Wall clock time and date at job start Wed Apr 1 2020 01:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42892 * 113.99902 * 2 1 4 4 C 1.53005 * 109.47021 * 179.97438 * 3 2 1 5 5 C 1.50698 * 109.47042 * 180.02562 * 4 3 2 6 6 O 1.21276 * 120.00564 * 0.02562 * 5 4 3 7 7 N 1.34784 * 119.99966 * 179.97438 * 5 4 3 8 8 C 1.46928 * 120.62829 * 359.97438 * 7 5 4 9 9 C 1.53191 * 108.77343 * 126.41175 * 8 7 5 10 10 C 1.53039 * 109.31416 * 54.63452 * 9 8 7 11 11 H 1.09007 * 109.45640 * 58.65727 * 10 9 8 12 12 C 1.52996 * 109.45888 * 178.62533 * 10 9 8 13 13 N 1.46905 * 109.47412 * 294.99854 * 12 10 9 14 14 C 1.46897 * 110.99988 * 179.97438 * 13 12 10 15 15 C 1.50700 * 109.46964 * 180.02562 * 14 13 12 16 16 O 1.21290 * 120.00039 * 0.02562 * 15 14 13 17 17 N 1.34780 * 119.99921 * 180.02562 * 15 14 13 18 18 C 1.37095 * 119.99992 * 179.97438 * 17 15 14 19 19 H 1.07996 * 120.00027 * 359.97438 * 18 17 15 20 20 C 1.38956 * 120.00162 * 179.97438 * 18 17 15 21 21 N 1.31409 * 119.99603 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 119.99962 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47255 * 89.99833 * 22 20 18 24 24 H 1.48500 * 109.46842 * 210.00134 * 22 20 18 25 25 H 1.48504 * 109.47267 * 329.99365 * 22 20 18 26 26 C 1.53070 * 109.65812 * 298.69913 * 10 9 8 27 27 H 1.09003 * 109.62046 * 181.16739 * 26 10 9 28 28 C 1.52992 * 109.38974 * 301.27704 * 26 10 9 29 29 C 1.46919 * 120.63188 * 179.97438 * 7 5 4 30 30 H 1.08997 * 109.47476 * 300.00199 * 1 2 3 31 31 H 1.09000 * 109.47083 * 60.00069 * 1 2 3 32 32 H 1.08997 * 109.47373 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47566 * 59.99833 * 3 2 1 34 34 H 1.09000 * 109.47634 * 299.99796 * 3 2 1 35 35 H 1.09000 * 109.46893 * 59.99658 * 4 3 2 36 36 H 1.09005 * 109.46961 * 300.00002 * 4 3 2 37 37 H 1.08998 * 109.58787 * 246.20220 * 8 7 5 38 38 H 1.08999 * 109.58470 * 6.62573 * 8 7 5 39 39 H 1.09002 * 109.49529 * 174.58688 * 9 8 7 40 40 H 1.09005 * 109.49968 * 294.64599 * 9 8 7 41 41 H 1.09002 * 109.47374 * 55.00378 * 12 10 9 42 42 H 1.09001 * 109.46991 * 175.00478 * 12 10 9 43 43 H 1.00899 * 110.99662 * 303.96075 * 13 12 10 44 44 H 1.08996 * 109.47596 * 300.00578 * 14 13 12 45 45 H 1.09006 * 109.46524 * 60.00604 * 14 13 12 46 46 H 0.96996 * 120.00097 * 0.02562 * 17 15 14 47 47 H 0.96999 * 119.99594 * 180.02562 * 21 20 18 48 48 H 1.08999 * 109.47306 * 179.75054 * 28 26 10 49 49 H 1.09002 * 109.47236 * 299.74934 * 28 26 10 50 50 H 1.08998 * 109.47429 * 59.75154 * 28 26 10 51 51 H 1.09002 * 109.58751 * 353.37646 * 29 7 5 52 52 H 1.08996 * 109.58750 * 113.65831 * 29 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1484 2.5613 0.0013 6 8 3.4356 3.5425 0.0017 7 7 5.4888 2.7022 0.0024 8 6 6.3654 1.5231 0.0037 9 6 7.3516 1.6406 -1.1628 10 6 8.0936 2.9756 -1.0657 11 1 8.6181 3.0309 -0.1117 12 6 9.1039 3.0816 -2.2097 13 7 10.1371 2.0499 -2.0478 14 6 11.1264 2.1211 -3.1313 15 6 12.1675 1.0498 -2.9321 16 8 12.0923 0.3004 -1.9814 17 7 13.1820 0.9245 -3.8105 18 6 14.1294 -0.0498 -3.6290 19 1 14.0629 -0.7165 -2.7820 20 6 15.1751 -0.1794 -4.5348 21 7 15.2562 0.6322 -5.5651 22 14 16.4654 -1.5073 -4.2879 23 1 16.0383 -2.7480 -4.9831 24 1 17.7620 -1.0477 -4.8473 25 1 16.6220 -1.7818 -2.8369 26 6 7.0923 4.1294 -1.1616 27 1 7.6235 5.0800 -1.1131 28 6 6.3334 4.0346 -2.4866 29 6 6.1012 4.0377 0.0025 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.6886 1.8464 0.8899 34 1 1.6886 1.8464 -0.8900 35 1 3.8574 0.6434 -0.8891 36 1 3.8567 0.6438 0.8909 37 1 6.9152 1.4774 0.9437 38 1 5.7649 0.6212 -0.1151 39 1 8.0691 0.8214 -1.1165 40 1 6.8069 1.5943 -2.1058 41 1 8.5919 2.9370 -3.1611 42 1 9.5690 4.0672 -2.1935 43 1 10.5825 2.1228 -1.1454 44 1 10.6283 1.9696 -4.0888 45 1 11.6056 3.1001 -3.1218 46 1 13.2424 1.5240 -4.5705 47 1 15.9860 0.5415 -6.1976 48 1 5.6169 4.8531 -2.5544 49 1 7.0390 4.0999 -3.3149 50 1 5.8038 3.0832 -2.5348 51 1 5.3263 4.7950 -0.1169 52 1 6.6272 4.1984 0.9435 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001183678211.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:21:17 Heat of formation + Delta-G solvation = -150.408636 kcal Electronic energy + Delta-G solvation = -29881.937439 eV Core-core repulsion = 25687.027061 eV Total energy + Delta-G solvation = -4194.910377 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.53462 -40.15872 -39.45118 -38.61473 -36.70993 -35.84803 -34.62186 -33.26880 -32.91799 -32.28294 -29.50200 -28.24358 -27.48730 -27.07047 -25.55453 -24.44785 -24.05026 -22.82366 -21.14400 -20.73923 -19.91501 -19.28984 -18.52916 -17.74845 -17.38100 -17.19826 -16.90527 -16.52501 -16.46189 -16.29691 -16.12965 -15.80094 -15.59998 -15.37696 -15.17209 -15.06276 -14.59721 -14.26810 -14.11798 -14.05508 -13.84091 -13.56023 -13.42558 -13.13360 -13.07718 -12.88268 -12.75386 -12.64284 -12.43602 -12.40398 -12.33159 -12.14132 -12.11421 -11.98120 -11.60846 -11.49041 -11.32051 -11.26779 -10.81184 -10.69148 -10.31567 -9.99833 -9.61688 -9.24878 -8.45427 -5.94004 1.39183 1.42968 1.55478 1.55881 1.89014 2.07663 2.30300 2.82845 2.95659 3.22234 3.54379 3.60018 3.76533 3.79416 3.97131 4.00301 4.07265 4.13090 4.27038 4.32992 4.39356 4.45700 4.48279 4.50379 4.50775 4.53781 4.58050 4.66937 4.71486 4.76059 4.77207 4.79720 4.82286 4.84947 4.89850 4.94322 5.04613 5.08361 5.21353 5.24659 5.36808 5.42315 5.53704 5.66395 5.92089 6.13081 6.14095 6.37544 6.47632 6.61741 7.10367 7.14200 7.58424 8.13478 8.71954 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.018623 B = 0.001744 C = 0.001648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.182244 B =16052.393455 C =16982.917923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.411 6.411 3 C 0.079 3.921 4 C -0.136 4.136 5 C 0.519 3.481 6 O -0.585 6.585 7 N -0.602 5.602 8 C 0.104 3.896 9 C -0.121 4.121 10 C -0.072 4.072 11 H 0.075 0.925 12 C 0.067 3.933 13 N -0.676 5.676 14 C 0.066 3.934 15 C 0.439 3.561 16 O -0.621 6.621 17 N -0.575 5.575 18 C -0.334 4.334 19 H 0.080 0.920 20 C -0.013 4.013 21 N -0.921 5.921 22 Si 0.993 3.007 23 H -0.272 1.272 24 H -0.272 1.272 25 H -0.272 1.272 26 C -0.092 4.092 27 H 0.094 0.906 28 C -0.143 4.143 29 C 0.116 3.884 30 H 0.049 0.951 31 H 0.047 0.953 32 H 0.101 0.899 33 H 0.051 0.949 34 H 0.049 0.951 35 H 0.114 0.886 36 H 0.118 0.882 37 H 0.082 0.918 38 H 0.102 0.898 39 H 0.078 0.922 40 H 0.064 0.936 41 H 0.074 0.926 42 H 0.037 0.963 43 H 0.344 0.656 44 H 0.100 0.900 45 H 0.063 0.937 46 H 0.396 0.604 47 H 0.277 0.723 48 H 0.048 0.952 49 H 0.061 0.939 50 H 0.049 0.951 51 H 0.079 0.921 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.126 6.439 8.997 26.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.331 6.331 3 C 0.002 3.998 4 C -0.175 4.175 5 C 0.308 3.692 6 O -0.466 6.466 7 N -0.334 5.334 8 C -0.018 4.018 9 C -0.159 4.159 10 C -0.091 4.091 11 H 0.093 0.907 12 C -0.062 4.062 13 N -0.308 5.308 14 C -0.067 4.067 15 C 0.226 3.774 16 O -0.507 6.507 17 N -0.212 5.212 18 C -0.463 4.463 19 H 0.098 0.902 20 C -0.213 4.213 21 N -0.562 5.562 22 Si 0.816 3.184 23 H -0.197 1.197 24 H -0.196 1.196 25 H -0.197 1.197 26 C -0.111 4.111 27 H 0.112 0.888 28 C -0.200 4.200 29 C -0.006 4.006 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.120 0.880 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.133 0.867 36 H 0.137 0.863 37 H 0.100 0.900 38 H 0.120 0.880 39 H 0.097 0.903 40 H 0.082 0.918 41 H 0.092 0.908 42 H 0.055 0.945 43 H 0.162 0.838 44 H 0.118 0.882 45 H 0.081 0.919 46 H 0.229 0.771 47 H 0.086 0.914 48 H 0.067 0.933 49 H 0.080 0.920 50 H 0.068 0.932 51 H 0.097 0.903 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -24.655 5.814 9.164 26.938 hybrid contribution 1.184 0.758 -0.321 1.442 sum -23.471 6.572 8.843 25.928 Atomic orbital electron populations 1.22936 0.79254 1.04025 1.00799 1.87779 1.21642 1.28025 1.95628 1.22098 0.92542 0.84124 1.01013 1.21502 0.94715 0.94292 1.06991 1.20702 0.82100 0.91331 0.75043 1.90675 1.61395 1.42146 1.52404 1.48143 1.05087 1.08258 1.71903 1.21999 0.92652 0.87464 0.99653 1.21854 0.97808 0.98023 0.98240 1.21066 0.94771 0.94848 0.98413 0.90656 1.22105 0.92312 0.92053 0.99733 1.60065 1.14826 1.50995 1.04959 1.21506 0.92145 0.95626 0.97418 1.20896 0.84153 0.88215 0.84105 1.90485 1.77906 1.48588 1.33756 1.41949 1.22877 1.31300 1.25099 1.19678 1.04291 1.11635 1.10739 0.90240 1.26031 1.00089 1.00327 0.94840 1.69673 1.33898 1.38770 1.13843 0.84930 0.77192 0.77778 0.78460 1.19717 1.19633 1.19710 1.21442 0.95536 0.99213 0.94942 0.88813 1.21836 0.99949 1.01358 0.96905 1.21654 0.96172 0.84127 0.98696 0.93270 0.93439 0.88015 0.93029 0.93284 0.86748 0.86344 0.89974 0.87963 0.90347 0.91778 0.90752 0.94474 0.83778 0.88174 0.91901 0.77052 0.91359 0.93292 0.91993 0.93243 0.90288 0.90316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 113.37 1.25 1.55 16 2 O -0.41 -7.19 10.70 -148.98 -1.59 -8.79 16 3 C 0.08 1.35 5.23 71.98 0.38 1.72 16 4 C -0.14 -1.98 4.42 29.85 0.13 -1.84 16 5 C 0.52 10.00 7.70 87.66 0.67 10.67 16 6 O -0.59 -15.47 15.39 -3.02 -0.05 -15.52 16 7 N -0.60 -9.76 2.42 -818.99 -1.98 -11.75 16 8 C 0.10 1.40 6.34 86.36 0.55 1.95 16 9 C -0.12 -2.07 4.92 30.67 0.15 -1.92 16 10 C -0.07 -1.20 2.06 -10.76 -0.02 -1.22 16 11 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 12 C 0.07 1.35 4.60 86.30 0.40 1.74 16 13 N -0.68 -19.21 5.56 -517.93 -2.88 -22.09 16 14 C 0.07 2.14 6.17 85.56 0.53 2.67 16 15 C 0.44 20.33 7.82 87.66 0.69 21.02 16 16 O -0.62 -33.45 15.78 -3.06 -0.05 -33.49 16 17 N -0.57 -29.12 5.29 -306.98 -1.62 -30.74 16 18 C -0.33 -18.80 9.68 84.04 0.81 -17.98 16 19 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 20 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 21 N -0.92 -49.37 13.05 21.66 0.28 -49.09 16 22 Si 0.99 42.57 29.55 68.60 2.03 44.60 16 23 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 24 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 25 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 26 C -0.09 -1.35 2.73 -10.72 -0.03 -1.38 16 27 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 28 C -0.14 -2.34 8.38 71.98 0.60 -1.74 16 29 C 0.12 1.84 5.82 86.35 0.50 2.34 16 30 H 0.05 0.49 8.14 -2.39 -0.02 0.48 16 31 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.05 0.91 8.10 -2.39 -0.02 0.89 16 34 H 0.05 0.90 8.10 -2.39 -0.02 0.88 16 35 H 0.11 1.43 7.69 -2.39 -0.02 1.42 16 36 H 0.12 1.35 7.94 -2.38 -0.02 1.33 16 37 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.10 1.07 5.93 -2.39 -0.01 1.06 16 39 H 0.08 1.68 7.72 -2.39 -0.02 1.66 16 40 H 0.06 1.16 6.34 -2.38 -0.02 1.15 16 41 H 0.07 1.51 6.74 -2.39 -0.02 1.50 16 42 H 0.04 0.69 8.14 -2.39 -0.02 0.68 16 43 H 0.34 10.29 8.43 -89.69 -0.76 9.53 16 44 H 0.10 2.99 8.14 -2.39 -0.02 2.98 16 45 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 46 H 0.40 19.07 7.90 -92.71 -0.73 18.34 16 47 H 0.28 13.91 8.31 -92.71 -0.77 13.14 16 48 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 49 H 0.06 0.97 6.58 -2.39 -0.02 0.96 16 50 H 0.05 0.90 5.97 -2.39 -0.01 0.88 16 51 H 0.08 1.50 7.01 -2.39 -0.02 1.49 16 52 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -70.65 410.93 0.65 -70.00 By element: Atomic # 1 Polarization: 40.06 SS G_CDS: -0.56 Total: 39.50 kcal Atomic # 6 Polarization: 10.28 SS G_CDS: 7.07 Total: 17.35 kcal Atomic # 7 Polarization: -107.46 SS G_CDS: -6.20 Total: -113.66 kcal Atomic # 8 Polarization: -56.11 SS G_CDS: -1.69 Total: -57.80 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.60 kcal Total: -70.65 0.65 -70.00 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183678211.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.410 kcal (2) G-P(sol) polarization free energy of solvation -70.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds