Wall clock time and date at job start Wed Apr 1 2020 01:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42897 * 114.00450 * 2 1 4 4 C 1.50699 * 109.47272 * 179.97438 * 3 2 1 5 5 O 1.21277 * 120.00104 * 0.02562 * 4 3 2 6 6 N 1.34775 * 119.99990 * 180.02562 * 4 3 2 7 7 C 1.46496 * 120.00092 * 180.02562 * 6 4 3 8 8 C 1.53004 * 109.47329 * 179.97438 * 7 6 4 9 9 C 1.50696 * 109.47015 * 180.02562 * 8 7 6 10 10 O 1.21277 * 120.00316 * 359.97438 * 9 8 7 11 11 N 1.34775 * 119.99778 * 180.02562 * 9 8 7 12 12 C 1.46924 * 120.63263 * 359.97438 * 11 9 8 13 13 C 1.53191 * 108.77817 * 126.39226 * 12 11 9 14 14 C 1.53042 * 109.31021 * 54.63576 * 13 12 11 15 15 H 1.08999 * 109.45763 * 58.66186 * 14 13 12 16 16 C 1.53004 * 109.46094 * 178.61558 * 14 13 12 17 17 N 1.46499 * 109.47294 * 295.07434 * 16 14 13 18 18 C 1.36938 * 120.00288 * 180.02562 * 17 16 14 19 19 H 1.07999 * 119.99678 * 359.97438 * 18 17 16 20 20 C 1.38809 * 120.00149 * 179.97438 * 18 17 16 21 21 N 1.31624 * 119.99981 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00166 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47109 * 359.97438 * 22 20 18 24 24 H 1.48506 * 109.47539 * 119.99698 * 22 20 18 25 25 H 1.48502 * 109.47393 * 239.99788 * 22 20 18 26 26 C 1.53035 * 109.54021 * 298.63480 * 14 13 12 27 27 H 1.09002 * 109.53064 * 301.39966 * 26 14 13 28 28 C 1.52998 * 109.50087 * 181.31694 * 26 14 13 29 29 C 1.46929 * 120.63328 * 179.97438 * 11 9 8 30 30 H 1.08997 * 109.46579 * 59.99690 * 1 2 3 31 31 H 1.08998 * 109.47212 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47028 * 300.00490 * 1 2 3 33 33 H 1.09007 * 109.46825 * 59.99752 * 3 2 1 34 34 H 1.09003 * 109.47050 * 300.00108 * 3 2 1 35 35 H 0.96998 * 120.00024 * 359.97438 * 6 4 3 36 36 H 1.09007 * 109.47076 * 60.00023 * 7 6 4 37 37 H 1.09003 * 109.47392 * 300.00017 * 7 6 4 38 38 H 1.08994 * 109.46931 * 60.00149 * 8 7 6 39 39 H 1.09001 * 109.47089 * 299.99832 * 8 7 6 40 40 H 1.08999 * 109.58511 * 6.60547 * 12 11 9 41 41 H 1.09005 * 109.70744 * 246.25091 * 12 11 9 42 42 H 1.09006 * 109.49784 * 294.68835 * 13 12 11 43 43 H 1.09001 * 109.50459 * 174.58802 * 13 12 11 44 44 H 1.09005 * 109.46981 * 55.06807 * 16 14 13 45 45 H 1.08993 * 109.47289 * 175.06685 * 16 14 13 46 46 H 0.97004 * 119.99457 * 359.97438 * 17 16 14 47 47 H 0.96997 * 119.99862 * 179.97438 * 21 20 18 48 48 H 1.09004 * 109.47145 * 300.16145 * 28 26 14 49 49 H 1.09002 * 109.46977 * 60.16060 * 28 26 14 50 50 H 1.09000 * 109.47198 * 180.16667 * 28 26 14 51 51 H 1.08998 * 109.59209 * 113.81639 * 29 11 9 52 52 H 1.09003 * 109.58217 * 353.38921 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1863 0.0006 5 8 4.0342 0.0914 0.0006 6 7 4.2766 2.2966 0.0013 7 6 5.7370 2.1809 0.0013 8 6 6.3594 3.5786 0.0014 9 6 7.8617 3.4595 0.0009 10 8 8.3832 2.3646 0.0009 11 7 8.6256 4.5698 0.0014 12 6 8.0085 5.9031 0.0020 13 6 8.5823 6.7116 1.1698 14 6 10.1096 6.7259 1.0734 15 1 10.4092 7.1618 0.1203 16 6 10.6849 7.5614 2.2188 17 7 10.2718 8.9579 2.0601 18 6 10.6703 9.8979 2.9727 19 1 11.2888 9.6096 3.8097 20 6 10.2793 11.2212 2.8219 21 7 9.5259 11.5726 1.8014 22 14 10.8223 12.5033 4.0671 23 1 11.6561 11.8565 5.1120 24 1 11.6153 13.5550 3.3812 25 1 9.6269 13.1176 4.6986 26 6 10.6420 5.2943 1.1692 27 1 10.3224 4.8490 2.1114 28 6 12.1706 5.3126 1.1057 29 6 10.0915 4.4699 0.0014 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.6887 1.8463 0.8900 34 1 1.6887 1.8463 -0.8900 35 1 3.8595 3.1723 0.0009 36 1 6.0587 1.6404 -0.8890 37 1 6.0586 1.6395 0.8911 38 1 6.0378 4.1194 0.8914 39 1 6.0379 4.1196 -0.8885 40 1 6.9293 5.8062 0.1200 41 1 8.2292 6.4107 -0.9371 42 1 8.2816 6.2533 2.1121 43 1 8.2054 7.7333 1.1251 44 1 10.3139 7.1787 3.1697 45 1 11.7730 7.5002 2.2023 46 1 9.7165 9.2169 1.3080 47 1 9.2524 12.4973 1.6963 48 1 12.4898 5.7589 0.1639 49 1 12.5618 5.8993 1.9369 50 1 12.5491 4.2925 1.1710 51 1 10.4844 4.8592 -0.9379 52 1 10.3867 3.4272 0.1192 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184525284.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:21:23 Heat of formation + Delta-G solvation = -141.452473 kcal Electronic energy + Delta-G solvation = -29675.032690 eV Core-core repulsion = 25480.510681 eV Total energy + Delta-G solvation = -4194.522009 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.46836 -40.78157 -39.30298 -38.42421 -36.57306 -36.25548 -35.01854 -33.48575 -32.32649 -31.96708 -29.75190 -28.34805 -27.82813 -26.72883 -25.58582 -24.41335 -23.59444 -22.65717 -21.88155 -21.04624 -19.95336 -19.13451 -18.39098 -18.27726 -17.52576 -17.41218 -16.95875 -16.86512 -16.65369 -16.24440 -15.89050 -15.69348 -15.50093 -15.42705 -15.19073 -14.86056 -14.83208 -14.32281 -14.17449 -14.03597 -13.89443 -13.80981 -13.16373 -13.12817 -13.05386 -12.93087 -12.84787 -12.73386 -12.58775 -12.48870 -12.34047 -12.12889 -11.92754 -11.88474 -11.61541 -11.44892 -11.15952 -11.04822 -10.90122 -10.75795 -10.75070 -10.20729 -9.63443 -8.93873 -7.93452 -5.20247 1.48276 1.49204 1.53436 1.57758 1.58514 1.66167 2.13823 2.57377 3.12815 3.40369 3.50553 3.66905 3.73227 3.80589 3.84345 3.91787 4.04553 4.05924 4.22908 4.26509 4.30723 4.34004 4.42542 4.52014 4.53369 4.56370 4.59771 4.65936 4.69227 4.78064 4.81227 4.83658 4.89347 4.90441 4.91680 5.03463 5.12387 5.16393 5.21634 5.30582 5.33408 5.37979 5.50457 5.56443 5.62666 6.05541 6.30163 6.39386 6.53959 7.11949 7.21830 7.37168 8.13572 8.38248 9.29914 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.013916 B = 0.001847 C = 0.001669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2011.529748 B =15152.391807 C =16772.769176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.412 6.412 3 C 0.046 3.954 4 C 0.504 3.496 5 O -0.581 6.581 6 N -0.709 5.709 7 C 0.142 3.858 8 C -0.141 4.141 9 C 0.514 3.486 10 O -0.588 6.588 11 N -0.606 5.606 12 C 0.110 3.890 13 C -0.122 4.122 14 C -0.079 4.079 15 H 0.068 0.932 16 C 0.155 3.845 17 N -0.740 5.740 18 C -0.243 4.243 19 H 0.069 0.931 20 C -0.071 4.071 21 N -0.965 5.965 22 Si 0.967 3.033 23 H -0.271 1.271 24 H -0.294 1.294 25 H -0.293 1.293 26 C -0.087 4.087 27 H 0.064 0.936 28 C -0.145 4.145 29 C 0.119 3.881 30 H 0.061 0.939 31 H 0.091 0.909 32 H 0.060 0.940 33 H 0.113 0.887 34 H 0.115 0.885 35 H 0.424 0.576 36 H 0.053 0.947 37 H 0.049 0.951 38 H 0.130 0.870 39 H 0.137 0.863 40 H 0.119 0.881 41 H 0.083 0.917 42 H 0.060 0.940 43 H 0.069 0.931 44 H 0.010 0.990 45 H 0.023 0.977 46 H 0.377 0.623 47 H 0.251 0.749 48 H 0.060 0.940 49 H 0.055 0.945 50 H 0.066 0.934 51 H 0.078 0.922 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.918 -15.948 -6.987 23.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.331 6.331 3 C -0.033 4.033 4 C 0.291 3.709 5 O -0.460 6.460 6 N -0.365 5.365 7 C 0.018 3.982 8 C -0.180 4.180 9 C 0.303 3.697 10 O -0.469 6.469 11 N -0.338 5.338 12 C -0.012 4.012 13 C -0.160 4.160 14 C -0.098 4.098 15 H 0.087 0.913 16 C 0.029 3.971 17 N -0.383 5.383 18 C -0.375 4.375 19 H 0.087 0.913 20 C -0.263 4.263 21 N -0.616 5.616 22 Si 0.797 3.203 23 H -0.195 1.195 24 H -0.221 1.221 25 H -0.220 1.220 26 C -0.106 4.106 27 H 0.082 0.918 28 C -0.203 4.203 29 C -0.003 4.003 30 H 0.080 0.920 31 H 0.109 0.891 32 H 0.079 0.921 33 H 0.131 0.869 34 H 0.133 0.867 35 H 0.263 0.737 36 H 0.072 0.928 37 H 0.068 0.932 38 H 0.148 0.852 39 H 0.155 0.845 40 H 0.137 0.863 41 H 0.101 0.899 42 H 0.078 0.922 43 H 0.088 0.912 44 H 0.028 0.972 45 H 0.040 0.960 46 H 0.209 0.791 47 H 0.060 0.940 48 H 0.079 0.921 49 H 0.074 0.926 50 H 0.085 0.915 51 H 0.096 0.904 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -15.078 -17.411 -6.830 24.024 hybrid contribution 0.164 1.576 0.572 1.685 sum -14.914 -15.835 -6.258 22.635 Atomic orbital electron populations 1.23028 0.78205 1.04070 1.01771 1.87967 1.22218 1.27103 1.95838 1.22411 0.88432 0.86721 1.05758 1.21072 0.90497 0.83964 0.75364 1.90741 1.75965 1.29011 1.50311 1.45631 1.06143 1.09515 1.75199 1.20788 0.79110 0.96559 1.01787 1.21825 0.89950 0.98062 1.08183 1.20936 0.90522 0.83218 0.75008 1.90717 1.76021 1.27933 1.52236 1.48216 1.06806 1.06669 1.72088 1.21976 0.99376 0.80887 0.98917 1.21846 0.94871 1.00539 0.98787 1.21220 0.95738 0.94412 0.98438 0.91344 1.20892 0.96530 0.83785 0.95896 1.42526 1.61860 1.03657 1.30229 1.19618 1.24679 0.89314 1.03911 0.91257 1.25445 1.01440 0.99106 1.00354 1.69787 1.42238 1.17197 1.32342 0.85163 0.77198 0.79302 0.78633 1.19524 1.22118 1.21974 1.21336 0.96431 0.94340 0.98526 0.91781 1.21809 0.93847 1.02194 1.02463 1.21631 0.79299 1.00956 0.98445 0.92020 0.89076 0.92132 0.86949 0.86745 0.73748 0.92833 0.93239 0.85177 0.84514 0.86323 0.89894 0.92164 0.91248 0.97215 0.95967 0.79058 0.94007 0.92059 0.92612 0.91521 0.90391 0.90153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 11.01 113.37 1.25 1.46 16 2 O -0.41 -7.47 10.24 -129.94 -1.33 -8.80 16 3 C 0.05 0.49 6.42 71.24 0.46 0.95 16 4 C 0.50 9.66 7.91 87.66 0.69 10.35 16 5 O -0.58 -18.72 16.50 16.02 0.26 -18.46 16 6 N -0.71 -8.64 5.56 -463.06 -2.57 -11.21 16 7 C 0.14 2.55 4.96 86.38 0.43 2.98 16 8 C -0.14 -1.66 4.16 29.85 0.12 -1.54 16 9 C 0.51 11.07 7.70 87.66 0.67 11.74 16 10 O -0.59 -18.15 15.39 -3.02 -0.05 -18.20 16 11 N -0.61 -12.18 2.97 -818.92 -2.43 -14.62 16 12 C 0.11 1.83 6.34 86.36 0.55 2.38 16 13 C -0.12 -3.01 5.25 30.67 0.16 -2.84 16 14 C -0.08 -2.23 1.73 -10.77 -0.02 -2.25 16 15 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 16 C 0.16 5.84 5.41 86.38 0.47 6.31 16 17 N -0.74 -35.47 5.32 -343.45 -1.83 -37.29 16 18 C -0.24 -13.20 9.99 84.03 0.84 -12.36 16 19 H 0.07 3.69 7.83 -2.91 -0.02 3.66 16 20 C -0.07 -3.94 5.50 84.86 0.47 -3.48 16 21 N -0.96 -56.45 13.06 21.65 0.28 -56.16 16 22 Si 0.97 44.97 29.55 68.60 2.03 46.99 16 23 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 24 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 25 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 26 C -0.09 -2.08 2.41 -10.72 -0.03 -2.10 16 27 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 28 C -0.15 -3.30 8.81 71.98 0.63 -2.67 16 29 C 0.12 2.65 5.72 86.36 0.49 3.14 16 30 H 0.06 0.29 8.14 -2.39 -0.02 0.27 16 31 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.06 0.31 8.14 -2.39 -0.02 0.29 16 33 H 0.11 0.49 8.14 -2.38 -0.02 0.47 16 34 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 35 H 0.42 1.16 8.47 -92.71 -0.79 0.37 16 36 H 0.05 1.24 8.10 -2.38 -0.02 1.22 16 37 H 0.05 1.19 8.10 -2.39 -0.02 1.17 16 38 H 0.13 0.93 7.69 -2.39 -0.02 0.91 16 39 H 0.14 0.73 7.94 -2.39 -0.02 0.72 16 40 H 0.12 1.13 5.93 -2.39 -0.01 1.12 16 41 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 42 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 43 H 0.07 2.04 7.15 -2.39 -0.02 2.02 16 44 H 0.01 0.39 8.14 -2.38 -0.02 0.37 16 45 H 0.02 0.86 6.14 -2.39 -0.01 0.85 16 46 H 0.38 18.79 6.84 -92.71 -0.63 18.15 16 47 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 48 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 49 H 0.05 1.40 6.30 -2.39 -0.02 1.39 16 50 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 51 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 52 H 0.08 1.99 7.01 -2.39 -0.02 1.98 16 Total: -1.00 -83.68 414.90 1.06 -82.62 By element: Atomic # 1 Polarization: 23.56 SS G_CDS: -0.50 Total: 23.06 kcal Atomic # 6 Polarization: 4.89 SS G_CDS: 7.19 Total: 12.08 kcal Atomic # 7 Polarization: -112.74 SS G_CDS: -6.55 Total: -119.29 kcal Atomic # 8 Polarization: -44.35 SS G_CDS: -1.11 Total: -45.46 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 46.99 kcal Total: -83.68 1.06 -82.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184525284.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.831 kcal (2) G-P(sol) polarization free energy of solvation -83.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds