Wall clock time and date at job start Wed Apr 1 2020 01:21:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 113.99611 * 2 1 4 4 C 1.50706 * 109.47108 * 179.97438 * 3 2 1 5 5 O 1.21277 * 119.99710 * 359.97438 * 4 3 2 6 6 N 1.34775 * 120.00094 * 179.97438 * 4 3 2 7 7 C 1.46502 * 120.00179 * 0.02562 * 6 4 3 8 8 C 1.46501 * 120.00016 * 180.02562 * 6 4 3 9 9 C 1.50698 * 109.47369 * 89.99774 * 8 6 4 10 10 O 1.21281 * 119.99755 * 0.02562 * 9 8 6 11 11 N 1.34773 * 119.99684 * 179.97438 * 9 8 6 12 12 C 1.46924 * 120.63432 * 0.02562 * 11 9 8 13 13 C 1.53194 * 108.77390 * 233.58615 * 12 11 9 14 14 C 1.53040 * 109.31367 * 305.36176 * 13 12 11 15 15 H 1.08995 * 109.45933 * 301.36091 * 14 13 12 16 16 C 1.53001 * 109.45855 * 181.38794 * 14 13 12 17 17 N 1.46490 * 109.47264 * 64.97245 * 16 14 13 18 18 C 1.36935 * 120.00121 * 179.97438 * 17 16 14 19 19 H 1.07997 * 120.00139 * 0.02562 * 18 17 16 20 20 C 1.38816 * 120.00401 * 180.02562 * 18 17 16 21 21 N 1.31624 * 119.99569 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00172 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47055 * 180.02562 * 22 20 18 24 24 H 1.48505 * 109.46653 * 299.99639 * 22 20 18 25 25 H 1.48495 * 109.47483 * 60.00002 * 22 20 18 26 26 C 1.53047 * 109.52411 * 61.37449 * 14 13 12 27 27 H 1.09001 * 109.49516 * 178.67707 * 26 14 13 28 28 C 1.53000 * 109.49788 * 58.58043 * 26 14 13 29 29 C 1.46931 * 120.62671 * 179.97438 * 11 9 8 30 30 H 1.09002 * 109.47250 * 300.00084 * 1 2 3 31 31 H 1.09001 * 109.47170 * 60.00889 * 1 2 3 32 32 H 1.09000 * 109.46642 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47672 * 59.99980 * 3 2 1 34 34 H 1.09004 * 109.47000 * 299.99601 * 3 2 1 35 35 H 1.08999 * 109.47009 * 270.00499 * 7 6 4 36 36 H 1.09007 * 109.46850 * 30.00126 * 7 6 4 37 37 H 1.08999 * 109.47464 * 149.99900 * 7 6 4 38 38 H 1.09000 * 109.46811 * 329.99494 * 8 6 4 39 39 H 1.08999 * 109.46988 * 210.00296 * 8 6 4 40 40 H 1.08997 * 109.58682 * 113.80319 * 12 11 9 41 41 H 1.09004 * 109.58786 * 353.36986 * 12 11 9 42 42 H 1.09002 * 109.49391 * 185.41031 * 13 12 11 43 43 H 1.08995 * 109.50041 * 65.31952 * 13 12 11 44 44 H 1.09003 * 109.46836 * 304.96952 * 16 14 13 45 45 H 1.08999 * 109.47071 * 184.97991 * 16 14 13 46 46 H 0.97000 * 120.00577 * 0.02562 * 17 16 14 47 47 H 0.97001 * 119.99885 * 359.97438 * 21 20 18 48 48 H 1.08998 * 109.47104 * 59.99427 * 28 26 14 49 49 H 1.08995 * 109.46976 * 179.97438 * 28 26 14 50 50 H 1.09003 * 109.47162 * 300.00093 * 28 26 14 51 51 H 1.09001 * 109.58671 * 246.20115 * 29 11 9 52 52 H 1.09000 * 109.58646 * 6.63457 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5125 1.1866 0.0006 5 8 4.0341 0.0917 0.0015 6 7 4.2764 2.2969 0.0002 7 6 3.6463 3.6196 -0.0003 8 6 5.7368 2.1813 0.0003 9 6 6.2377 2.1411 -1.4205 10 8 5.4520 2.2034 -2.3423 11 7 7.5586 2.0370 -1.6666 12 6 8.5226 1.9611 -0.5603 13 6 9.5840 3.0483 -0.7559 14 6 10.2089 2.9016 -2.1452 15 1 10.6515 1.9102 -2.2414 16 6 11.2938 3.9643 -2.3309 17 7 12.3857 3.7178 -1.3861 18 6 13.4757 4.5465 -1.3679 19 1 13.5301 5.3821 -2.0499 20 6 14.5107 4.3127 -0.4730 21 7 14.4446 3.2939 0.3579 22 14 15.9972 5.4436 -0.4478 23 1 16.9536 4.9811 0.5899 24 1 16.6598 5.4198 -1.7767 25 1 15.5605 6.8285 -0.1371 26 6 9.1285 3.0836 -3.2138 27 1 9.5783 3.0023 -4.2034 28 6 8.4825 4.4617 -3.0573 29 6 8.0620 1.9960 -3.0463 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8901 32 1 -0.3632 -1.0277 -0.0005 33 1 1.6885 1.8464 0.8899 34 1 1.6885 1.8463 -0.8901 35 1 3.4900 3.9471 -1.0281 36 1 2.6865 3.5650 0.5136 37 1 4.2935 4.3306 0.5133 38 1 6.0288 1.2657 0.5145 39 1 6.1692 3.0400 0.5138 40 1 8.9996 0.9811 -0.5579 41 1 8.0060 2.1209 0.3861 42 1 10.3580 2.9420 0.0042 43 1 9.1195 4.0304 -0.6678 44 1 10.8703 4.9518 -2.1472 45 1 11.6775 3.9175 -3.3501 46 1 12.3371 2.9671 -0.7737 47 1 13.6725 2.7069 0.3451 48 1 9.2423 5.2344 -3.1738 49 1 7.7135 4.5910 -3.8188 50 1 8.0318 4.5415 -2.0680 51 1 8.5015 1.0187 -3.2461 52 1 7.2416 2.1788 -3.7402 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184534040.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:21:33 Heat of formation + Delta-G solvation = -119.128127 kcal Electronic energy + Delta-G solvation = -30948.994875 eV Core-core repulsion = 26755.440922 eV Total energy + Delta-G solvation = -4193.553953 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.80275 -40.85687 -39.31773 -38.40509 -36.86424 -36.51113 -35.04577 -33.32081 -31.87370 -31.23992 -29.22161 -28.35770 -27.79935 -27.23586 -26.12240 -25.34263 -24.26183 -23.16215 -21.57827 -20.34746 -19.67462 -19.16719 -18.61163 -18.40717 -17.82735 -17.35969 -16.96483 -16.80979 -16.53964 -16.39923 -16.05777 -15.70814 -15.58567 -15.38375 -15.28370 -14.97605 -14.69426 -14.34368 -14.23189 -14.03720 -13.88093 -13.71422 -13.62410 -13.38239 -13.21748 -12.91992 -12.78071 -12.68370 -12.64614 -12.48181 -12.35766 -12.13827 -11.90437 -11.78452 -11.49186 -11.46154 -11.15098 -11.09694 -10.96677 -10.88275 -10.79120 -9.81094 -9.69656 -9.07124 -8.37747 -5.31045 1.31530 1.51217 1.59345 1.62951 1.68750 1.85398 2.05351 2.72144 2.93723 3.39700 3.41004 3.51710 3.61418 3.69085 3.75895 3.97977 4.02265 4.09402 4.11068 4.19120 4.19818 4.26596 4.28139 4.34641 4.41242 4.48238 4.55369 4.57481 4.64668 4.66748 4.68672 4.75760 4.77489 4.85147 4.90097 4.91418 4.99607 5.09091 5.12275 5.16235 5.19674 5.28182 5.45165 5.55805 5.60315 5.96081 6.24120 6.31527 6.52645 6.98399 7.08306 7.12485 8.03399 8.13952 9.14460 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.025115 B = 0.002023 C = 0.001972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.624096 B =13836.609893 C =14198.769202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.411 6.411 3 C 0.049 3.951 4 C 0.508 3.492 5 O -0.575 6.575 6 N -0.597 5.597 7 C 0.069 3.931 8 C 0.095 3.905 9 C 0.498 3.502 10 O -0.576 6.576 11 N -0.602 5.602 12 C 0.110 3.890 13 C -0.119 4.119 14 C -0.081 4.081 15 H 0.063 0.937 16 C 0.165 3.835 17 N -0.753 5.753 18 C -0.335 4.335 19 H 0.062 0.938 20 C -0.103 4.103 21 N -0.974 5.974 22 Si 1.126 2.874 23 H -0.293 1.293 24 H -0.281 1.281 25 H -0.277 1.277 26 C -0.088 4.088 27 H 0.086 0.914 28 C -0.136 4.136 29 C 0.121 3.879 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.093 0.907 33 H 0.119 0.881 34 H 0.100 0.900 35 H 0.056 0.944 36 H 0.104 0.896 37 H 0.097 0.903 38 H 0.110 0.890 39 H 0.147 0.853 40 H 0.075 0.925 41 H 0.111 0.889 42 H 0.064 0.936 43 H 0.072 0.928 44 H 0.023 0.977 45 H 0.009 0.991 46 H 0.362 0.638 47 H 0.245 0.755 48 H 0.053 0.947 49 H 0.055 0.945 50 H 0.055 0.945 51 H 0.070 0.930 52 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.988 1.373 0.398 29.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.330 6.330 3 C -0.029 4.029 4 C 0.297 3.703 5 O -0.453 6.453 6 N -0.331 5.331 7 C -0.072 4.072 8 C -0.031 4.031 9 C 0.286 3.714 10 O -0.455 6.455 11 N -0.335 5.335 12 C -0.012 4.012 13 C -0.157 4.157 14 C -0.100 4.100 15 H 0.081 0.919 16 C 0.039 3.961 17 N -0.398 5.398 18 C -0.466 4.466 19 H 0.080 0.920 20 C -0.294 4.294 21 N -0.622 5.622 22 Si 0.951 3.049 23 H -0.219 1.219 24 H -0.207 1.207 25 H -0.204 1.204 26 C -0.108 4.108 27 H 0.104 0.896 28 C -0.194 4.194 29 C -0.002 4.002 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.112 0.888 33 H 0.136 0.864 34 H 0.118 0.882 35 H 0.075 0.925 36 H 0.122 0.878 37 H 0.116 0.884 38 H 0.128 0.872 39 H 0.165 0.835 40 H 0.094 0.906 41 H 0.129 0.871 42 H 0.082 0.918 43 H 0.091 0.909 44 H 0.040 0.960 45 H 0.027 0.973 46 H 0.195 0.805 47 H 0.056 0.944 48 H 0.072 0.928 49 H 0.074 0.926 50 H 0.074 0.926 51 H 0.088 0.912 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -27.599 1.170 0.474 27.628 hybrid contribution -1.119 -0.537 -0.892 1.529 sum -28.718 0.633 -0.419 28.728 Atomic orbital electron populations 1.23046 0.78103 1.04200 1.01760 1.87967 1.22352 1.26859 1.95789 1.22403 0.88729 0.86735 1.05081 1.21040 0.90580 0.83645 0.75061 1.90698 1.75684 1.28425 1.50513 1.47503 1.05087 1.07720 1.72755 1.22213 1.00367 0.81624 1.03035 1.21532 0.81442 1.07130 0.93007 1.21602 0.81791 0.75180 0.92844 1.90644 1.55629 1.51789 1.47463 1.48155 1.05733 1.71821 1.07827 1.21922 0.90207 0.99488 0.89610 1.21847 0.97708 0.99522 0.96627 1.21204 0.94497 0.98520 0.95738 0.91901 1.20762 0.87377 0.96475 0.91494 1.42556 1.20118 1.33800 1.43321 1.20366 0.99166 1.08602 1.18512 0.91982 1.27137 1.04440 1.02331 0.95502 1.70996 1.32170 1.18265 1.40730 0.82643 0.72629 0.73534 0.76091 1.21858 1.20694 1.20357 1.21381 0.94573 0.95711 0.99104 0.89603 1.21771 1.00103 0.95754 1.01736 1.21602 0.96869 0.98606 0.83140 0.91660 0.92470 0.88843 0.86382 0.88192 0.92546 0.87799 0.88444 0.87184 0.83533 0.90628 0.87115 0.91784 0.90924 0.95961 0.97255 0.80490 0.94441 0.92832 0.92572 0.92644 0.91157 0.89932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 11.01 113.37 1.25 1.51 16 2 O -0.41 -8.64 10.24 -129.94 -1.33 -9.97 16 3 C 0.05 0.75 4.97 71.24 0.35 1.10 16 4 C 0.51 11.92 7.75 87.66 0.68 12.59 16 5 O -0.57 -19.65 16.08 16.02 0.26 -19.40 16 6 N -0.60 -10.59 2.36 -851.12 -2.01 -12.60 16 7 C 0.07 0.58 10.29 127.77 1.31 1.90 16 8 C 0.10 1.74 4.28 85.63 0.37 2.10 16 9 C 0.50 12.45 7.77 87.66 0.68 13.13 16 10 O -0.58 -18.49 15.84 -3.03 -0.05 -18.54 16 11 N -0.60 -14.01 2.41 -818.81 -1.97 -15.98 16 12 C 0.11 2.26 6.34 86.36 0.55 2.81 16 13 C -0.12 -3.10 4.90 30.67 0.15 -2.95 16 14 C -0.08 -2.38 1.96 -10.76 -0.02 -2.40 16 15 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 16 C 0.17 6.41 5.19 86.38 0.45 6.86 16 17 N -0.75 -37.13 5.31 -343.47 -1.83 -38.95 16 18 C -0.33 -18.76 9.99 84.03 0.84 -17.92 16 19 H 0.06 3.42 7.83 -2.91 -0.02 3.40 16 20 C -0.10 -5.90 5.50 84.86 0.47 -5.44 16 21 N -0.97 -59.97 13.70 21.65 0.30 -59.67 16 22 Si 1.13 51.50 29.92 68.60 2.05 53.55 16 23 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 24 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 25 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 26 C -0.09 -2.18 2.72 -10.70 -0.03 -2.21 16 27 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 28 C -0.14 -3.27 8.38 71.98 0.60 -2.66 16 29 C 0.12 2.93 5.83 86.38 0.50 3.43 16 30 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.12 0.81 7.40 -2.39 -0.02 0.79 16 34 H 0.10 1.12 8.11 -2.38 -0.02 1.10 16 35 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.10 0.24 6.44 -2.38 -0.02 0.23 16 37 H 0.10 0.46 7.89 -2.39 -0.02 0.44 16 38 H 0.11 2.17 7.22 -2.39 -0.02 2.15 16 39 H 0.15 1.55 7.44 -2.39 -0.02 1.53 16 40 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.11 1.64 5.93 -2.38 -0.01 1.62 16 42 H 0.06 1.97 7.15 -2.39 -0.02 1.95 16 43 H 0.07 1.85 6.33 -2.39 -0.02 1.84 16 44 H 0.02 0.88 6.74 -2.39 -0.02 0.86 16 45 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 46 H 0.36 18.25 5.68 -92.71 -0.53 17.72 16 47 H 0.25 14.92 6.77 -92.71 -0.63 14.30 16 48 H 0.05 1.37 6.58 -2.39 -0.02 1.35 16 49 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 50 H 0.05 1.31 5.97 -2.39 -0.01 1.30 16 51 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 52 H 0.08 2.18 7.00 -2.39 -0.02 2.16 16 Total: -1.00 -85.32 405.98 4.11 -81.21 By element: Atomic # 1 Polarization: 27.95 SS G_CDS: 0.53 Total: 28.49 kcal Atomic # 6 Polarization: 3.71 SS G_CDS: 8.15 Total: 11.86 kcal Atomic # 7 Polarization: -121.69 SS G_CDS: -5.51 Total: -127.20 kcal Atomic # 8 Polarization: -46.79 SS G_CDS: -1.12 Total: -47.91 kcal Atomic # 14 Polarization: 51.50 SS G_CDS: 2.05 Total: 53.55 kcal Total: -85.32 4.11 -81.21 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184534040.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.914 kcal (2) G-P(sol) polarization free energy of solvation -85.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds