Wall clock time and date at job start Wed Apr 1 2020 01:21:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 113.99979 * 2 1 4 4 C 1.50698 * 109.47306 * 179.97438 * 3 2 1 5 5 O 1.21286 * 119.99858 * 0.02562 * 4 3 2 6 6 N 1.34775 * 120.00365 * 179.97438 * 4 3 2 7 7 C 1.46500 * 119.99872 * 0.02562 * 6 4 3 8 8 C 1.46503 * 120.00119 * 179.97438 * 6 4 3 9 9 C 1.50703 * 109.46719 * 90.00470 * 8 6 4 10 10 O 1.21274 * 119.99963 * 359.97438 * 9 8 6 11 11 N 1.34774 * 119.99778 * 180.02562 * 9 8 6 12 12 C 1.46925 * 120.63209 * 359.97438 * 11 9 8 13 13 C 1.53194 * 108.77821 * 233.59277 * 12 11 9 14 14 C 1.53042 * 109.30780 * 305.36133 * 13 12 11 15 15 H 1.08996 * 109.46195 * 301.34399 * 14 13 12 16 16 C 1.53004 * 109.45946 * 181.37014 * 14 13 12 17 17 N 1.46507 * 109.46745 * 65.00266 * 16 14 13 18 18 C 1.36933 * 119.99939 * 180.02562 * 17 16 14 19 19 H 1.07999 * 119.99918 * 359.97438 * 18 17 16 20 20 C 1.38813 * 120.00309 * 180.02562 * 18 17 16 21 21 N 1.31613 * 120.00165 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 119.99599 * 359.97438 * 20 18 17 23 23 H 1.48496 * 109.47145 * 90.00371 * 22 20 18 24 24 H 1.48505 * 109.46900 * 210.00407 * 22 20 18 25 25 H 1.48503 * 109.47161 * 330.00439 * 22 20 18 26 26 C 1.53044 * 109.53704 * 61.36844 * 14 13 12 27 27 H 1.09000 * 109.49597 * 58.58183 * 26 14 13 28 28 C 1.53002 * 109.49600 * 178.64588 * 26 14 13 29 29 C 1.46920 * 120.63160 * 179.72003 * 11 9 8 30 30 H 1.09002 * 109.47382 * 300.00227 * 1 2 3 31 31 H 1.09001 * 109.46938 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46926 * 60.00334 * 1 2 3 33 33 H 1.09000 * 109.47170 * 299.99544 * 3 2 1 34 34 H 1.09004 * 109.47235 * 59.99983 * 3 2 1 35 35 H 1.08999 * 109.46941 * 89.99336 * 7 6 4 36 36 H 1.08997 * 109.47043 * 209.99700 * 7 6 4 37 37 H 1.09002 * 109.46802 * 329.99539 * 7 6 4 38 38 H 1.08996 * 109.46871 * 210.00689 * 8 6 4 39 39 H 1.09007 * 109.47065 * 330.00767 * 8 6 4 40 40 H 1.09003 * 109.58870 * 353.37954 * 12 11 9 41 41 H 1.09003 * 109.58885 * 113.80242 * 12 11 9 42 42 H 1.08992 * 109.50071 * 65.31543 * 13 12 11 43 43 H 1.09001 * 109.49539 * 185.38355 * 13 12 11 44 44 H 1.08994 * 109.47253 * 184.99951 * 16 14 13 45 45 H 1.08997 * 109.47145 * 305.00609 * 16 14 13 46 46 H 0.97002 * 119.99853 * 0.02562 * 17 16 14 47 47 H 0.97004 * 119.99907 * 179.97438 * 21 20 18 48 48 H 1.08994 * 109.47066 * 60.00343 * 28 26 14 49 49 H 1.09004 * 109.46664 * 180.02562 * 28 26 14 50 50 H 1.09000 * 109.47126 * 300.00039 * 28 26 14 51 51 H 1.08995 * 109.59285 * 246.20087 * 29 11 9 52 52 H 1.09001 * 109.58369 * 6.62608 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1865 0.0006 5 8 4.0341 0.0915 0.0006 6 7 4.2765 2.2968 0.0002 7 6 3.6465 3.6194 -0.0003 8 6 5.7369 2.1811 0.0014 9 6 6.2387 2.1403 -1.4191 10 8 5.4537 2.2014 -2.3414 11 7 7.5597 2.0350 -1.6643 12 6 8.5229 1.9595 -0.5574 13 6 9.5853 3.0458 -0.7532 14 6 10.2109 2.8973 -2.1420 15 1 10.6531 1.9056 -2.2369 16 6 11.2964 3.9594 -2.3282 17 7 12.3881 3.7128 -1.3828 18 6 13.4780 4.5415 -1.3642 19 1 13.5330 5.3767 -2.0468 20 6 14.5127 4.3077 -0.4689 21 7 15.5600 5.1045 -0.4507 22 14 14.4178 2.8627 0.7112 23 1 15.0272 1.6657 0.0781 24 1 15.1544 3.1925 1.9578 25 1 12.9963 2.5813 1.0360 26 6 9.1315 3.0789 -3.2116 27 1 8.6718 4.0611 -3.1015 28 6 9.7640 2.9638 -4.6000 29 6 8.0636 1.9878 -3.0436 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 -0.8901 33 1 1.6887 1.8463 -0.8900 34 1 1.6886 1.8464 0.8900 35 1 3.4901 3.9477 1.0273 36 1 4.2937 4.3300 -0.5143 37 1 2.6868 3.5645 -0.5142 38 1 6.1690 3.0400 0.5149 39 1 6.0285 1.2656 0.5162 40 1 8.0059 2.1204 0.3886 41 1 8.9992 0.9790 -0.5537 42 1 9.1214 4.0282 -0.6662 43 1 10.3584 2.9398 0.0079 44 1 11.6804 3.9116 -3.3471 45 1 10.8734 4.9471 -2.1452 46 1 12.3388 2.9625 -0.7700 47 1 16.2829 4.9413 0.1752 48 1 10.2225 1.9811 -4.7101 49 1 8.9949 3.0937 -5.3615 50 1 10.5251 3.7351 -4.7176 51 1 8.5031 1.0097 -3.2389 52 1 7.2434 2.1675 -3.7386 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184534042.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:21:39 Heat of formation + Delta-G solvation = -119.048665 kcal Electronic energy + Delta-G solvation = -30764.776480 eV Core-core repulsion = 26571.225973 eV Total energy + Delta-G solvation = -4193.550507 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.71349 -40.75980 -39.25732 -38.39528 -36.74275 -36.47605 -35.05657 -33.61131 -32.32326 -31.30797 -29.27555 -28.59101 -27.75662 -27.19994 -26.09907 -25.13609 -23.75842 -22.71062 -21.54163 -20.81072 -19.90324 -19.60146 -18.54518 -18.35469 -17.82227 -17.29771 -17.04412 -16.71059 -16.47321 -16.27288 -15.98584 -15.72109 -15.60301 -15.28537 -15.08846 -14.79129 -14.59026 -14.43069 -14.11719 -14.00189 -13.98388 -13.81347 -13.41421 -13.24290 -13.16920 -13.14185 -12.97666 -12.91586 -12.82430 -12.66951 -12.35077 -12.15332 -11.97721 -11.83639 -11.62786 -11.53084 -11.24269 -11.13133 -10.95336 -10.90471 -10.78546 -9.79466 -9.68096 -9.25033 -8.00440 -5.33629 1.33231 1.38979 1.44107 1.51311 1.51907 1.63381 2.07297 2.50845 2.94827 3.31051 3.42659 3.52716 3.54745 3.72974 3.81285 3.98463 4.04805 4.05503 4.12834 4.17959 4.25442 4.28178 4.31974 4.38893 4.48908 4.49180 4.56037 4.62062 4.64938 4.71013 4.73428 4.79178 4.81580 4.85680 4.90606 4.99247 5.06541 5.11513 5.15348 5.23437 5.28160 5.35183 5.48933 5.58284 5.78244 5.96912 6.23194 6.25052 6.32932 6.99469 7.09161 7.10869 7.86886 8.07302 9.21190 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.019575 B = 0.002194 C = 0.002078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.078790 B =12761.293697 C =13469.451209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.410 6.410 3 C 0.049 3.951 4 C 0.508 3.492 5 O -0.574 6.574 6 N -0.599 5.599 7 C 0.071 3.929 8 C 0.096 3.904 9 C 0.496 3.504 10 O -0.578 6.578 11 N -0.607 5.607 12 C 0.107 3.893 13 C -0.124 4.124 14 C -0.085 4.085 15 H 0.074 0.926 16 C 0.159 3.841 17 N -0.754 5.754 18 C -0.233 4.233 19 H 0.052 0.948 20 C -0.067 4.067 21 N -0.986 5.986 22 Si 0.956 3.044 23 H -0.281 1.281 24 H -0.298 1.298 25 H -0.241 1.241 26 C -0.083 4.083 27 H 0.069 0.931 28 C -0.147 4.147 29 C 0.121 3.879 30 H 0.064 0.936 31 H 0.093 0.907 32 H 0.057 0.943 33 H 0.101 0.899 34 H 0.117 0.883 35 H 0.092 0.908 36 H 0.075 0.925 37 H 0.087 0.913 38 H 0.148 0.852 39 H 0.112 0.888 40 H 0.111 0.889 41 H 0.080 0.920 42 H 0.069 0.931 43 H 0.074 0.926 44 H 0.028 0.972 45 H 0.018 0.982 46 H 0.367 0.633 47 H 0.257 0.743 48 H 0.060 0.940 49 H 0.065 0.935 50 H 0.056 0.944 51 H 0.073 0.927 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.209 -5.625 2.795 32.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.329 6.329 3 C -0.030 4.030 4 C 0.297 3.703 5 O -0.453 6.453 6 N -0.332 5.332 7 C -0.070 4.070 8 C -0.030 4.030 9 C 0.284 3.716 10 O -0.458 6.458 11 N -0.340 5.340 12 C -0.015 4.015 13 C -0.162 4.162 14 C -0.104 4.104 15 H 0.093 0.907 16 C 0.033 3.967 17 N -0.400 5.400 18 C -0.364 4.364 19 H 0.070 0.930 20 C -0.258 4.258 21 N -0.637 5.637 22 Si 0.783 3.217 23 H -0.208 1.208 24 H -0.225 1.225 25 H -0.165 1.165 26 C -0.103 4.103 27 H 0.088 0.912 28 C -0.205 4.205 29 C -0.001 4.001 30 H 0.083 0.917 31 H 0.112 0.888 32 H 0.075 0.925 33 H 0.119 0.881 34 H 0.135 0.865 35 H 0.111 0.889 36 H 0.094 0.906 37 H 0.106 0.894 38 H 0.166 0.834 39 H 0.130 0.870 40 H 0.130 0.870 41 H 0.099 0.901 42 H 0.088 0.912 43 H 0.092 0.908 44 H 0.046 0.954 45 H 0.036 0.964 46 H 0.201 0.799 47 H 0.066 0.934 48 H 0.079 0.921 49 H 0.084 0.916 50 H 0.075 0.925 51 H 0.092 0.908 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -32.170 -6.145 2.248 32.829 hybrid contribution 0.811 -0.222 0.328 0.902 sum -31.359 -6.367 2.576 32.102 Atomic orbital electron populations 1.23044 0.78128 1.04193 1.01742 1.87964 1.22322 1.26861 1.95786 1.22399 0.88819 0.86718 1.05050 1.21020 0.90539 0.83663 0.75078 1.90697 1.75670 1.28390 1.50553 1.47517 1.05178 1.07687 1.72799 1.22180 0.99434 0.81386 1.04049 1.21523 0.81363 1.07228 0.92908 1.21652 0.81888 0.75189 0.92894 1.90648 1.55776 1.51846 1.47487 1.48231 1.05808 1.71842 1.08081 1.21990 0.90221 0.99761 0.89518 1.21906 0.97985 0.99448 0.96912 1.21308 0.94585 0.99141 0.95383 0.90742 1.20873 0.87256 0.96275 0.92267 1.42683 1.20015 1.33629 1.43679 1.19016 0.95809 1.06488 1.15135 0.93028 1.25554 0.96215 1.02074 1.01965 1.69898 1.10365 1.41933 1.41461 0.85400 0.79038 0.79113 0.78186 1.20767 1.22486 1.16529 1.21378 0.94624 0.98891 0.95368 0.91216 1.21823 1.00856 1.02507 0.95273 1.21700 0.96689 0.98914 0.82845 0.91722 0.88833 0.92463 0.88134 0.86536 0.88932 0.90625 0.89432 0.83432 0.86987 0.87044 0.90129 0.91224 0.90788 0.95410 0.96411 0.79913 0.93433 0.92069 0.91563 0.92457 0.90840 0.90273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 11.01 113.37 1.25 1.50 16 2 O -0.41 -8.35 10.24 -129.94 -1.33 -9.68 16 3 C 0.05 0.71 4.97 71.24 0.35 1.06 16 4 C 0.51 11.44 7.75 87.66 0.68 12.12 16 5 O -0.57 -19.00 16.08 15.99 0.26 -18.74 16 6 N -0.60 -10.03 2.36 -851.11 -2.01 -12.04 16 7 C 0.07 0.55 10.24 127.77 1.31 1.86 16 8 C 0.10 1.62 4.23 85.63 0.36 1.98 16 9 C 0.50 11.79 7.77 87.66 0.68 12.47 16 10 O -0.58 -18.09 15.84 -3.01 -0.05 -18.14 16 11 N -0.61 -13.06 2.97 -818.15 -2.43 -15.49 16 12 C 0.11 1.88 6.34 86.36 0.55 2.43 16 13 C -0.12 -2.81 5.25 30.67 0.16 -2.65 16 14 C -0.09 -2.23 1.73 -10.76 -0.02 -2.25 16 15 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 16 C 0.16 5.70 5.41 86.38 0.47 6.16 16 17 N -0.75 -33.60 5.12 -343.44 -1.76 -35.36 16 18 C -0.23 -13.13 10.47 84.03 0.88 -12.25 16 19 H 0.05 3.22 8.06 -2.91 -0.02 3.20 16 20 C -0.07 -3.89 5.50 84.86 0.47 -3.42 16 21 N -0.99 -62.87 13.97 21.65 0.30 -62.57 16 22 Si 0.96 44.03 27.74 68.60 1.90 45.94 16 23 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 24 H -0.30 -14.01 7.11 99.48 0.71 -13.31 16 25 H -0.24 -9.56 6.52 99.48 0.65 -8.91 16 26 C -0.08 -1.89 2.43 -10.58 -0.03 -1.92 16 27 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 28 C -0.15 -3.22 8.82 71.98 0.63 -2.58 16 29 C 0.12 2.73 5.74 86.50 0.50 3.22 16 30 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.06 0.41 8.14 -2.38 -0.02 0.39 16 33 H 0.10 1.04 7.40 -2.39 -0.02 1.02 16 34 H 0.12 0.77 8.11 -2.39 -0.02 0.75 16 35 H 0.09 0.21 8.14 -2.39 -0.02 0.19 16 36 H 0.07 0.65 8.07 -2.39 -0.02 0.63 16 37 H 0.09 0.43 6.44 -2.39 -0.02 0.42 16 38 H 0.15 1.35 7.62 -2.39 -0.02 1.33 16 39 H 0.11 2.01 7.22 -2.38 -0.02 1.99 16 40 H 0.11 1.32 5.93 -2.39 -0.01 1.30 16 41 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 43 H 0.07 1.87 7.15 -2.39 -0.02 1.85 16 44 H 0.03 1.04 6.13 -2.39 -0.01 1.02 16 45 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 46 H 0.37 15.27 4.71 -92.71 -0.44 14.83 16 47 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 48 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 49 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 50 H 0.06 1.40 6.29 -2.39 -0.02 1.39 16 51 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 52 H 0.08 1.99 7.00 -2.39 -0.02 1.98 16 Total: -1.00 -86.69 408.87 3.55 -83.14 By element: Atomic # 1 Polarization: 24.80 SS G_CDS: 0.41 Total: 25.21 kcal Atomic # 6 Polarization: 9.48 SS G_CDS: 8.24 Total: 17.72 kcal Atomic # 7 Polarization: -119.56 SS G_CDS: -5.89 Total: -125.45 kcal Atomic # 8 Polarization: -45.44 SS G_CDS: -1.12 Total: -46.56 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 1.90 Total: 45.94 kcal Total: -86.69 3.55 -83.14 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184534042.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.906 kcal (2) G-P(sol) polarization free energy of solvation -86.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds