Wall clock time and date at job start Wed Apr 1 2020 01:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.42900 * 113.99456 * 2 1 4 4 C 1.50706 * 109.46744 * 179.97438 * 3 2 1 5 5 O 1.21275 * 119.99745 * 359.97438 * 4 3 2 6 6 N 1.34780 * 119.99793 * 179.97438 * 4 3 2 7 7 C 1.46496 * 119.99674 * 179.97438 * 6 4 3 8 8 C 1.53001 * 109.46945 * 179.97438 * 7 6 4 9 9 C 1.50698 * 109.47317 * 179.97438 * 8 7 6 10 10 O 1.21287 * 120.00057 * 0.02562 * 9 8 7 11 11 N 1.34773 * 120.00372 * 179.97438 * 9 8 7 12 12 C 1.46931 * 120.62881 * 0.02562 * 11 9 8 13 13 C 1.53193 * 108.77779 * 233.63067 * 12 11 9 14 14 C 1.53038 * 109.31343 * 305.36678 * 13 12 11 15 15 H 1.09007 * 109.46104 * 301.36413 * 14 13 12 16 16 C 1.52993 * 109.46110 * 181.38791 * 14 13 12 17 17 N 1.46496 * 109.47551 * 64.96950 * 16 14 13 18 18 C 1.36934 * 120.00548 * 179.97438 * 17 16 14 19 19 H 1.08004 * 119.99288 * 0.02562 * 18 17 16 20 20 C 1.38805 * 120.00389 * 180.02562 * 18 17 16 21 21 N 1.31624 * 120.00257 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 119.99929 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.47174 * 270.00277 * 22 20 18 24 24 H 1.48501 * 109.47062 * 30.00228 * 22 20 18 25 25 H 1.48499 * 109.46981 * 150.00382 * 22 20 18 26 26 C 1.53045 * 109.52578 * 61.37129 * 14 13 12 27 27 H 1.09004 * 109.49507 * 178.67910 * 26 14 13 28 28 C 1.52995 * 109.49880 * 58.58227 * 26 14 13 29 29 C 1.46921 * 120.63509 * 180.02562 * 11 9 8 30 30 H 1.09001 * 109.47334 * 60.00431 * 1 2 3 31 31 H 1.09006 * 109.46746 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47118 * 300.00070 * 1 2 3 33 33 H 1.08994 * 109.47559 * 59.99703 * 3 2 1 34 34 H 1.09003 * 109.47238 * 299.99696 * 3 2 1 35 35 H 0.96997 * 119.99837 * 0.02562 * 6 4 3 36 36 H 1.09001 * 109.47429 * 60.00280 * 7 6 4 37 37 H 1.08998 * 109.47056 * 299.99639 * 7 6 4 38 38 H 1.09007 * 109.47064 * 59.99677 * 8 7 6 39 39 H 1.09003 * 109.47360 * 300.00085 * 8 7 6 40 40 H 1.08999 * 109.58281 * 113.84401 * 12 11 9 41 41 H 1.09003 * 109.70381 * 353.48847 * 12 11 9 42 42 H 1.08996 * 109.49439 * 185.41533 * 13 12 11 43 43 H 1.08997 * 109.52104 * 65.33341 * 13 12 11 44 44 H 1.09004 * 109.46862 * 304.97149 * 16 14 13 45 45 H 1.09004 * 109.46998 * 184.97627 * 16 14 13 46 46 H 0.96999 * 119.99694 * 0.02562 * 17 16 14 47 47 H 0.97001 * 119.99885 * 179.97438 * 21 20 18 48 48 H 1.09000 * 109.47061 * 59.99701 * 28 26 14 49 49 H 1.08994 * 109.47404 * 180.02562 * 28 26 14 50 50 H 1.09007 * 109.47047 * 300.00172 * 28 26 14 51 51 H 1.09001 * 109.58447 * 246.15761 * 29 11 9 52 52 H 1.09001 * 109.58642 * 6.43237 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5126 1.1866 0.0006 5 8 4.0341 0.0917 0.0015 6 7 4.2764 2.2970 0.0002 7 6 5.7368 2.1813 0.0014 8 6 6.3591 3.5791 0.0000 9 6 7.8614 3.4602 0.0018 10 8 8.3831 2.3653 0.0036 11 7 8.6253 4.5705 0.0005 12 6 8.0080 5.9039 -0.0022 13 6 8.5821 6.7107 -1.1710 14 6 10.1093 6.7254 -1.0741 15 1 10.4086 7.1622 -0.1213 16 6 10.6848 7.5593 -2.2205 17 7 10.2724 8.9562 -2.0632 18 6 10.6713 9.8950 -2.9768 19 1 11.2896 9.6054 -3.8136 20 6 10.2809 11.2186 -2.8274 21 7 10.6639 12.1209 -3.7059 22 14 9.2108 11.7192 -1.3804 23 1 7.7797 11.5992 -1.7582 24 1 9.4938 10.8306 -0.2247 25 1 9.5083 13.1256 -1.0080 26 6 10.6416 5.2935 -1.1680 27 1 11.7306 5.3065 -1.1225 28 6 10.1925 4.6674 -2.4897 29 6 10.0911 4.4708 0.0017 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.6885 1.8464 0.8899 34 1 1.6886 1.8464 -0.8900 35 1 3.8592 3.1726 -0.0001 36 1 6.0592 1.6397 -0.8879 37 1 6.0578 1.6412 0.8921 38 1 6.0367 4.1212 0.8891 39 1 6.0381 4.1188 -0.8909 40 1 8.2305 6.4114 0.9364 41 1 6.9284 5.8088 -0.1192 42 1 8.2050 7.7324 -1.1277 43 1 8.2817 6.2516 -2.1129 44 1 10.3136 7.1757 -3.1708 45 1 11.7730 7.4976 -2.2039 46 1 9.7174 9.2162 -1.3114 47 1 10.3908 13.0458 -3.6017 48 1 10.5822 5.2549 -3.3210 49 1 10.5714 3.6475 -2.5559 50 1 9.1034 4.6535 -2.5337 51 1 10.4831 4.8617 0.9406 52 1 10.3865 3.4276 -0.1113 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184525277.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:21:20 Heat of formation + Delta-G solvation = -106.837759 kcal Electronic energy + Delta-G solvation = -30016.125017 eV Core-core repulsion = 25823.104015 eV Total energy + Delta-G solvation = -4193.021003 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.72197 -40.07866 -38.41266 -37.86541 -35.52325 -35.18613 -33.59439 -32.11937 -31.46737 -30.75334 -29.22865 -27.37570 -27.08794 -26.25121 -24.10508 -23.42739 -22.99249 -21.34155 -21.16225 -19.94486 -18.54978 -17.87311 -17.71778 -17.35064 -16.95435 -16.86325 -16.25289 -15.94022 -15.50031 -15.25944 -15.11368 -14.82471 -14.55558 -14.34846 -14.11625 -13.89008 -13.59846 -13.41770 -13.40156 -13.07352 -12.77967 -12.73143 -12.57216 -12.42683 -12.18590 -11.97484 -11.87147 -11.69671 -11.49242 -11.43854 -11.11226 -10.88382 -10.55868 -10.39140 -10.32969 -10.23965 -10.21943 -10.13986 -9.89511 -9.62709 -9.50988 -8.93449 -8.75142 -7.26602 -5.80966 -3.16381 2.21867 2.26325 2.39523 2.85124 3.30316 3.31424 3.39369 3.57589 4.14966 4.32919 4.37509 4.53470 4.55135 4.58195 4.62194 4.64254 4.77282 4.80873 4.85209 4.85817 4.94778 4.96827 5.09870 5.17788 5.26637 5.38953 5.47474 5.49903 5.55947 5.61640 5.65474 5.67946 5.70934 5.78814 5.87439 5.93437 6.06182 6.11466 6.23816 6.25308 6.31426 6.43962 6.46957 6.65511 6.77796 7.01635 7.20208 7.80817 7.94724 7.95766 8.38064 9.17238 9.89355 10.09264 11.37603 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.014292 B = 0.001993 C = 0.001820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1958.696485 B =14045.760641 C =15385.022414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.367 6.367 3 C 0.043 3.957 4 C 0.512 3.488 5 O -0.514 6.514 6 N -0.732 5.732 7 C 0.137 3.863 8 C -0.154 4.154 9 C 0.520 3.480 10 O -0.541 6.541 11 N -0.604 5.604 12 C 0.104 3.896 13 C -0.131 4.131 14 C -0.093 4.093 15 H 0.071 0.929 16 C 0.162 3.838 17 N -0.755 5.755 18 C -0.243 4.243 19 H 0.089 0.911 20 C 0.003 3.997 21 N -0.934 5.934 22 Si 0.884 3.116 23 H -0.284 1.284 24 H -0.278 1.278 25 H -0.291 1.291 26 C -0.098 4.098 27 H 0.084 0.916 28 C -0.145 4.145 29 C 0.116 3.884 30 H 0.045 0.955 31 H 0.092 0.908 32 H 0.044 0.956 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.401 0.599 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.100 0.900 39 H 0.102 0.898 40 H 0.071 0.929 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.073 0.927 44 H 0.030 0.970 45 H 0.026 0.974 46 H 0.359 0.641 47 H 0.259 0.741 48 H 0.063 0.937 49 H 0.049 0.951 50 H 0.054 0.946 51 H 0.067 0.933 52 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.380 -18.607 10.571 27.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.285 6.285 3 C -0.037 4.037 4 C 0.297 3.703 5 O -0.387 6.387 6 N -0.387 5.387 7 C 0.013 3.987 8 C -0.195 4.195 9 C 0.307 3.693 10 O -0.418 6.418 11 N -0.338 5.338 12 C -0.019 4.019 13 C -0.169 4.169 14 C -0.112 4.112 15 H 0.089 0.911 16 C 0.035 3.965 17 N -0.401 5.401 18 C -0.373 4.373 19 H 0.107 0.893 20 C -0.193 4.193 21 N -0.582 5.582 22 Si 0.715 3.285 23 H -0.211 1.211 24 H -0.204 1.204 25 H -0.218 1.218 26 C -0.117 4.117 27 H 0.102 0.898 28 C -0.203 4.203 29 C -0.006 4.006 30 H 0.063 0.937 31 H 0.110 0.890 32 H 0.063 0.937 33 H 0.099 0.901 34 H 0.100 0.900 35 H 0.235 0.765 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.119 0.881 39 H 0.121 0.879 40 H 0.089 0.911 41 H 0.101 0.899 42 H 0.099 0.901 43 H 0.092 0.908 44 H 0.048 0.952 45 H 0.044 0.956 46 H 0.192 0.808 47 H 0.069 0.931 48 H 0.082 0.918 49 H 0.069 0.931 50 H 0.073 0.927 51 H 0.085 0.915 52 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -16.490 -20.086 10.371 27.981 hybrid contribution -1.175 1.583 0.965 2.195 sum -17.665 -18.502 11.335 27.980 Atomic orbital electron populations 1.22861 0.80156 1.03488 1.00204 1.88030 1.19951 1.25067 1.95434 1.22234 0.91462 0.87204 1.02767 1.20250 0.88702 0.84538 0.76840 1.90773 1.74558 1.26429 1.46976 1.45852 1.07197 1.08811 1.76821 1.21042 0.77734 0.95602 1.04297 1.21850 0.93411 0.99021 1.05185 1.20222 0.88812 0.84021 0.76232 1.90736 1.74841 1.26174 1.50045 1.48081 1.07054 1.05974 1.72656 1.21881 0.97670 0.82484 0.99841 1.22000 0.96197 1.00634 0.98048 1.21361 0.94745 0.94564 1.00510 0.91072 1.20699 0.96682 0.84205 0.94913 1.42726 1.62855 1.04105 1.30415 1.19065 1.26515 0.87878 1.03835 0.89297 1.24681 1.00588 0.95810 0.98181 1.69704 1.49948 1.01911 1.36667 0.86551 0.80945 0.77783 0.83252 1.21110 1.20400 1.21758 1.21467 1.00555 0.94611 0.95094 0.89798 1.21862 1.01450 1.00020 0.96919 1.21713 0.78654 1.02006 0.98223 0.93674 0.88974 0.93727 0.90121 0.90048 0.76531 0.90303 0.90379 0.88144 0.87941 0.91093 0.89922 0.90084 0.90840 0.95193 0.95610 0.80780 0.93073 0.91778 0.93146 0.92710 0.91519 0.88955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 11.01 101.05 1.11 1.26 16 2 O -0.37 -3.40 10.24 -55.14 -0.56 -3.96 16 3 C 0.04 0.27 6.42 36.01 0.23 0.50 16 4 C 0.51 4.91 7.91 -10.98 -0.09 4.83 16 5 O -0.51 -7.75 16.50 -14.35 -0.24 -7.98 16 6 N -0.73 -4.85 5.56 -60.29 -0.33 -5.19 16 7 C 0.14 1.20 4.96 -4.04 -0.02 1.18 16 8 C -0.15 -1.04 4.16 -27.88 -0.12 -1.16 16 9 C 0.52 5.55 7.70 -10.99 -0.08 5.47 16 10 O -0.54 -7.86 15.39 5.55 0.09 -7.77 16 11 N -0.60 -6.06 2.41 -172.74 -0.42 -6.47 16 12 C 0.10 0.90 6.34 -3.71 -0.02 0.88 16 13 C -0.13 -1.53 4.90 -26.61 -0.13 -1.66 16 14 C -0.09 -1.23 1.96 -90.58 -0.18 -1.41 16 15 H 0.07 0.97 8.14 -51.92 -0.42 0.54 16 16 C 0.16 2.89 5.19 -4.05 -0.02 2.87 16 17 N -0.76 -16.89 5.12 -59.91 -0.31 -17.20 16 18 C -0.24 -6.69 10.47 -15.06 -0.16 -6.84 16 19 H 0.09 2.65 8.06 -52.48 -0.42 2.22 16 20 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 21 N -0.93 -28.83 13.97 55.49 0.78 -28.06 16 22 Si 0.88 21.19 27.74 -169.99 -4.71 16.47 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.28 -6.17 6.52 56.52 0.37 -5.80 16 25 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 26 C -0.10 -1.12 2.72 -90.48 -0.25 -1.36 16 27 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 28 C -0.15 -1.72 8.38 37.15 0.31 -1.41 16 29 C 0.12 1.24 5.83 -3.69 -0.02 1.22 16 30 H 0.04 0.16 8.14 -51.93 -0.42 -0.27 16 31 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.04 0.15 8.14 -51.93 -0.42 -0.27 16 33 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.40 1.13 8.47 -40.82 -0.35 0.79 16 36 H 0.08 0.87 8.10 -51.93 -0.42 0.45 16 37 H 0.08 0.84 8.10 -51.93 -0.42 0.42 16 38 H 0.10 0.45 7.94 -51.92 -0.41 0.04 16 39 H 0.10 0.52 7.70 -51.93 -0.40 0.12 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.08 0.50 5.95 -51.93 -0.31 0.19 16 42 H 0.08 1.06 7.15 -51.93 -0.37 0.69 16 43 H 0.07 0.88 6.34 -51.93 -0.33 0.56 16 44 H 0.03 0.55 6.74 -51.93 -0.35 0.20 16 45 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.36 7.72 4.71 -40.82 -0.19 7.53 16 47 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 48 H 0.06 0.81 6.58 -51.93 -0.34 0.46 16 49 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 50 H 0.05 0.66 5.97 -51.92 -0.31 0.35 16 51 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 52 H 0.09 1.09 7.00 -51.93 -0.36 0.72 16 LS Contribution 407.78 15.07 6.15 6.15 Total: -1.00 -37.75 407.78 -7.90 -45.65 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -8.81 Total: 4.01 kcal Atomic # 6 Polarization: 3.89 SS G_CDS: 0.47 Total: 4.36 kcal Atomic # 7 Polarization: -56.64 SS G_CDS: -0.28 Total: -56.92 kcal Atomic # 8 Polarization: -19.00 SS G_CDS: -0.72 Total: -19.71 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.71 Total: 16.47 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -37.75 -7.90 -45.65 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184525277.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.190 kcal (2) G-P(sol) polarization free energy of solvation -37.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds