Wall clock time and date at job start Wed Apr 1 2020 01:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.42900 * 113.99456 * 2 1 4 4 C 1.50706 * 109.46744 * 179.97438 * 3 2 1 5 5 O 1.21275 * 119.99745 * 359.97438 * 4 3 2 6 6 N 1.34780 * 119.99793 * 179.97438 * 4 3 2 7 7 C 1.46496 * 119.99674 * 179.97438 * 6 4 3 8 8 C 1.53001 * 109.46945 * 179.97438 * 7 6 4 9 9 C 1.50698 * 109.47317 * 179.97438 * 8 7 6 10 10 O 1.21287 * 120.00057 * 0.02562 * 9 8 7 11 11 N 1.34773 * 120.00372 * 179.97438 * 9 8 7 12 12 C 1.46931 * 120.62881 * 0.02562 * 11 9 8 13 13 C 1.53193 * 108.77779 * 233.63067 * 12 11 9 14 14 C 1.53038 * 109.31343 * 305.36678 * 13 12 11 15 15 H 1.09007 * 109.46104 * 301.36413 * 14 13 12 16 16 C 1.52993 * 109.46110 * 181.38791 * 14 13 12 17 17 N 1.46496 * 109.47551 * 64.96950 * 16 14 13 18 18 C 1.36934 * 120.00548 * 179.97438 * 17 16 14 19 19 H 1.08004 * 119.99288 * 0.02562 * 18 17 16 20 20 C 1.38805 * 120.00389 * 180.02562 * 18 17 16 21 21 N 1.31624 * 120.00257 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 119.99929 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.47174 * 270.00277 * 22 20 18 24 24 H 1.48501 * 109.47062 * 30.00228 * 22 20 18 25 25 H 1.48499 * 109.46981 * 150.00382 * 22 20 18 26 26 C 1.53045 * 109.52578 * 61.37129 * 14 13 12 27 27 H 1.09004 * 109.49507 * 178.67910 * 26 14 13 28 28 C 1.52995 * 109.49880 * 58.58227 * 26 14 13 29 29 C 1.46921 * 120.63509 * 180.02562 * 11 9 8 30 30 H 1.09001 * 109.47334 * 60.00431 * 1 2 3 31 31 H 1.09006 * 109.46746 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47118 * 300.00070 * 1 2 3 33 33 H 1.08994 * 109.47559 * 59.99703 * 3 2 1 34 34 H 1.09003 * 109.47238 * 299.99696 * 3 2 1 35 35 H 0.96997 * 119.99837 * 0.02562 * 6 4 3 36 36 H 1.09001 * 109.47429 * 60.00280 * 7 6 4 37 37 H 1.08998 * 109.47056 * 299.99639 * 7 6 4 38 38 H 1.09007 * 109.47064 * 59.99677 * 8 7 6 39 39 H 1.09003 * 109.47360 * 300.00085 * 8 7 6 40 40 H 1.08999 * 109.58281 * 113.84401 * 12 11 9 41 41 H 1.09003 * 109.70381 * 353.48847 * 12 11 9 42 42 H 1.08996 * 109.49439 * 185.41533 * 13 12 11 43 43 H 1.08997 * 109.52104 * 65.33341 * 13 12 11 44 44 H 1.09004 * 109.46862 * 304.97149 * 16 14 13 45 45 H 1.09004 * 109.46998 * 184.97627 * 16 14 13 46 46 H 0.96999 * 119.99694 * 0.02562 * 17 16 14 47 47 H 0.97001 * 119.99885 * 179.97438 * 21 20 18 48 48 H 1.09000 * 109.47061 * 59.99701 * 28 26 14 49 49 H 1.08994 * 109.47404 * 180.02562 * 28 26 14 50 50 H 1.09007 * 109.47047 * 300.00172 * 28 26 14 51 51 H 1.09001 * 109.58447 * 246.15761 * 29 11 9 52 52 H 1.09001 * 109.58642 * 6.43237 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5126 1.1866 0.0006 5 8 4.0341 0.0917 0.0015 6 7 4.2764 2.2970 0.0002 7 6 5.7368 2.1813 0.0014 8 6 6.3591 3.5791 0.0000 9 6 7.8614 3.4602 0.0018 10 8 8.3831 2.3653 0.0036 11 7 8.6253 4.5705 0.0005 12 6 8.0080 5.9039 -0.0022 13 6 8.5821 6.7107 -1.1710 14 6 10.1093 6.7254 -1.0741 15 1 10.4086 7.1622 -0.1213 16 6 10.6848 7.5593 -2.2205 17 7 10.2724 8.9562 -2.0632 18 6 10.6713 9.8950 -2.9768 19 1 11.2896 9.6054 -3.8136 20 6 10.2809 11.2186 -2.8274 21 7 10.6639 12.1209 -3.7059 22 14 9.2108 11.7192 -1.3804 23 1 7.7797 11.5992 -1.7582 24 1 9.4938 10.8306 -0.2247 25 1 9.5083 13.1256 -1.0080 26 6 10.6416 5.2935 -1.1680 27 1 11.7306 5.3065 -1.1225 28 6 10.1925 4.6674 -2.4897 29 6 10.0911 4.4708 0.0017 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.6885 1.8464 0.8899 34 1 1.6886 1.8464 -0.8900 35 1 3.8592 3.1726 -0.0001 36 1 6.0592 1.6397 -0.8879 37 1 6.0578 1.6412 0.8921 38 1 6.0367 4.1212 0.8891 39 1 6.0381 4.1188 -0.8909 40 1 8.2305 6.4114 0.9364 41 1 6.9284 5.8088 -0.1192 42 1 8.2050 7.7324 -1.1277 43 1 8.2817 6.2516 -2.1129 44 1 10.3136 7.1757 -3.1708 45 1 11.7730 7.4976 -2.2039 46 1 9.7174 9.2162 -1.3114 47 1 10.3908 13.0458 -3.6017 48 1 10.5822 5.2549 -3.3210 49 1 10.5714 3.6475 -2.5559 50 1 9.1034 4.6535 -2.5337 51 1 10.4831 4.8617 0.9406 52 1 10.3865 3.4276 -0.1113 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184525277.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:21:20 Heat of formation + Delta-G solvation = -135.451610 kcal Electronic energy + Delta-G solvation = -30017.365807 eV Core-core repulsion = 25823.104015 eV Total energy + Delta-G solvation = -4194.261792 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.55807 -40.80543 -39.38071 -38.42812 -36.69770 -36.25600 -34.86207 -33.50206 -32.37021 -32.08903 -29.73261 -28.71985 -27.91851 -26.76929 -25.36073 -24.34291 -24.11684 -22.72647 -21.89049 -20.83749 -19.92071 -19.09451 -18.42721 -18.27404 -17.56512 -17.41480 -16.93632 -16.81957 -16.58426 -16.20176 -16.05007 -15.91225 -15.64338 -15.32800 -15.15485 -15.04246 -14.75409 -14.46486 -14.30323 -14.05197 -13.94859 -13.74491 -13.53238 -13.23146 -13.15068 -12.99701 -12.79813 -12.66985 -12.49234 -12.37005 -12.33185 -12.16181 -12.00799 -11.83326 -11.55857 -11.37485 -11.26267 -11.03044 -10.91499 -10.75574 -10.73967 -10.20939 -9.59791 -9.25341 -7.99819 -5.33638 1.39482 1.45533 1.53124 1.53141 1.60808 1.67111 2.15836 2.51979 3.12772 3.31439 3.50529 3.57749 3.68074 3.79616 3.82560 3.89453 4.04727 4.06842 4.14038 4.22398 4.28349 4.30302 4.38605 4.48759 4.51355 4.54349 4.59288 4.65610 4.75720 4.77376 4.82209 4.84725 4.88757 4.89016 4.92033 5.00632 5.07394 5.17815 5.20510 5.24072 5.30446 5.33332 5.54674 5.63993 5.78354 6.05124 6.23642 6.41965 6.53959 7.11498 7.15360 7.22025 7.86934 8.08442 9.21948 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.014292 B = 0.001993 C = 0.001820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1958.696485 B =14045.760641 C =15385.022414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.412 6.412 3 C 0.046 3.954 4 C 0.504 3.496 5 O -0.582 6.582 6 N -0.709 5.709 7 C 0.142 3.858 8 C -0.141 4.141 9 C 0.514 3.486 10 O -0.588 6.588 11 N -0.602 5.602 12 C 0.108 3.892 13 C -0.130 4.130 14 C -0.083 4.083 15 H 0.077 0.923 16 C 0.160 3.840 17 N -0.753 5.753 18 C -0.236 4.236 19 H 0.048 0.952 20 C -0.069 4.069 21 N -0.987 5.987 22 Si 0.960 3.040 23 H -0.271 1.271 24 H -0.245 1.245 25 H -0.301 1.301 26 C -0.091 4.091 27 H 0.085 0.915 28 C -0.141 4.141 29 C 0.119 3.881 30 H 0.060 0.940 31 H 0.090 0.910 32 H 0.061 0.939 33 H 0.115 0.885 34 H 0.113 0.887 35 H 0.424 0.576 36 H 0.048 0.952 37 H 0.052 0.948 38 H 0.138 0.862 39 H 0.131 0.869 40 H 0.087 0.913 41 H 0.119 0.881 42 H 0.073 0.927 43 H 0.068 0.932 44 H 0.023 0.977 45 H 0.014 0.986 46 H 0.368 0.632 47 H 0.257 0.743 48 H 0.050 0.950 49 H 0.050 0.950 50 H 0.055 0.945 51 H 0.081 0.919 52 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.469 -17.785 13.100 30.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.331 6.331 3 C -0.033 4.033 4 C 0.291 3.709 5 O -0.460 6.460 6 N -0.365 5.365 7 C 0.017 3.983 8 C -0.181 4.181 9 C 0.303 3.697 10 O -0.469 6.469 11 N -0.335 5.335 12 C -0.014 4.014 13 C -0.169 4.169 14 C -0.102 4.102 15 H 0.095 0.905 16 C 0.034 3.966 17 N -0.399 5.399 18 C -0.368 4.368 19 H 0.066 0.934 20 C -0.260 4.260 21 N -0.638 5.638 22 Si 0.786 3.214 23 H -0.197 1.197 24 H -0.169 1.169 25 H -0.228 1.228 26 C -0.110 4.110 27 H 0.103 0.897 28 C -0.198 4.198 29 C -0.003 4.003 30 H 0.079 0.921 31 H 0.109 0.891 32 H 0.080 0.920 33 H 0.133 0.867 34 H 0.130 0.870 35 H 0.263 0.737 36 H 0.066 0.934 37 H 0.071 0.929 38 H 0.155 0.845 39 H 0.148 0.852 40 H 0.105 0.895 41 H 0.137 0.863 42 H 0.092 0.908 43 H 0.086 0.914 44 H 0.041 0.959 45 H 0.032 0.968 46 H 0.202 0.798 47 H 0.066 0.934 48 H 0.069 0.931 49 H 0.069 0.931 50 H 0.074 0.926 51 H 0.099 0.901 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -19.610 -19.241 12.918 30.358 hybrid contribution -0.112 1.292 0.056 1.298 sum -19.722 -17.949 12.974 29.656 Atomic orbital electron populations 1.23028 0.78211 1.04063 1.01770 1.87972 1.22211 1.27120 1.95838 1.22414 0.88462 0.86716 1.05748 1.21075 0.90495 0.83989 0.75369 1.90743 1.75965 1.29045 1.50294 1.45625 1.06162 1.09475 1.75206 1.20789 0.79079 0.96710 1.01709 1.21831 0.90115 0.97925 1.08190 1.20896 0.90419 0.83291 0.75073 1.90729 1.75975 1.28016 1.52147 1.48149 1.06671 1.06603 1.72038 1.22016 0.99448 0.80967 0.98974 1.21971 0.94609 1.00828 0.99446 1.21251 0.96170 0.94373 0.98369 0.90485 1.20833 0.96196 0.82731 0.96857 1.42652 1.62779 1.04904 1.29565 1.19016 1.25139 0.89128 1.03472 0.93357 1.25611 1.02825 0.95688 1.01846 1.69916 1.52169 1.02249 1.39459 0.85335 0.78983 0.77065 0.79967 1.19680 1.16923 1.22797 1.21393 1.00737 0.93628 0.95267 0.89653 1.21811 1.01391 0.99839 0.96809 1.21610 0.79555 1.00971 0.98210 0.92133 0.89111 0.92003 0.86746 0.86953 0.73734 0.93354 0.92918 0.84455 0.85154 0.89516 0.86258 0.90837 0.91379 0.95921 0.96795 0.79765 0.93422 0.93092 0.93116 0.92626 0.90108 0.90328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 11.01 113.37 1.25 1.45 16 2 O -0.41 -7.19 10.24 -129.94 -1.33 -8.52 16 3 C 0.05 0.45 6.42 71.24 0.46 0.91 16 4 C 0.50 9.15 7.91 87.66 0.69 9.84 16 5 O -0.58 -18.25 16.50 16.02 0.26 -17.98 16 6 N -0.71 -7.70 5.56 -463.06 -2.57 -10.27 16 7 C 0.14 2.34 4.96 86.38 0.43 2.77 16 8 C -0.14 -1.36 4.16 29.85 0.12 -1.24 16 9 C 0.51 9.81 7.70 87.66 0.67 10.48 16 10 O -0.59 -16.99 15.39 -3.05 -0.05 -17.03 16 11 N -0.60 -10.18 2.41 -818.80 -1.97 -12.15 16 12 C 0.11 1.34 6.34 86.36 0.55 1.88 16 13 C -0.13 -2.60 4.90 30.67 0.15 -2.45 16 14 C -0.08 -2.01 1.96 -10.77 -0.02 -2.03 16 15 H 0.08 1.83 8.14 -2.38 -0.02 1.81 16 16 C 0.16 5.61 5.19 86.38 0.45 6.06 16 17 N -0.75 -32.82 5.12 -343.47 -1.76 -34.58 16 18 C -0.24 -13.19 10.47 84.03 0.88 -12.31 16 19 H 0.05 3.02 8.06 -2.91 -0.02 2.99 16 20 C -0.07 -3.94 5.50 84.86 0.47 -3.47 16 21 N -0.99 -62.42 13.97 21.65 0.30 -62.12 16 22 Si 0.96 42.71 27.74 68.60 1.90 44.62 16 23 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 24 H -0.25 -9.47 6.52 99.48 0.65 -8.82 16 25 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 26 C -0.09 -1.94 2.72 -10.70 -0.03 -1.97 16 27 H 0.09 1.81 8.14 -2.38 -0.02 1.79 16 28 C -0.14 -3.26 8.38 71.98 0.60 -2.66 16 29 C 0.12 2.31 5.83 86.38 0.50 2.82 16 30 H 0.06 0.27 8.14 -2.39 -0.02 0.25 16 31 H 0.09 0.68 8.14 -2.38 -0.02 0.66 16 32 H 0.06 0.25 8.14 -2.39 -0.02 0.23 16 33 H 0.11 0.34 8.14 -2.39 -0.02 0.32 16 34 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 35 H 0.42 0.52 8.47 -92.71 -0.79 -0.27 16 36 H 0.05 1.10 8.10 -2.39 -0.02 1.08 16 37 H 0.05 1.15 8.10 -2.39 -0.02 1.13 16 38 H 0.14 0.41 7.94 -2.38 -0.02 0.39 16 39 H 0.13 0.63 7.70 -2.39 -0.02 0.61 16 40 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.12 0.66 5.95 -2.39 -0.01 0.64 16 42 H 0.07 1.63 7.15 -2.39 -0.02 1.61 16 43 H 0.07 1.44 6.34 -2.39 -0.02 1.43 16 44 H 0.02 0.84 6.74 -2.38 -0.02 0.82 16 45 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 46 H 0.37 14.73 4.71 -92.71 -0.44 14.29 16 47 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 48 H 0.05 1.29 6.58 -2.39 -0.02 1.27 16 49 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 50 H 0.05 1.26 5.97 -2.38 -0.01 1.25 16 51 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 52 H 0.08 1.79 7.00 -2.39 -0.02 1.78 16 Total: -1.00 -89.23 407.78 1.61 -87.62 By element: Atomic # 1 Polarization: 20.69 SS G_CDS: -0.35 Total: 20.33 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: 7.18 Total: 10.08 kcal Atomic # 7 Polarization: -113.12 SS G_CDS: -6.00 Total: -119.12 kcal Atomic # 8 Polarization: -42.42 SS G_CDS: -1.11 Total: -43.54 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 1.90 Total: 44.62 kcal Total: -89.23 1.61 -87.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184525277.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.833 kcal (2) G-P(sol) polarization free energy of solvation -89.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds