Wall clock time and date at job start Wed Apr 1 2020 01:21:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42897 * 114.00450 * 2 1 4 4 C 1.50699 * 109.47272 * 179.97438 * 3 2 1 5 5 O 1.21277 * 120.00104 * 0.02562 * 4 3 2 6 6 N 1.34775 * 119.99990 * 180.02562 * 4 3 2 7 7 C 1.46496 * 120.00092 * 180.02562 * 6 4 3 8 8 C 1.53004 * 109.47329 * 179.97438 * 7 6 4 9 9 C 1.50696 * 109.47015 * 180.02562 * 8 7 6 10 10 O 1.21277 * 120.00316 * 359.97438 * 9 8 7 11 11 N 1.34775 * 119.99778 * 180.02562 * 9 8 7 12 12 C 1.46924 * 120.63263 * 359.97438 * 11 9 8 13 13 C 1.53191 * 108.77817 * 126.39226 * 12 11 9 14 14 C 1.53042 * 109.31021 * 54.63576 * 13 12 11 15 15 H 1.08999 * 109.45763 * 58.66186 * 14 13 12 16 16 C 1.53004 * 109.46094 * 178.61558 * 14 13 12 17 17 N 1.46499 * 109.47294 * 295.07434 * 16 14 13 18 18 C 1.36938 * 120.00288 * 180.02562 * 17 16 14 19 19 H 1.07999 * 119.99678 * 359.97438 * 18 17 16 20 20 C 1.38809 * 120.00149 * 179.97438 * 18 17 16 21 21 N 1.31624 * 119.99981 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00166 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47109 * 359.97438 * 22 20 18 24 24 H 1.48506 * 109.47539 * 119.99698 * 22 20 18 25 25 H 1.48502 * 109.47393 * 239.99788 * 22 20 18 26 26 C 1.53035 * 109.54021 * 298.63480 * 14 13 12 27 27 H 1.09002 * 109.53064 * 301.39966 * 26 14 13 28 28 C 1.52998 * 109.50087 * 181.31694 * 26 14 13 29 29 C 1.46929 * 120.63328 * 179.97438 * 11 9 8 30 30 H 1.08997 * 109.46579 * 59.99690 * 1 2 3 31 31 H 1.08998 * 109.47212 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47028 * 300.00490 * 1 2 3 33 33 H 1.09007 * 109.46825 * 59.99752 * 3 2 1 34 34 H 1.09003 * 109.47050 * 300.00108 * 3 2 1 35 35 H 0.96998 * 120.00024 * 359.97438 * 6 4 3 36 36 H 1.09007 * 109.47076 * 60.00023 * 7 6 4 37 37 H 1.09003 * 109.47392 * 300.00017 * 7 6 4 38 38 H 1.08994 * 109.46931 * 60.00149 * 8 7 6 39 39 H 1.09001 * 109.47089 * 299.99832 * 8 7 6 40 40 H 1.08999 * 109.58511 * 6.60547 * 12 11 9 41 41 H 1.09005 * 109.70744 * 246.25091 * 12 11 9 42 42 H 1.09006 * 109.49784 * 294.68835 * 13 12 11 43 43 H 1.09001 * 109.50459 * 174.58802 * 13 12 11 44 44 H 1.09005 * 109.46981 * 55.06807 * 16 14 13 45 45 H 1.08993 * 109.47289 * 175.06685 * 16 14 13 46 46 H 0.97004 * 119.99457 * 359.97438 * 17 16 14 47 47 H 0.96997 * 119.99862 * 179.97438 * 21 20 18 48 48 H 1.09004 * 109.47145 * 300.16145 * 28 26 14 49 49 H 1.09002 * 109.46977 * 60.16060 * 28 26 14 50 50 H 1.09000 * 109.47198 * 180.16667 * 28 26 14 51 51 H 1.08998 * 109.59209 * 113.81639 * 29 11 9 52 52 H 1.09003 * 109.58217 * 353.38921 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1863 0.0006 5 8 4.0342 0.0914 0.0006 6 7 4.2766 2.2966 0.0013 7 6 5.7370 2.1809 0.0013 8 6 6.3594 3.5786 0.0014 9 6 7.8617 3.4595 0.0009 10 8 8.3832 2.3646 0.0009 11 7 8.6256 4.5698 0.0014 12 6 8.0085 5.9031 0.0020 13 6 8.5823 6.7116 1.1698 14 6 10.1096 6.7259 1.0734 15 1 10.4092 7.1618 0.1203 16 6 10.6849 7.5614 2.2188 17 7 10.2718 8.9579 2.0601 18 6 10.6703 9.8979 2.9727 19 1 11.2888 9.6096 3.8097 20 6 10.2793 11.2212 2.8219 21 7 9.5259 11.5726 1.8014 22 14 10.8223 12.5033 4.0671 23 1 11.6561 11.8565 5.1120 24 1 11.6153 13.5550 3.3812 25 1 9.6269 13.1176 4.6986 26 6 10.6420 5.2943 1.1692 27 1 10.3224 4.8490 2.1114 28 6 12.1706 5.3126 1.1057 29 6 10.0915 4.4699 0.0014 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.6887 1.8463 0.8900 34 1 1.6887 1.8463 -0.8900 35 1 3.8595 3.1723 0.0009 36 1 6.0587 1.6404 -0.8890 37 1 6.0586 1.6395 0.8911 38 1 6.0378 4.1194 0.8914 39 1 6.0379 4.1196 -0.8885 40 1 6.9293 5.8062 0.1200 41 1 8.2292 6.4107 -0.9371 42 1 8.2816 6.2533 2.1121 43 1 8.2054 7.7333 1.1251 44 1 10.3139 7.1787 3.1697 45 1 11.7730 7.5002 2.2023 46 1 9.7165 9.2169 1.3080 47 1 9.2524 12.4973 1.6963 48 1 12.4898 5.7589 0.1639 49 1 12.5618 5.8993 1.9369 50 1 12.5491 4.2925 1.1710 51 1 10.4844 4.8592 -0.9379 52 1 10.3867 3.4272 0.1192 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184525284.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:21:24 Heat of formation + Delta-G solvation = -114.424099 kcal Electronic energy + Delta-G solvation = -29673.860651 eV Core-core repulsion = 25480.510681 eV Total energy + Delta-G solvation = -4193.349971 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.55401 -39.99829 -38.24600 -37.81708 -35.46462 -35.05812 -33.67964 -32.11630 -31.55191 -30.35891 -29.20447 -27.00959 -26.93384 -26.15598 -24.09749 -23.32098 -22.53450 -21.35375 -21.13141 -19.93046 -19.03268 -17.70940 -17.58295 -17.12603 -16.84993 -16.82074 -16.15736 -15.98627 -15.51354 -15.07163 -14.86535 -14.80758 -14.49042 -14.10048 -13.94833 -13.84095 -13.55278 -13.38391 -13.20449 -13.02574 -12.74676 -12.56734 -12.52672 -12.22555 -11.94559 -11.93847 -11.81771 -11.77510 -11.61815 -11.03730 -10.93249 -10.86198 -10.42749 -10.35554 -10.29547 -10.22642 -10.18887 -9.99958 -9.83665 -9.67581 -9.45995 -8.90649 -8.66628 -6.94518 -5.81403 -3.09074 2.26170 2.31299 2.46045 2.92478 3.39682 3.46111 3.47762 3.61818 4.20881 4.41036 4.43190 4.54864 4.59269 4.63399 4.69174 4.75390 4.84072 4.88753 4.89892 4.95310 5.04406 5.06016 5.20549 5.26432 5.40354 5.47294 5.53379 5.53865 5.66596 5.67357 5.75873 5.82180 5.87281 5.93604 5.98338 6.03460 6.19205 6.24417 6.28923 6.40186 6.46429 6.47554 6.57966 6.79696 6.89202 7.06647 7.28381 7.67135 7.85324 8.01332 8.38227 9.49571 10.07633 10.42202 11.41662 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.013916 B = 0.001847 C = 0.001669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2011.529748 B =15152.391807 C =16772.769176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.367 6.367 3 C 0.043 3.957 4 C 0.512 3.488 5 O -0.514 6.514 6 N -0.732 5.732 7 C 0.137 3.863 8 C -0.154 4.154 9 C 0.519 3.481 10 O -0.543 6.543 11 N -0.607 5.607 12 C 0.104 3.896 13 C -0.126 4.126 14 C -0.089 4.089 15 H 0.072 0.928 16 C 0.156 3.844 17 N -0.732 5.732 18 C -0.237 4.237 19 H 0.070 0.930 20 C -0.015 4.015 21 N -0.934 5.934 22 Si 0.906 3.094 23 H -0.281 1.281 24 H -0.292 1.292 25 H -0.292 1.292 26 C -0.097 4.097 27 H 0.072 0.928 28 C -0.147 4.147 29 C 0.117 3.883 30 H 0.044 0.956 31 H 0.092 0.908 32 H 0.045 0.955 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.401 0.599 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.103 0.897 39 H 0.101 0.899 40 H 0.082 0.918 41 H 0.072 0.928 42 H 0.064 0.936 43 H 0.089 0.911 44 H 0.016 0.984 45 H 0.025 0.975 46 H 0.383 0.617 47 H 0.254 0.746 48 H 0.056 0.944 49 H 0.068 0.932 50 H 0.051 0.949 51 H 0.067 0.933 52 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.315 -16.895 -6.710 23.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.285 6.285 3 C -0.037 4.037 4 C 0.297 3.703 5 O -0.388 6.388 6 N -0.386 5.386 7 C 0.013 3.987 8 C -0.194 4.194 9 C 0.307 3.693 10 O -0.421 6.421 11 N -0.340 5.340 12 C -0.018 4.018 13 C -0.164 4.164 14 C -0.108 4.108 15 H 0.090 0.910 16 C 0.028 3.972 17 N -0.376 5.376 18 C -0.368 4.368 19 H 0.088 0.912 20 C -0.210 4.210 21 N -0.584 5.584 22 Si 0.737 3.263 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.219 1.219 26 C -0.117 4.117 27 H 0.091 0.909 28 C -0.205 4.205 29 C -0.005 4.005 30 H 0.063 0.937 31 H 0.110 0.890 32 H 0.063 0.937 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.235 0.765 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.121 0.879 39 H 0.119 0.881 40 H 0.100 0.900 41 H 0.091 0.909 42 H 0.082 0.918 43 H 0.108 0.892 44 H 0.034 0.966 45 H 0.042 0.958 46 H 0.216 0.784 47 H 0.064 0.936 48 H 0.075 0.925 49 H 0.087 0.913 50 H 0.070 0.930 51 H 0.085 0.915 52 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -13.461 -18.402 -6.566 23.726 hybrid contribution -0.376 1.902 0.460 1.993 sum -13.837 -16.500 -6.106 22.383 Atomic orbital electron populations 1.22857 0.80180 1.03460 1.00205 1.88026 1.19933 1.25109 1.95435 1.22237 0.91477 0.87173 1.02781 1.20244 0.88693 0.84546 0.76849 1.90771 1.74566 1.26440 1.47039 1.45854 1.07212 1.08818 1.76752 1.21047 0.77712 0.95656 1.04268 1.21843 0.93350 0.98963 1.05264 1.20240 0.88866 0.84009 0.76212 1.90726 1.74896 1.26231 1.50248 1.48148 1.07093 1.06152 1.72577 1.21907 0.97600 0.82234 1.00099 1.21941 0.96105 1.01095 0.97308 1.21335 0.94561 0.94169 1.00701 0.90963 1.20762 0.96550 0.85515 0.94342 1.42378 1.62046 1.02152 1.31020 1.19279 1.25434 0.88433 1.03647 0.91227 1.24715 1.00681 0.97231 0.98413 1.69659 1.40853 1.17125 1.30717 0.86134 0.77736 0.81871 0.80565 1.20590 1.21889 1.21919 1.21456 0.95978 0.95791 0.98444 0.90921 1.21833 0.94390 1.01450 1.02821 1.21719 0.78462 1.01801 0.98526 0.93725 0.88998 0.93686 0.90054 0.90091 0.76497 0.90386 0.90330 0.87896 0.88072 0.89995 0.90943 0.91754 0.89207 0.96573 0.95771 0.78352 0.93621 0.92500 0.91304 0.92968 0.91462 0.89163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 11.01 101.05 1.11 1.26 16 2 O -0.37 -3.50 10.24 -55.14 -0.56 -4.06 16 3 C 0.04 0.28 6.42 36.01 0.23 0.52 16 4 C 0.51 5.11 7.91 -10.99 -0.09 5.02 16 5 O -0.51 -7.94 16.50 -14.35 -0.24 -8.18 16 6 N -0.73 -5.20 5.56 -60.29 -0.33 -5.53 16 7 C 0.14 1.28 4.96 -4.04 -0.02 1.26 16 8 C -0.15 -1.15 4.16 -27.88 -0.12 -1.26 16 9 C 0.52 6.02 7.70 -10.99 -0.08 5.94 16 10 O -0.54 -8.35 15.39 5.56 0.09 -8.27 16 11 N -0.61 -6.75 2.97 -172.77 -0.51 -7.27 16 12 C 0.10 1.03 6.34 -3.71 -0.02 1.00 16 13 C -0.13 -1.65 5.25 -26.61 -0.14 -1.79 16 14 C -0.09 -1.28 1.73 -90.58 -0.16 -1.44 16 15 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 16 C 0.16 2.93 5.41 -4.04 -0.02 2.91 16 17 N -0.73 -17.49 5.32 -59.91 -0.32 -17.81 16 18 C -0.24 -6.43 9.99 -15.06 -0.15 -6.58 16 19 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 20 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 21 N -0.93 -27.26 13.06 55.49 0.72 -26.54 16 22 Si 0.91 21.93 29.55 -169.99 -5.02 16.91 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 25 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 26 C -0.10 -1.21 2.41 -90.51 -0.22 -1.43 16 27 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 28 C -0.15 -1.73 8.81 37.16 0.33 -1.40 16 29 C 0.12 1.38 5.72 -3.71 -0.02 1.35 16 30 H 0.04 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.04 0.17 8.14 -51.93 -0.42 -0.26 16 33 H 0.08 0.32 8.14 -51.92 -0.42 -0.10 16 34 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.40 1.33 8.47 -40.82 -0.35 0.99 16 36 H 0.08 0.88 8.10 -51.92 -0.42 0.46 16 37 H 0.08 0.91 8.10 -51.93 -0.42 0.49 16 38 H 0.10 0.60 7.69 -51.93 -0.40 0.20 16 39 H 0.10 0.53 7.94 -51.93 -0.41 0.12 16 40 H 0.08 0.59 5.93 -51.93 -0.31 0.28 16 41 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.09 1.36 7.15 -51.93 -0.37 0.99 16 44 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.02 0.47 6.14 -51.93 -0.32 0.15 16 46 H 0.38 9.48 6.84 -40.82 -0.28 9.20 16 47 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 48 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 49 H 0.07 0.88 6.30 -51.93 -0.33 0.55 16 50 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 51 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 52 H 0.09 1.14 7.01 -51.93 -0.36 0.78 16 LS Contribution 414.90 15.07 6.25 6.25 Total: -1.00 -36.62 414.90 -8.40 -45.02 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -9.01 Total: 4.61 kcal Atomic # 6 Polarization: 4.32 SS G_CDS: 0.54 Total: 4.86 kcal Atomic # 7 Polarization: -56.70 SS G_CDS: -0.44 Total: -57.15 kcal Atomic # 8 Polarization: -19.79 SS G_CDS: -0.72 Total: -20.51 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -36.62 -8.40 -45.02 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184525284.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.403 kcal (2) G-P(sol) polarization free energy of solvation -36.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds