Wall clock time and date at job start Wed Apr 1 2020 01:21:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 113.99778 * 2 1 4 4 C 1.50699 * 109.46972 * 179.97438 * 3 2 1 5 5 O 1.21282 * 120.00041 * 359.97438 * 4 3 2 6 6 N 1.34779 * 120.00037 * 179.97438 * 4 3 2 7 7 C 1.46499 * 119.99707 * 0.02562 * 6 4 3 8 8 C 1.46500 * 120.00169 * 179.97438 * 6 4 3 9 9 C 1.50700 * 109.47101 * 90.00231 * 8 6 4 10 10 O 1.21277 * 119.99641 * 359.97438 * 9 8 6 11 11 N 1.34775 * 119.99695 * 180.02562 * 9 8 6 12 12 C 1.46927 * 120.63276 * 359.71453 * 11 9 8 13 13 C 1.53625 * 108.53946 * 126.37356 * 12 11 9 14 14 C 1.53038 * 109.24110 * 54.85837 * 13 12 11 15 15 H 1.08993 * 109.46214 * 58.53410 * 14 13 12 16 16 C 1.53005 * 109.45786 * 178.48925 * 14 13 12 17 17 N 1.46503 * 109.47128 * 295.06597 * 16 14 13 18 18 C 1.36939 * 119.99857 * 179.97438 * 17 16 14 19 19 H 1.07997 * 119.99913 * 0.02562 * 18 17 16 20 20 C 1.38807 * 119.99536 * 179.97438 * 18 17 16 21 21 N 1.31625 * 120.00048 * 180.02562 * 20 18 17 22 22 Si 1.86802 * 120.00339 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.46908 * 89.99795 * 22 20 18 24 24 H 1.48502 * 109.46965 * 209.99728 * 22 20 18 25 25 H 1.48493 * 109.46823 * 329.99624 * 22 20 18 26 26 C 1.53042 * 109.53944 * 298.50607 * 14 13 12 27 27 H 1.08999 * 109.52172 * 301.40253 * 26 14 13 28 28 C 1.53001 * 109.49886 * 181.31943 * 26 14 13 29 29 C 1.46928 * 120.62495 * 180.02562 * 11 9 8 30 30 H 1.08999 * 109.46926 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47442 * 300.00036 * 1 2 3 32 32 H 1.08997 * 109.47171 * 60.00232 * 1 2 3 33 33 H 1.09004 * 109.47054 * 299.99711 * 3 2 1 34 34 H 1.09000 * 109.47187 * 59.99767 * 3 2 1 35 35 H 1.08998 * 109.47147 * 89.99813 * 7 6 4 36 36 H 1.09004 * 109.46865 * 209.99250 * 7 6 4 37 37 H 1.08998 * 109.47138 * 329.99800 * 7 6 4 38 38 H 1.08998 * 109.47257 * 210.00712 * 8 6 4 39 39 H 1.08999 * 109.46628 * 330.00315 * 8 6 4 40 40 H 1.08996 * 109.58672 * 246.20860 * 12 11 9 41 41 H 1.08998 * 109.58266 * 6.63130 * 12 11 9 42 42 H 1.08997 * 109.63358 * 294.86451 * 13 12 11 43 43 H 1.09003 * 109.45747 * 174.74220 * 13 12 11 44 44 H 1.09002 * 109.47022 * 55.06574 * 16 14 13 45 45 H 1.09001 * 109.47207 * 175.06647 * 16 14 13 46 46 H 0.96999 * 119.99687 * 0.02562 * 17 16 14 47 47 H 0.96998 * 120.00266 * 180.02562 * 21 20 18 48 48 H 1.09004 * 109.46675 * 300.16264 * 28 26 14 49 49 H 1.09001 * 109.47188 * 60.16167 * 28 26 14 50 50 H 1.08993 * 109.47125 * 180.16664 * 28 26 14 51 51 H 1.09001 * 109.59079 * 353.37174 * 29 11 9 52 52 H 1.09004 * 109.58603 * 113.65344 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 0.0006 5 8 4.0341 0.0916 0.0015 6 7 4.2764 2.2969 0.0002 7 6 3.6463 3.6195 -0.0003 8 6 5.7369 2.1813 0.0014 9 6 6.2387 2.1405 -1.4190 10 8 5.4536 2.2014 -2.3414 11 7 7.5597 2.0352 -1.6641 12 6 8.5234 1.9655 -0.5572 13 6 9.4003 0.7190 -0.7507 14 6 10.0413 0.7640 -2.1396 15 1 10.6346 1.6731 -2.2365 16 6 10.9456 -0.4564 -2.3233 17 7 12.0618 -0.3840 -1.3771 18 6 13.0072 -1.3745 -1.3564 19 1 12.9302 -2.2088 -2.0379 20 6 14.0650 -1.3056 -0.4603 21 7 14.9740 -2.2573 -0.4407 22 14 14.1985 0.1379 0.7179 23 1 13.4780 -0.1820 1.9763 24 1 15.6288 0.4001 1.0193 25 1 13.5950 1.3430 0.0945 26 6 8.9467 0.7530 -3.2091 27 1 8.3375 -0.1440 -3.0977 28 6 9.5892 0.7648 -4.5976 29 6 8.0642 1.9947 -3.0435 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.6886 1.8464 -0.8900 34 1 1.6885 1.8465 0.8900 35 1 3.4900 3.9479 1.0272 36 1 4.2936 4.3301 -0.5143 37 1 2.6866 3.5645 -0.5141 38 1 6.1689 3.0402 0.5149 39 1 6.0283 1.2658 0.5162 40 1 9.1477 2.8589 -0.5595 41 1 7.9878 1.8939 0.3894 42 1 8.7869 -0.1776 -0.6618 43 1 10.1809 0.7026 0.0100 44 1 10.3718 -1.3648 -2.1395 45 1 11.3332 -0.4714 -3.3420 46 1 12.1307 0.3652 -0.7649 47 1 15.7130 -2.2093 0.1858 48 1 10.1991 1.6614 -4.7080 49 1 10.2170 -0.1185 -4.7149 50 1 8.8092 0.7599 -5.3589 51 1 7.2256 1.9425 -3.7379 52 1 8.6499 2.8917 -3.2449 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184534041.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:21:36 Heat of formation + Delta-G solvation = -119.470813 kcal Electronic energy + Delta-G solvation = -30888.353110 eV Core-core repulsion = 26694.784297 eV Total energy + Delta-G solvation = -4193.568813 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.70943 -40.76120 -39.26789 -38.40263 -36.75676 -36.47890 -35.06988 -33.62944 -32.32352 -31.30708 -29.27520 -28.59905 -27.75399 -27.20433 -26.10027 -25.14871 -23.79110 -22.73807 -21.57293 -20.78868 -19.91708 -19.62135 -18.53373 -18.38351 -17.79986 -17.29982 -17.06110 -16.68226 -16.54802 -16.24127 -15.97685 -15.71804 -15.59491 -15.33752 -15.10333 -14.79762 -14.58025 -14.43608 -14.15670 -14.01916 -13.98735 -13.78947 -13.37353 -13.26312 -13.16843 -13.15756 -13.02862 -12.86029 -12.81792 -12.69737 -12.35474 -12.16722 -12.00830 -11.85283 -11.67072 -11.51556 -11.26400 -11.12092 -10.95472 -10.92946 -10.78961 -9.78328 -9.67517 -9.27509 -8.01635 -5.35727 1.32749 1.37836 1.44146 1.51420 1.52786 1.63706 2.09277 2.50328 2.95383 3.29220 3.42926 3.52050 3.53260 3.72195 3.81088 3.97007 4.03128 4.04727 4.13495 4.17897 4.24796 4.28616 4.32962 4.38625 4.47730 4.48016 4.55493 4.59437 4.63944 4.71432 4.73416 4.77750 4.80072 4.85089 4.91608 4.97296 5.04782 5.08517 5.14554 5.22771 5.27544 5.33557 5.48110 5.57129 5.76051 5.97005 6.21766 6.25698 6.33608 7.00610 7.09020 7.10094 7.83890 8.06238 9.20155 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.015328 B = 0.002335 C = 0.002254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.244265 B =11987.710486 C =12421.113229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.412 6.412 3 C 0.050 3.950 4 C 0.505 3.495 5 O -0.577 6.577 6 N -0.599 5.599 7 C 0.071 3.929 8 C 0.096 3.904 9 C 0.495 3.505 10 O -0.578 6.578 11 N -0.608 5.608 12 C 0.109 3.891 13 C -0.130 4.130 14 C -0.081 4.081 15 H 0.085 0.915 16 C 0.158 3.842 17 N -0.752 5.752 18 C -0.237 4.237 19 H 0.048 0.952 20 C -0.070 4.070 21 N -0.987 5.987 22 Si 0.961 3.039 23 H -0.275 1.275 24 H -0.297 1.297 25 H -0.243 1.243 26 C -0.089 4.089 27 H 0.052 0.948 28 C -0.145 4.145 29 C 0.124 3.876 30 H 0.091 0.909 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.102 0.898 34 H 0.118 0.882 35 H 0.093 0.907 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.156 0.844 39 H 0.105 0.895 40 H 0.100 0.900 41 H 0.108 0.892 42 H 0.051 0.949 43 H 0.076 0.924 44 H 0.008 0.992 45 H 0.029 0.971 46 H 0.369 0.631 47 H 0.258 0.742 48 H 0.069 0.931 49 H 0.052 0.948 50 H 0.064 0.936 51 H 0.076 0.924 52 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.781 21.224 2.766 36.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.331 6.331 3 C -0.029 4.029 4 C 0.294 3.706 5 O -0.455 6.455 6 N -0.332 5.332 7 C -0.070 4.070 8 C -0.030 4.030 9 C 0.283 3.717 10 O -0.458 6.458 11 N -0.340 5.340 12 C -0.013 4.013 13 C -0.168 4.168 14 C -0.100 4.100 15 H 0.104 0.896 16 C 0.032 3.968 17 N -0.399 5.399 18 C -0.368 4.368 19 H 0.066 0.934 20 C -0.261 4.261 21 N -0.637 5.637 22 Si 0.787 3.213 23 H -0.201 1.201 24 H -0.224 1.224 25 H -0.167 1.167 26 C -0.109 4.109 27 H 0.071 0.929 28 C -0.202 4.202 29 C 0.001 3.999 30 H 0.110 0.890 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.120 0.880 34 H 0.136 0.864 35 H 0.111 0.889 36 H 0.098 0.902 37 H 0.104 0.896 38 H 0.173 0.827 39 H 0.123 0.877 40 H 0.118 0.882 41 H 0.126 0.874 42 H 0.069 0.931 43 H 0.095 0.905 44 H 0.026 0.974 45 H 0.047 0.953 46 H 0.203 0.797 47 H 0.066 0.934 48 H 0.088 0.912 49 H 0.071 0.929 50 H 0.083 0.917 51 H 0.094 0.906 52 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -29.765 20.344 2.213 36.121 hybrid contribution 0.708 -0.170 0.336 0.802 sum -29.057 20.174 2.549 35.465 Atomic orbital electron populations 1.23039 0.78110 1.04145 1.01790 1.87978 1.22366 1.26991 1.95789 1.22408 0.88733 0.86669 1.05101 1.21084 0.90642 0.83733 0.75127 1.90724 1.75710 1.28622 1.50493 1.47523 1.05158 1.07708 1.72809 1.22192 0.99442 0.81241 1.04092 1.21530 0.81399 1.07191 0.92905 1.21663 0.81878 0.75251 0.92890 1.90648 1.55745 1.51909 1.47505 1.48253 1.05871 1.71761 1.08141 1.22106 0.91229 0.98573 0.89396 1.22008 0.99204 0.98394 0.97234 1.21279 0.95409 0.98269 0.95035 0.89639 1.20867 0.87537 0.96013 0.92383 1.42639 1.27587 1.25749 1.43876 1.19009 1.01870 1.00587 1.15329 0.93400 1.25632 0.96925 1.01529 1.01989 1.69914 1.15818 1.36625 1.41385 0.85326 0.76806 0.80076 0.79117 1.20069 1.22421 1.16675 1.21351 0.95765 0.98040 0.95771 0.92909 1.21805 1.00790 1.02703 0.94933 1.21625 0.97591 0.97902 0.82780 0.89002 0.91623 0.92378 0.88031 0.86414 0.88879 0.90200 0.89599 0.82694 0.87712 0.88199 0.87370 0.93061 0.90511 0.97440 0.95265 0.79736 0.93359 0.91207 0.92893 0.91691 0.90595 0.89286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 11.01 113.37 1.25 1.53 16 2 O -0.41 -9.00 10.24 -129.94 -1.33 -10.33 16 3 C 0.05 0.76 4.97 71.24 0.35 1.11 16 4 C 0.51 11.98 7.75 87.66 0.68 12.66 16 5 O -0.58 -20.51 16.08 16.00 0.26 -20.26 16 6 N -0.60 -10.04 2.36 -851.13 -2.01 -12.05 16 7 C 0.07 0.46 10.24 127.77 1.31 1.77 16 8 C 0.10 1.61 4.23 85.63 0.36 1.98 16 9 C 0.50 11.75 7.77 87.66 0.68 12.43 16 10 O -0.58 -18.13 15.84 -3.02 -0.05 -18.18 16 11 N -0.61 -12.93 2.97 -817.98 -2.43 -15.35 16 12 C 0.11 1.85 6.37 86.51 0.55 2.40 16 13 C -0.13 -3.29 5.26 30.82 0.16 -3.13 16 14 C -0.08 -2.26 1.73 -10.77 -0.02 -2.28 16 15 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 16 C 0.16 6.09 5.41 86.38 0.47 6.55 16 17 N -0.75 -34.87 5.12 -343.44 -1.76 -36.63 16 18 C -0.24 -13.78 10.47 84.03 0.88 -12.90 16 19 H 0.05 3.11 8.06 -2.91 -0.02 3.08 16 20 C -0.07 -4.15 5.50 84.86 0.47 -3.68 16 21 N -0.99 -64.16 13.97 21.65 0.30 -63.86 16 22 Si 0.96 44.50 27.74 68.60 1.90 46.40 16 23 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 24 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 25 H -0.24 -9.75 6.52 99.48 0.65 -9.10 16 26 C -0.09 -2.25 2.42 -10.70 -0.03 -2.28 16 27 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 28 C -0.14 -3.35 8.82 71.98 0.63 -2.72 16 29 C 0.12 2.74 5.72 86.38 0.49 3.23 16 30 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.10 1.09 7.40 -2.38 -0.02 1.07 16 34 H 0.12 0.83 8.11 -2.39 -0.02 0.81 16 35 H 0.09 0.08 8.14 -2.39 -0.02 0.06 16 36 H 0.08 0.50 8.07 -2.38 -0.02 0.48 16 37 H 0.09 0.35 6.44 -2.39 -0.02 0.34 16 38 H 0.16 1.10 7.86 -2.39 -0.02 1.08 16 39 H 0.10 2.08 6.98 -2.39 -0.02 2.06 16 40 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.11 1.31 5.93 -2.39 -0.01 1.29 16 42 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 43 H 0.08 2.05 7.15 -2.39 -0.02 2.04 16 44 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 45 H 0.03 1.16 6.14 -2.39 -0.01 1.14 16 46 H 0.37 15.68 4.70 -92.71 -0.44 15.24 16 47 H 0.26 15.89 8.31 -92.71 -0.77 15.12 16 48 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 49 H 0.05 1.40 6.30 -2.39 -0.02 1.39 16 50 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 51 H 0.08 1.93 7.01 -2.39 -0.02 1.92 16 52 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -91.13 408.88 3.55 -87.58 By element: Atomic # 1 Polarization: 25.58 SS G_CDS: 0.41 Total: 25.99 kcal Atomic # 6 Polarization: 8.44 SS G_CDS: 8.24 Total: 16.69 kcal Atomic # 7 Polarization: -122.01 SS G_CDS: -5.89 Total: -127.90 kcal Atomic # 8 Polarization: -47.64 SS G_CDS: -1.12 Total: -48.76 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 1.90 Total: 46.40 kcal Total: -91.13 3.55 -87.58 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184534041.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.892 kcal (2) G-P(sol) polarization free energy of solvation -91.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds