Wall clock time and date at job start Wed Apr 1 2020 01:21:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42903 * 114.00061 * 2 1 4 4 C 1.53000 * 109.47053 * 180.02562 * 3 2 1 5 5 C 1.50703 * 109.46665 * 179.97438 * 4 3 2 6 6 O 1.21276 * 120.00313 * 359.97438 * 5 4 3 7 7 N 1.34787 * 119.99759 * 179.97438 * 5 4 3 8 8 C 1.46924 * 120.63033 * 359.72119 * 7 5 4 9 9 C 1.53194 * 108.77334 * 233.88527 * 8 7 5 10 10 C 1.53038 * 109.31101 * 305.36035 * 9 8 7 11 11 H 1.08993 * 109.45369 * 301.35673 * 10 9 8 12 12 C 1.52997 * 109.45866 * 181.38783 * 10 9 8 13 13 N 1.46897 * 109.47375 * 64.93380 * 12 10 9 14 14 C 1.46901 * 111.00244 * 179.97438 * 13 12 10 15 15 C 1.50698 * 109.46830 * 179.97438 * 14 13 12 16 16 O 1.21288 * 120.00518 * 0.02562 * 15 14 13 17 17 N 1.34778 * 119.99608 * 180.02562 * 15 14 13 18 18 C 1.37102 * 119.99840 * 180.02562 * 17 15 14 19 19 H 1.07997 * 120.00012 * 359.97438 * 18 17 15 20 20 C 1.38953 * 119.99715 * 180.02562 * 18 17 15 21 21 N 1.31404 * 120.00249 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99749 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46991 * 90.00106 * 22 20 18 24 24 H 1.48498 * 109.47095 * 209.99875 * 22 20 18 25 25 H 1.48500 * 109.47192 * 330.00394 * 22 20 18 26 26 C 1.53045 * 109.53516 * 61.36880 * 10 9 8 27 27 H 1.09001 * 109.52360 * 58.59815 * 26 10 9 28 28 C 1.53000 * 109.49499 * 178.68120 * 26 10 9 29 29 C 1.46926 * 120.62918 * 180.02562 * 7 5 4 30 30 H 1.09001 * 109.47099 * 299.99374 * 1 2 3 31 31 H 1.08990 * 109.47378 * 60.00144 * 1 2 3 32 32 H 1.09000 * 109.46928 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47025 * 60.00226 * 3 2 1 34 34 H 1.09001 * 109.47011 * 300.00438 * 3 2 1 35 35 H 1.08998 * 109.47231 * 60.00094 * 4 3 2 36 36 H 1.09001 * 109.47359 * 299.99966 * 4 3 2 37 37 H 1.09004 * 109.58777 * 353.67036 * 8 7 5 38 38 H 1.08994 * 109.58607 * 114.09373 * 8 7 5 39 39 H 1.09005 * 109.49558 * 185.41228 * 9 8 7 40 40 H 1.08996 * 109.52408 * 65.33314 * 9 8 7 41 41 H 1.09001 * 109.47304 * 184.93831 * 12 10 9 42 42 H 1.09004 * 109.47423 * 304.93550 * 12 10 9 43 43 H 1.00899 * 110.99747 * 303.95798 * 13 12 10 44 44 H 1.08997 * 109.47465 * 300.00199 * 14 13 12 45 45 H 1.09002 * 109.46764 * 60.00354 * 14 13 12 46 46 H 0.97003 * 120.00541 * 359.97438 * 17 15 14 47 47 H 0.97003 * 120.00299 * 179.97438 * 21 20 18 48 48 H 1.09006 * 109.46759 * 179.83882 * 28 26 10 49 49 H 1.08997 * 109.47112 * 299.83408 * 28 26 10 50 50 H 1.08995 * 109.47318 * 59.84099 * 28 26 10 51 51 H 1.09001 * 109.58178 * 245.90575 * 29 7 5 52 52 H 1.09004 * 109.58598 * 6.32579 * 29 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 6 4.1483 2.5614 -0.0013 6 8 3.4355 3.5425 -0.0017 7 7 5.4888 2.7023 -0.0014 8 6 6.3654 1.5233 0.0053 9 6 7.3451 1.6439 1.1768 10 6 8.0876 2.9786 1.0803 11 1 8.6171 3.0315 0.1291 12 6 9.0918 3.0875 2.2294 13 7 10.1249 2.0544 2.0765 14 6 11.1092 2.1291 3.1644 15 6 12.1502 1.0562 2.9744 16 8 12.0795 0.3037 2.0258 17 7 13.1599 0.9328 3.8586 18 6 14.1074 -0.0429 3.6854 19 1 14.0444 -0.7129 2.8407 20 6 15.1480 -0.1704 4.5973 21 7 15.2244 0.6445 5.6253 22 14 16.4385 -1.5003 4.3618 23 1 17.5545 -0.9671 3.5398 24 1 16.9584 -1.9256 5.6861 25 1 15.8285 -2.6654 3.6720 26 6 7.0837 4.1303 1.1696 27 1 6.5361 4.0642 2.1097 28 6 7.8301 5.4644 1.1060 29 6 6.1011 4.0379 -0.0014 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.6886 1.8464 0.8900 34 1 1.6885 1.8464 -0.8900 35 1 3.8567 0.6439 -0.8908 36 1 3.8575 0.6436 0.8891 37 1 5.7643 0.6216 0.1230 38 1 6.9203 1.4752 -0.9317 39 1 8.0629 0.8246 1.1367 40 1 6.7956 1.6004 2.1171 41 1 9.5578 4.0727 2.2126 42 1 8.5746 2.9464 3.1785 43 1 9.7121 1.1352 2.0243 44 1 11.5892 3.1076 3.1537 45 1 10.6063 1.9816 4.1202 46 1 13.2168 1.5349 4.6170 47 1 15.9507 0.5553 6.2621 48 1 7.1144 6.2844 1.1668 49 1 8.5291 5.5297 1.9398 50 1 8.3784 5.5296 0.1662 51 1 6.6344 4.1953 -0.9390 52 1 5.3255 4.7954 0.1118 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001183678210.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:21:14 Heat of formation + Delta-G solvation = -153.531143 kcal Electronic energy + Delta-G solvation = -29696.163983 eV Core-core repulsion = 25501.118204 eV Total energy + Delta-G solvation = -4195.045780 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.47235 -40.18385 -39.43451 -38.63362 -36.72867 -35.87128 -34.84247 -33.29227 -32.92569 -32.58122 -29.44601 -28.21347 -27.42792 -27.06895 -25.59501 -24.49070 -23.70116 -22.63701 -21.22541 -20.84842 -19.97272 -19.87998 -18.46468 -17.85438 -17.38887 -17.29221 -17.01366 -16.64772 -16.43516 -16.18267 -16.06443 -15.76304 -15.60820 -15.44528 -15.04161 -14.88295 -14.77473 -14.44972 -14.17047 -13.88276 -13.68959 -13.66141 -13.43034 -13.17152 -13.04461 -12.95542 -12.79899 -12.65435 -12.53462 -12.43650 -12.40699 -12.14192 -12.11509 -11.99210 -11.71105 -11.49685 -11.38161 -11.24821 -10.86617 -10.69845 -10.32703 -10.00472 -9.68185 -9.28898 -8.45712 -5.94440 1.39056 1.42939 1.51784 1.55516 1.84439 2.06566 2.30079 2.80631 2.94464 3.21785 3.53891 3.56099 3.70682 3.82389 3.88101 3.99035 3.99911 4.05689 4.27678 4.33780 4.37333 4.45327 4.47830 4.49765 4.50450 4.52954 4.54061 4.57414 4.68878 4.71486 4.75472 4.78654 4.81049 4.84567 4.86527 4.95524 4.97222 5.04962 5.17530 5.22340 5.35405 5.41945 5.48694 5.56766 5.91286 6.12100 6.12937 6.33138 6.46623 6.61131 7.06019 7.13608 7.57543 8.12534 8.71617 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.016573 B = 0.001760 C = 0.001632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.119398 B =15901.795603 C =17151.037178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.411 6.411 3 C 0.079 3.921 4 C -0.135 4.135 5 C 0.518 3.482 6 O -0.585 6.585 7 N -0.606 5.606 8 C 0.106 3.894 9 C -0.133 4.133 10 C -0.074 4.074 11 H 0.078 0.922 12 C 0.065 3.935 13 N -0.680 5.680 14 C 0.064 3.936 15 C 0.438 3.562 16 O -0.622 6.622 17 N -0.574 5.574 18 C -0.334 4.334 19 H 0.080 0.920 20 C -0.013 4.013 21 N -0.920 5.920 22 Si 0.993 3.007 23 H -0.272 1.272 24 H -0.271 1.271 25 H -0.272 1.272 26 C -0.088 4.088 27 H 0.067 0.933 28 C -0.147 4.147 29 C 0.117 3.883 30 H 0.047 0.953 31 H 0.049 0.951 32 H 0.102 0.898 33 H 0.049 0.951 34 H 0.051 0.949 35 H 0.120 0.880 36 H 0.117 0.883 37 H 0.107 0.893 38 H 0.083 0.917 39 H 0.079 0.921 40 H 0.066 0.934 41 H 0.081 0.919 42 H 0.032 0.968 43 H 0.344 0.656 44 H 0.102 0.898 45 H 0.063 0.937 46 H 0.396 0.604 47 H 0.277 0.723 48 H 0.061 0.939 49 H 0.064 0.936 50 H 0.061 0.939 51 H 0.077 0.923 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.821 5.568 -8.450 26.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.330 6.330 3 C 0.002 3.998 4 C -0.174 4.174 5 C 0.308 3.692 6 O -0.466 6.466 7 N -0.338 5.338 8 C -0.016 4.016 9 C -0.171 4.171 10 C -0.093 4.093 11 H 0.096 0.904 12 C -0.064 4.064 13 N -0.313 5.313 14 C -0.068 4.068 15 C 0.226 3.774 16 O -0.508 6.508 17 N -0.211 5.211 18 C -0.464 4.464 19 H 0.098 0.902 20 C -0.213 4.213 21 N -0.561 5.561 22 Si 0.817 3.183 23 H -0.197 1.197 24 H -0.196 1.196 25 H -0.197 1.197 26 C -0.108 4.108 27 H 0.085 0.915 28 C -0.204 4.204 29 C -0.005 4.005 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.120 0.880 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.138 0.862 36 H 0.135 0.865 37 H 0.126 0.874 38 H 0.101 0.899 39 H 0.097 0.903 40 H 0.084 0.916 41 H 0.100 0.900 42 H 0.050 0.950 43 H 0.164 0.836 44 H 0.120 0.880 45 H 0.081 0.919 46 H 0.230 0.770 47 H 0.087 0.913 48 H 0.080 0.920 49 H 0.083 0.917 50 H 0.080 0.920 51 H 0.096 0.904 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -24.605 5.793 -9.356 26.954 hybrid contribution 0.232 -0.328 1.257 1.320 sum -24.373 5.465 -8.099 26.258 Atomic orbital electron populations 1.22936 0.79248 1.04036 1.00802 1.87777 1.21640 1.27981 1.95631 1.22103 0.92554 0.84155 1.01038 1.21501 0.94695 0.94060 1.07144 1.20777 0.82025 0.91481 0.74952 1.90679 1.61385 1.42245 1.52336 1.48203 1.05204 1.08321 1.72099 1.21958 0.92599 0.87614 0.99396 1.21989 0.98276 0.98001 0.98847 1.21113 0.94495 0.94460 0.99237 0.90378 1.22145 0.91489 0.95726 0.97034 1.60126 1.16806 1.09057 1.45354 1.21525 0.93141 0.98060 0.94104 1.20881 0.84743 0.87965 0.83857 1.90482 1.78145 1.48526 1.33649 1.41946 1.23143 1.31131 1.24898 1.19683 1.04644 1.11392 1.10674 0.90228 1.26033 1.00055 1.00378 0.94790 1.69669 1.33978 1.38762 1.13731 0.84928 0.77719 0.77829 0.77865 1.19709 1.19610 1.19701 1.21365 0.95522 0.95577 0.98346 0.91453 1.21826 1.00346 0.95469 1.02799 1.21678 0.96038 0.84004 0.98828 0.93434 0.93283 0.87998 0.93268 0.93043 0.86200 0.86512 0.87448 0.89883 0.90267 0.91552 0.90036 0.94956 0.83614 0.87985 0.91901 0.77022 0.91335 0.91968 0.91702 0.91969 0.90450 0.90244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 113.37 1.25 1.54 16 2 O -0.41 -6.95 10.70 -148.98 -1.59 -8.55 16 3 C 0.08 1.30 5.23 71.98 0.38 1.67 16 4 C -0.13 -1.87 4.42 29.85 0.13 -1.73 16 5 C 0.52 9.91 7.70 87.66 0.67 10.59 16 6 O -0.59 -15.54 15.39 -3.02 -0.05 -15.58 16 7 N -0.61 -9.90 2.97 -818.98 -2.43 -12.33 16 8 C 0.11 1.36 6.34 86.36 0.55 1.91 16 9 C -0.13 -2.09 5.16 30.67 0.16 -1.93 16 10 C -0.07 -1.29 1.90 -10.77 -0.02 -1.31 16 11 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 12 C 0.06 1.36 4.90 86.30 0.42 1.78 16 13 N -0.68 -19.95 6.12 -517.94 -3.17 -23.12 16 14 C 0.06 2.13 6.17 85.56 0.53 2.66 16 15 C 0.44 20.47 7.82 87.66 0.69 21.15 16 16 O -0.62 -33.74 15.78 -3.05 -0.05 -33.79 16 17 N -0.57 -29.16 5.29 -306.99 -1.62 -30.78 16 18 C -0.33 -18.86 9.68 84.04 0.81 -18.04 16 19 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 20 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 21 N -0.92 -49.35 13.05 21.66 0.28 -49.06 16 22 Si 0.99 42.57 29.55 68.60 2.03 44.60 16 23 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 24 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 25 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 26 C -0.09 -1.37 2.41 -10.73 -0.03 -1.40 16 27 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 28 C -0.15 -2.06 8.81 71.98 0.63 -1.43 16 29 C 0.12 1.93 5.71 86.35 0.49 2.43 16 30 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.05 0.88 8.10 -2.39 -0.02 0.86 16 34 H 0.05 0.89 8.10 -2.39 -0.02 0.87 16 35 H 0.12 1.27 7.95 -2.39 -0.02 1.25 16 36 H 0.12 1.33 7.68 -2.39 -0.02 1.31 16 37 H 0.11 0.97 5.93 -2.38 -0.01 0.95 16 38 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.08 1.40 6.62 -2.38 -0.02 1.38 16 40 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.08 1.65 6.14 -2.39 -0.01 1.63 16 42 H 0.03 0.65 8.14 -2.38 -0.02 0.63 16 43 H 0.34 10.44 6.65 -89.69 -0.60 9.84 16 44 H 0.10 3.08 8.14 -2.39 -0.02 3.06 16 45 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 46 H 0.40 19.12 7.90 -92.71 -0.73 18.39 16 47 H 0.28 13.92 8.31 -92.71 -0.77 13.15 16 48 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 49 H 0.06 0.93 6.30 -2.39 -0.02 0.91 16 50 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 51 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 52 H 0.08 1.55 7.00 -2.38 -0.02 1.54 16 Total: -1.00 -71.53 412.65 0.12 -71.40 By element: Atomic # 1 Polarization: 39.95 SS G_CDS: -0.40 Total: 39.55 kcal Atomic # 6 Polarization: 10.53 SS G_CDS: 7.14 Total: 17.67 kcal Atomic # 7 Polarization: -108.35 SS G_CDS: -6.95 Total: -115.30 kcal Atomic # 8 Polarization: -56.23 SS G_CDS: -1.69 Total: -57.92 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.60 kcal Total: -71.53 0.12 -71.40 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183678210.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.127 kcal (2) G-P(sol) polarization free energy of solvation -71.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds