CDS: -0.20 Total: -26.65 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -33.16 -7.99 -41.15 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183678210.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.312 kcal (2) G-P(sol) polarization free energy of solvation -33.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds