Wall clock time and date at job start Wed Apr 1 2020 01:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 113.99611 * 2 1 4 4 C 1.50706 * 109.47108 * 179.97438 * 3 2 1 5 5 O 1.21277 * 119.99710 * 359.97438 * 4 3 2 6 6 N 1.34775 * 120.00094 * 179.97438 * 4 3 2 7 7 C 1.46502 * 120.00179 * 0.02562 * 6 4 3 8 8 C 1.46501 * 120.00016 * 180.02562 * 6 4 3 9 9 C 1.50698 * 109.47369 * 89.99774 * 8 6 4 10 10 O 1.21281 * 119.99755 * 0.02562 * 9 8 6 11 11 N 1.34773 * 119.99684 * 179.97438 * 9 8 6 12 12 C 1.46924 * 120.63432 * 0.02562 * 11 9 8 13 13 C 1.53194 * 108.77390 * 233.58615 * 12 11 9 14 14 C 1.53040 * 109.31367 * 305.36176 * 13 12 11 15 15 H 1.08995 * 109.45933 * 301.36091 * 14 13 12 16 16 C 1.53001 * 109.45855 * 181.38794 * 14 13 12 17 17 N 1.46490 * 109.47264 * 64.97245 * 16 14 13 18 18 C 1.36935 * 120.00121 * 179.97438 * 17 16 14 19 19 H 1.07997 * 120.00139 * 0.02562 * 18 17 16 20 20 C 1.38816 * 120.00401 * 180.02562 * 18 17 16 21 21 N 1.31624 * 119.99569 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00172 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47055 * 180.02562 * 22 20 18 24 24 H 1.48505 * 109.46653 * 299.99639 * 22 20 18 25 25 H 1.48495 * 109.47483 * 60.00002 * 22 20 18 26 26 C 1.53047 * 109.52411 * 61.37449 * 14 13 12 27 27 H 1.09001 * 109.49516 * 178.67707 * 26 14 13 28 28 C 1.53000 * 109.49788 * 58.58043 * 26 14 13 29 29 C 1.46931 * 120.62671 * 179.97438 * 11 9 8 30 30 H 1.09002 * 109.47250 * 300.00084 * 1 2 3 31 31 H 1.09001 * 109.47170 * 60.00889 * 1 2 3 32 32 H 1.09000 * 109.46642 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47672 * 59.99980 * 3 2 1 34 34 H 1.09004 * 109.47000 * 299.99601 * 3 2 1 35 35 H 1.08999 * 109.47009 * 270.00499 * 7 6 4 36 36 H 1.09007 * 109.46850 * 30.00126 * 7 6 4 37 37 H 1.08999 * 109.47464 * 149.99900 * 7 6 4 38 38 H 1.09000 * 109.46811 * 329.99494 * 8 6 4 39 39 H 1.08999 * 109.46988 * 210.00296 * 8 6 4 40 40 H 1.08997 * 109.58682 * 113.80319 * 12 11 9 41 41 H 1.09004 * 109.58786 * 353.36986 * 12 11 9 42 42 H 1.09002 * 109.49391 * 185.41031 * 13 12 11 43 43 H 1.08995 * 109.50041 * 65.31952 * 13 12 11 44 44 H 1.09003 * 109.46836 * 304.96952 * 16 14 13 45 45 H 1.08999 * 109.47071 * 184.97991 * 16 14 13 46 46 H 0.97000 * 120.00577 * 0.02562 * 17 16 14 47 47 H 0.97001 * 119.99885 * 359.97438 * 21 20 18 48 48 H 1.08998 * 109.47104 * 59.99427 * 28 26 14 49 49 H 1.08995 * 109.46976 * 179.97438 * 28 26 14 50 50 H 1.09003 * 109.47162 * 300.00093 * 28 26 14 51 51 H 1.09001 * 109.58671 * 246.20115 * 29 11 9 52 52 H 1.09000 * 109.58646 * 6.63457 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5125 1.1866 0.0006 5 8 4.0341 0.0917 0.0015 6 7 4.2764 2.2969 0.0002 7 6 3.6463 3.6196 -0.0003 8 6 5.7368 2.1813 0.0003 9 6 6.2377 2.1411 -1.4205 10 8 5.4520 2.2034 -2.3423 11 7 7.5586 2.0370 -1.6666 12 6 8.5226 1.9611 -0.5603 13 6 9.5840 3.0483 -0.7559 14 6 10.2089 2.9016 -2.1452 15 1 10.6515 1.9102 -2.2414 16 6 11.2938 3.9643 -2.3309 17 7 12.3857 3.7178 -1.3861 18 6 13.4757 4.5465 -1.3679 19 1 13.5301 5.3821 -2.0499 20 6 14.5107 4.3127 -0.4730 21 7 14.4446 3.2939 0.3579 22 14 15.9972 5.4436 -0.4478 23 1 16.9536 4.9811 0.5899 24 1 16.6598 5.4198 -1.7767 25 1 15.5605 6.8285 -0.1371 26 6 9.1285 3.0836 -3.2138 27 1 9.5783 3.0023 -4.2034 28 6 8.4825 4.4617 -3.0573 29 6 8.0620 1.9960 -3.0463 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8901 32 1 -0.3632 -1.0277 -0.0005 33 1 1.6885 1.8464 0.8899 34 1 1.6885 1.8463 -0.8901 35 1 3.4900 3.9471 -1.0281 36 1 2.6865 3.5650 0.5136 37 1 4.2935 4.3306 0.5133 38 1 6.0288 1.2657 0.5145 39 1 6.1692 3.0400 0.5138 40 1 8.9996 0.9811 -0.5579 41 1 8.0060 2.1209 0.3861 42 1 10.3580 2.9420 0.0042 43 1 9.1195 4.0304 -0.6678 44 1 10.8703 4.9518 -2.1472 45 1 11.6775 3.9175 -3.3501 46 1 12.3371 2.9671 -0.7737 47 1 13.6725 2.7069 0.3451 48 1 9.2423 5.2344 -3.1738 49 1 7.7135 4.5910 -3.8188 50 1 8.0318 4.5415 -2.0680 51 1 8.5015 1.0187 -3.2461 52 1 7.2416 2.1788 -3.7402 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184534040.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:21:34 Heat of formation + Delta-G solvation = -93.026133 kcal Electronic energy + Delta-G solvation = -30947.863008 eV Core-core repulsion = 26755.440922 eV Total energy + Delta-G solvation = -4192.422085 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.84736 -39.92772 -38.26359 -37.63258 -35.72826 -35.13940 -33.65128 -31.93767 -30.50870 -30.21191 -28.55117 -27.12313 -26.88111 -26.47549 -25.30689 -23.48672 -23.10362 -21.76427 -20.59403 -19.45251 -18.39995 -17.82545 -17.63327 -17.17323 -17.08024 -16.63027 -16.17352 -15.62692 -15.56356 -15.00780 -14.94337 -14.63874 -14.53337 -14.18570 -13.79906 -13.69199 -13.60635 -13.35568 -13.25675 -13.02109 -12.93415 -12.83573 -12.63090 -12.50602 -12.37343 -12.10225 -11.84990 -11.65571 -11.44435 -11.03429 -10.73370 -10.72811 -10.41549 -10.34479 -10.23532 -10.19881 -10.08453 -10.05872 -9.95950 -9.17860 -8.99650 -8.87726 -8.63686 -6.99896 -6.11215 -3.10406 2.12413 2.35126 2.51232 2.97823 3.49399 3.50740 3.54151 3.71675 4.16678 4.32100 4.49753 4.64586 4.67461 4.68779 4.71705 4.80327 4.87781 4.87992 4.92762 4.94935 5.02617 5.05049 5.09535 5.17509 5.24273 5.31191 5.36750 5.50093 5.60053 5.65628 5.72910 5.75758 5.80031 5.89467 5.92039 5.95324 6.13105 6.18361 6.28402 6.34226 6.40260 6.51880 6.56065 6.71796 6.84219 6.91656 7.30511 7.80309 7.81613 8.06769 8.75098 9.22873 10.09081 10.24299 11.37362 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.025115 B = 0.002023 C = 0.001972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.624096 B =13836.609893 C =14198.769202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.367 6.367 3 C 0.048 3.952 4 C 0.521 3.479 5 O -0.514 6.514 6 N -0.600 5.600 7 C 0.076 3.924 8 C 0.098 3.902 9 C 0.501 3.499 10 O -0.539 6.539 11 N -0.604 5.604 12 C 0.104 3.896 13 C -0.127 4.127 14 C -0.090 4.090 15 H 0.070 0.930 16 C 0.164 3.836 17 N -0.743 5.743 18 C -0.330 4.330 19 H 0.063 0.937 20 C -0.046 4.046 21 N -0.944 5.944 22 Si 1.079 2.921 23 H -0.285 1.285 24 H -0.296 1.296 25 H -0.296 1.296 26 C -0.097 4.097 27 H 0.081 0.919 28 C -0.143 4.143 29 C 0.118 3.882 30 H 0.044 0.956 31 H 0.044 0.956 32 H 0.092 0.908 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.064 0.936 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.115 0.885 39 H 0.111 0.889 40 H 0.073 0.927 41 H 0.080 0.920 42 H 0.084 0.916 43 H 0.069 0.931 44 H 0.022 0.978 45 H 0.018 0.982 46 H 0.366 0.634 47 H 0.254 0.746 48 H 0.061 0.939 49 H 0.048 0.952 50 H 0.054 0.946 51 H 0.066 0.934 52 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.443 -0.250 -0.098 27.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.285 6.285 3 C -0.032 4.032 4 C 0.308 3.692 5 O -0.388 6.388 6 N -0.335 5.335 7 C -0.067 4.067 8 C -0.028 4.028 9 C 0.288 3.712 10 O -0.416 6.416 11 N -0.338 5.338 12 C -0.018 4.018 13 C -0.165 4.165 14 C -0.109 4.109 15 H 0.089 0.911 16 C 0.037 3.963 17 N -0.389 5.389 18 C -0.461 4.461 19 H 0.081 0.919 20 C -0.244 4.244 21 N -0.590 5.590 22 Si 0.910 3.090 23 H -0.210 1.210 24 H -0.223 1.223 25 H -0.223 1.223 26 C -0.117 4.117 27 H 0.100 0.900 28 C -0.200 4.200 29 C -0.005 4.005 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.110 0.890 33 H 0.098 0.902 34 H 0.100 0.900 35 H 0.083 0.917 36 H 0.092 0.908 37 H 0.096 0.904 38 H 0.133 0.867 39 H 0.129 0.871 40 H 0.092 0.908 41 H 0.099 0.901 42 H 0.102 0.898 43 H 0.088 0.912 44 H 0.040 0.960 45 H 0.035 0.965 46 H 0.199 0.801 47 H 0.065 0.935 48 H 0.080 0.920 49 H 0.067 0.933 50 H 0.073 0.927 51 H 0.084 0.916 52 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -26.010 -0.506 0.001 26.015 hybrid contribution -1.548 -0.065 -0.667 1.687 sum -27.558 -0.571 -0.667 27.572 Atomic orbital electron populations 1.22849 0.80240 1.03434 1.00133 1.88024 1.19887 1.25192 1.95411 1.22247 0.91363 0.87018 1.02566 1.20222 0.88816 0.84009 0.76190 1.90738 1.74413 1.26161 1.47480 1.47310 1.05222 1.06703 1.74289 1.21919 0.98585 0.83383 1.02774 1.21396 0.80713 1.05782 0.94952 1.21032 0.82067 0.76218 0.91908 1.90664 1.54807 1.50053 1.46086 1.48097 1.05554 1.72318 1.07786 1.21898 0.90854 1.00387 0.88703 1.21965 0.97689 0.98371 0.98440 1.21326 0.95147 1.00622 0.93820 0.91123 1.20643 0.87500 0.94979 0.93195 1.42383 1.19612 1.34359 1.42522 1.20027 0.98284 1.08569 1.19226 0.91904 1.25756 1.01524 1.01483 0.95590 1.70897 1.31996 1.17017 1.39110 0.83246 0.75607 0.74390 0.75726 1.21035 1.22315 1.22323 1.21470 0.95252 0.95242 0.99748 0.90044 1.21837 1.00267 0.96458 1.01415 1.21677 0.97406 0.98624 0.82746 0.93772 0.93727 0.88996 0.90168 0.89956 0.91718 0.90828 0.90449 0.86712 0.87121 0.90848 0.90117 0.89756 0.91243 0.96001 0.96451 0.80055 0.93494 0.91987 0.93327 0.92739 0.91560 0.89220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.30 16 2 O -0.37 -4.01 10.24 -55.14 -0.56 -4.57 16 3 C 0.05 0.41 4.97 36.01 0.18 0.59 16 4 C 0.52 6.32 7.75 -10.98 -0.09 6.23 16 5 O -0.51 -8.60 16.08 -14.35 -0.23 -8.83 16 6 N -0.60 -5.88 2.36 -182.95 -0.43 -6.31 16 7 C 0.08 0.44 10.29 59.85 0.62 1.06 16 8 C 0.10 0.98 4.28 -5.19 -0.02 0.96 16 9 C 0.50 6.56 7.77 -10.99 -0.09 6.47 16 10 O -0.54 -8.79 15.84 5.56 0.09 -8.71 16 11 N -0.60 -7.39 2.41 -172.74 -0.42 -7.81 16 12 C 0.10 1.15 6.34 -3.71 -0.02 1.13 16 13 C -0.13 -1.71 4.90 -26.61 -0.13 -1.84 16 14 C -0.09 -1.35 1.96 -90.57 -0.18 -1.53 16 15 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 16 C 0.16 3.20 5.19 -4.05 -0.02 3.18 16 17 N -0.74 -18.17 5.31 -59.91 -0.32 -18.49 16 18 C -0.33 -9.24 9.99 -15.06 -0.15 -9.39 16 19 H 0.06 1.74 7.83 -52.49 -0.41 1.33 16 20 C -0.05 -1.33 5.50 -17.43 -0.10 -1.43 16 21 N -0.94 -28.80 13.70 55.49 0.76 -28.04 16 22 Si 1.08 25.76 29.92 -169.99 -5.09 20.67 16 23 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 24 H -0.30 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.30 -6.73 7.11 56.52 0.40 -6.33 16 26 C -0.10 -1.25 2.72 -90.47 -0.25 -1.50 16 27 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 28 C -0.14 -1.80 8.38 37.16 0.31 -1.49 16 29 C 0.12 1.48 5.83 -3.68 -0.02 1.46 16 30 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.08 0.42 7.40 -51.93 -0.38 0.03 16 34 H 0.08 0.56 8.11 -51.93 -0.42 0.14 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.07 0.23 6.44 -51.93 -0.33 -0.10 16 37 H 0.08 0.33 7.89 -51.93 -0.41 -0.08 16 38 H 0.11 1.20 7.22 -51.93 -0.38 0.82 16 39 H 0.11 0.78 7.44 -51.93 -0.39 0.39 16 40 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.08 0.70 5.93 -51.93 -0.31 0.39 16 42 H 0.08 1.31 7.15 -51.93 -0.37 0.94 16 43 H 0.07 0.94 6.33 -51.93 -0.33 0.61 16 44 H 0.02 0.44 6.74 -51.93 -0.35 0.09 16 45 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.37 9.04 5.68 -40.82 -0.23 8.81 16 47 H 0.25 7.57 6.77 -40.82 -0.28 7.29 16 48 H 0.06 0.83 6.58 -51.93 -0.34 0.48 16 49 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 50 H 0.05 0.69 5.97 -51.93 -0.31 0.38 16 51 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 52 H 0.09 1.21 7.00 -51.93 -0.36 0.84 16 LS Contribution 405.98 15.07 6.12 6.12 Total: -1.00 -38.28 405.98 -7.55 -45.83 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -8.63 Total: 4.94 kcal Atomic # 6 Polarization: 4.04 SS G_CDS: 1.16 Total: 5.20 kcal Atomic # 7 Polarization: -60.24 SS G_CDS: -0.41 Total: -60.65 kcal Atomic # 8 Polarization: -21.40 SS G_CDS: -0.71 Total: -22.11 kcal Atomic # 14 Polarization: 25.76 SS G_CDS: -5.09 Total: 20.67 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -38.28 -7.55 -45.83 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184534040.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.194 kcal (2) G-P(sol) polarization free energy of solvation -38.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds