Wall clock time and date at job start Wed Apr 1 2020 01:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42892 * 113.99739 * 2 1 4 4 C 1.53001 * 109.47198 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.47284 * 180.02562 * 4 3 2 6 6 C 1.53000 * 109.46871 * 180.02562 * 5 4 3 7 7 H 1.09006 * 109.47299 * 55.00059 * 6 5 4 8 8 C 1.52997 * 109.47247 * 294.99936 * 6 5 4 9 9 C 1.50700 * 109.47003 * 174.99925 * 6 5 4 10 10 O 1.21284 * 119.99802 * 359.97438 * 9 6 5 11 11 N 1.34776 * 120.00311 * 179.97438 * 9 6 5 12 12 C 1.47422 * 125.64498 * 359.97438 * 11 9 6 13 13 C 1.54912 * 104.83500 * 155.91583 * 12 11 9 14 14 C 1.55162 * 101.57717 * 37.00946 * 13 12 11 15 15 H 1.09002 * 110.72059 * 82.86237 * 14 13 12 16 16 N 1.46904 * 110.71777 * 205.95855 * 14 13 12 17 17 C 1.46900 * 110.99872 * 271.15451 * 16 14 13 18 18 C 1.50700 * 109.47094 * 179.97438 * 17 16 14 19 19 O 1.21301 * 119.99887 * 0.02562 * 18 17 16 20 20 N 1.34775 * 120.00226 * 179.97438 * 18 17 16 21 21 C 1.37095 * 120.00195 * 179.97438 * 20 18 17 22 22 H 1.08003 * 119.99958 * 0.02562 * 21 20 18 23 23 C 1.38946 * 120.00102 * 180.02562 * 21 20 18 24 24 N 1.31409 * 120.00162 * 180.02562 * 23 21 20 25 25 Si 1.86799 * 120.00188 * 0.02562 * 23 21 20 26 26 H 1.48497 * 109.47292 * 89.99230 * 25 23 21 27 27 H 1.48497 * 109.47320 * 209.99953 * 25 23 21 28 28 H 1.48506 * 109.46565 * 329.99662 * 25 23 21 29 29 C 1.47018 * 125.65427 * 180.02562 * 11 9 6 30 30 H 1.08996 * 109.47767 * 59.99834 * 1 2 3 31 31 H 1.09002 * 109.46920 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47271 * 299.99011 * 1 2 3 33 33 H 1.09006 * 109.47395 * 60.00777 * 3 2 1 34 34 H 1.09000 * 109.47474 * 300.00094 * 3 2 1 35 35 H 1.09011 * 109.46784 * 60.00288 * 4 3 2 36 36 H 1.08999 * 109.47434 * 300.00356 * 4 3 2 37 37 H 1.08994 * 109.47210 * 60.00392 * 5 4 3 38 38 H 1.09000 * 109.47190 * 299.99885 * 5 4 3 39 39 H 1.09002 * 109.47442 * 60.00058 * 8 6 5 40 40 H 1.08999 * 109.47571 * 180.02562 * 8 6 5 41 41 H 1.09006 * 109.47072 * 300.00263 * 8 6 5 42 42 H 1.09003 * 110.37241 * 37.07952 * 12 11 9 43 43 H 1.08998 * 110.46196 * 274.80100 * 12 11 9 44 44 H 1.08999 * 111.00244 * 278.93675 * 13 12 11 45 45 H 1.08996 * 111.00556 * 155.07846 * 13 12 11 46 46 H 1.00897 * 110.99650 * 147.20225 * 16 14 13 47 47 H 1.08993 * 109.47330 * 300.00361 * 17 16 14 48 48 H 1.09000 * 109.46965 * 60.00477 * 17 16 14 49 49 H 0.96998 * 119.99895 * 0.02562 * 20 18 17 50 50 H 0.96997 * 120.00440 * 179.97438 * 24 23 21 51 51 H 1.09001 * 109.88087 * 61.59317 * 29 11 9 52 52 H 1.09003 * 109.87911 * 300.43469 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1577 2.5824 0.0000 6 6 5.6829 2.4616 -0.0013 7 1 5.9979 1.8460 -0.8439 8 6 6.1442 1.8126 1.3051 9 6 6.2953 3.8330 -0.1245 10 8 5.5820 4.8107 -0.2040 11 7 7.6356 3.9731 -0.1464 12 6 8.6157 2.8754 -0.0579 13 6 9.8962 3.4320 -0.7291 14 6 9.8694 4.9139 -0.2700 15 1 10.2925 5.0157 0.7294 16 7 10.5879 5.7671 -1.2259 17 6 12.0140 5.8550 -0.8845 18 6 12.7167 6.7359 -1.8852 19 8 12.0909 7.2412 -2.7932 20 7 14.0402 6.9631 -1.7707 21 6 14.6796 7.7640 -2.6813 22 1 14.1226 8.2133 -3.4903 23 6 16.0442 7.9978 -2.5636 24 7 16.6569 8.7659 -3.4362 25 14 17.0078 7.2202 -1.1649 26 1 17.5237 5.8960 -1.5954 27 1 18.1467 8.1002 -0.7992 28 1 16.1188 7.0464 0.0119 29 6 8.3624 5.2459 -0.2614 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5137 0.8901 33 1 1.6886 1.8463 0.8901 34 1 1.6885 1.8464 -0.8900 35 1 3.8567 0.6439 -0.8910 36 1 3.8575 0.6436 0.8890 37 1 3.8364 3.1227 0.8904 38 1 3.8357 3.1239 -0.8895 39 1 5.7013 0.8206 1.3943 40 1 7.2308 1.7269 1.3045 41 1 5.8292 2.4282 2.1477 42 1 8.2546 1.9999 -0.5976 43 1 8.8125 2.6234 0.9841 44 1 9.8319 3.3580 -1.8147 45 1 10.7852 2.9235 -0.3562 46 1 10.1709 6.6845 -1.2760 47 1 12.1233 6.2793 0.1135 48 1 12.4548 4.8583 -0.9058 49 1 14.5406 6.5593 -1.0444 50 1 17.6095 8.9294 -3.3538 51 1 8.1284 5.8846 0.5903 52 1 8.0879 5.7470 -1.1897 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001186887598.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:52:21 Heat of formation + Delta-G solvation = -118.052290 kcal Electronic energy + Delta-G solvation = -29139.055379 eV Core-core repulsion = 24945.548078 eV Total energy + Delta-G solvation = -4193.507301 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.58848 -38.76517 -38.41890 -37.83889 -35.88547 -34.89333 -33.88269 -31.97644 -31.67605 -30.60374 -29.12369 -27.56698 -26.40254 -26.05735 -24.50743 -23.61425 -22.94324 -21.28484 -20.67791 -19.46798 -19.33689 -18.38413 -17.37393 -16.80376 -16.64908 -16.58819 -16.08694 -15.98808 -15.51962 -15.38072 -15.01723 -14.92645 -14.46592 -14.06834 -13.93640 -13.80338 -13.63912 -13.31593 -13.15667 -12.88797 -12.71443 -12.61855 -12.49955 -12.37701 -12.12854 -12.03533 -11.93897 -11.76468 -11.66509 -11.44109 -11.33540 -11.21646 -11.18955 -11.02055 -10.98232 -10.62049 -10.12008 -9.99902 -9.93869 -9.59928 -8.89625 -8.63816 -8.28618 -8.19986 -6.33144 -3.84864 2.41583 2.63914 2.99831 3.04552 3.13067 3.29691 3.70434 3.98603 4.05070 4.08245 4.30026 4.38532 4.45077 4.49443 4.66732 4.72118 4.75593 4.85706 4.88925 4.91382 4.96300 4.97925 5.03040 5.12178 5.15311 5.20161 5.21417 5.24569 5.28685 5.34093 5.44666 5.48957 5.53100 5.59581 5.64605 5.65812 5.72525 5.74869 5.86990 5.87806 5.92041 6.00139 6.08075 6.69686 7.00375 7.25197 7.44952 7.55544 7.93435 8.12083 8.57099 8.92700 9.39845 9.79613 10.79966 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.038360 B = 0.001474 C = 0.001449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.759292 B =18993.925725 C =19323.500375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.395 6.395 3 C 0.060 3.940 4 C -0.119 4.119 5 C -0.098 4.098 6 C -0.104 4.104 7 H 0.099 0.901 8 C -0.154 4.154 9 C 0.532 3.468 10 O -0.540 6.540 11 N -0.614 5.614 12 C 0.098 3.902 13 C -0.125 4.125 14 C 0.074 3.926 15 H 0.060 0.940 16 N -0.657 5.657 17 C 0.049 3.951 18 C 0.449 3.551 19 O -0.564 6.564 20 N -0.590 5.590 21 C -0.306 4.306 22 H 0.120 0.880 23 C 0.042 3.958 24 N -0.881 5.881 25 Si 0.880 3.120 26 H -0.270 1.270 27 H -0.277 1.277 28 H -0.270 1.270 29 C 0.107 3.893 30 H 0.041 0.959 31 H 0.085 0.915 32 H 0.041 0.959 33 H 0.050 0.950 34 H 0.050 0.950 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.071 0.929 40 H 0.067 0.933 41 H 0.060 0.940 42 H 0.079 0.921 43 H 0.072 0.928 44 H 0.091 0.909 45 H 0.083 0.917 46 H 0.355 0.645 47 H 0.047 0.953 48 H 0.088 0.912 49 H 0.370 0.630 50 H 0.274 0.726 51 H 0.068 0.932 52 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.884 -19.818 13.656 33.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.314 6.314 3 C -0.017 4.017 4 C -0.157 4.157 5 C -0.136 4.136 6 C -0.125 4.125 7 H 0.117 0.883 8 C -0.211 4.211 9 C 0.321 3.679 10 O -0.417 6.417 11 N -0.348 5.348 12 C -0.025 4.025 13 C -0.164 4.164 14 C -0.037 4.037 15 H 0.078 0.922 16 N -0.290 5.290 17 C -0.084 4.084 18 C 0.234 3.766 19 O -0.446 6.446 20 N -0.229 5.229 21 C -0.435 4.435 22 H 0.137 0.863 23 C -0.161 4.161 24 N -0.521 5.521 25 Si 0.706 3.294 26 H -0.196 1.196 27 H -0.202 1.202 28 H -0.196 1.196 29 C -0.017 4.017 30 H 0.060 0.940 31 H 0.104 0.896 32 H 0.059 0.941 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.090 0.910 38 H 0.093 0.907 39 H 0.090 0.910 40 H 0.086 0.914 41 H 0.079 0.921 42 H 0.098 0.902 43 H 0.090 0.910 44 H 0.109 0.891 45 H 0.101 0.899 46 H 0.175 0.825 47 H 0.064 0.936 48 H 0.106 0.894 49 H 0.203 0.797 50 H 0.084 0.916 51 H 0.086 0.914 52 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -24.375 -19.488 12.453 33.600 hybrid contribution 0.873 0.298 1.829 2.049 sum -23.502 -19.189 14.282 33.534 Atomic orbital electron populations 1.22741 0.80961 1.02760 1.00054 1.87858 1.19787 1.28267 1.95460 1.22561 0.94192 0.84501 1.00426 1.21579 0.92995 0.97522 1.03567 1.21303 0.92263 0.96112 1.03921 1.21228 0.96610 0.93813 1.00852 0.88311 1.21995 1.02234 1.01227 0.95685 1.20354 0.80263 0.91461 0.75868 1.90715 1.60037 1.40993 1.49935 1.48376 1.04996 1.08578 1.72890 1.22506 0.88864 0.90464 1.00682 1.22917 0.96379 0.94627 1.02489 1.22554 0.92098 0.94475 0.94564 0.92185 1.60145 1.01426 1.19007 1.48455 1.21752 0.89265 1.00632 0.96734 1.19674 0.82693 0.85946 0.88249 1.90581 1.65255 1.53366 1.35353 1.42194 1.07567 1.45712 1.27429 1.19439 0.92110 1.24217 1.07722 0.86263 1.25035 0.96373 0.97098 0.97578 1.69618 1.10678 1.36546 1.35209 0.86670 0.80658 0.80026 0.81999 1.19581 1.20177 1.19553 1.22032 0.90547 0.86303 1.02773 0.94021 0.89624 0.94066 0.93214 0.93151 0.90940 0.90726 0.91005 0.90740 0.91010 0.91409 0.92092 0.90235 0.91014 0.89069 0.89892 0.82462 0.93553 0.89359 0.79694 0.91584 0.91388 0.90054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.28 16 2 O -0.39 -3.27 10.70 -35.23 -0.38 -3.65 16 3 C 0.06 0.41 5.94 37.16 0.22 0.63 16 4 C -0.12 -0.75 5.34 -26.73 -0.14 -0.90 16 5 C -0.10 -0.73 4.03 -26.73 -0.11 -0.84 16 6 C -0.10 -0.77 2.07 -91.77 -0.19 -0.96 16 7 H 0.10 0.61 7.85 -51.93 -0.41 0.21 16 8 C -0.15 -0.86 8.76 37.16 0.33 -0.53 16 9 C 0.53 5.93 7.21 -10.99 -0.08 5.85 16 10 O -0.54 -8.16 16.25 5.55 0.09 -8.07 16 11 N -0.61 -6.20 3.32 -170.52 -0.57 -6.77 16 12 C 0.10 0.70 5.13 -2.53 -0.01 0.69 16 13 C -0.13 -1.11 6.75 -24.58 -0.17 -1.28 16 14 C 0.07 0.78 3.25 -65.88 -0.21 0.57 16 15 H 0.06 0.57 7.86 -51.93 -0.41 0.16 16 16 N -0.66 -9.47 5.95 -106.05 -0.63 -10.10 16 17 C 0.05 0.75 6.04 -4.98 -0.03 0.72 16 18 C 0.45 9.90 7.82 -10.99 -0.09 9.81 16 19 O -0.56 -14.93 15.78 5.54 0.09 -14.84 16 20 N -0.59 -13.74 5.09 -10.96 -0.06 -13.79 16 21 C -0.31 -8.58 10.16 -14.94 -0.15 -8.73 16 22 H 0.12 3.84 7.39 -52.48 -0.39 3.45 16 23 C 0.04 1.14 5.50 -17.47 -0.10 1.05 16 24 N -0.88 -25.55 13.96 55.50 0.77 -24.78 16 25 Si 0.88 19.03 27.74 -169.99 -4.71 14.31 16 26 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 27 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 28 H -0.27 -5.28 6.52 56.52 0.37 -4.91 16 29 C 0.11 1.19 6.39 -3.07 -0.02 1.18 16 30 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.04 0.19 8.14 -51.93 -0.42 -0.24 16 33 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.07 0.46 8.14 -51.92 -0.42 0.04 16 36 H 0.07 0.44 6.56 -51.93 -0.34 0.10 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.65 7.95 -51.93 -0.41 0.24 16 39 H 0.07 0.32 6.57 -51.93 -0.34 -0.03 16 40 H 0.07 0.33 4.99 -51.93 -0.26 0.07 16 41 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.08 0.45 7.36 -51.93 -0.38 0.07 16 43 H 0.07 0.40 7.07 -51.93 -0.37 0.04 16 44 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.35 5.43 8.10 -39.29 -0.32 5.11 16 47 H 0.05 0.62 8.08 -51.93 -0.42 0.20 16 48 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 49 H 0.37 7.51 5.76 -40.82 -0.24 7.27 16 50 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 51 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 52 H 0.08 1.06 7.95 -51.93 -0.41 0.65 16 LS Contribution 414.42 15.07 6.25 6.25 Total: -1.00 -35.24 414.42 -7.72 -42.96 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: -8.93 Total: 9.92 kcal Atomic # 6 Polarization: 8.19 SS G_CDS: 0.36 Total: 8.55 kcal Atomic # 7 Polarization: -54.96 SS G_CDS: -0.48 Total: -55.43 kcal Atomic # 8 Polarization: -26.36 SS G_CDS: -0.20 Total: -26.56 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -4.71 Total: 14.31 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -35.24 -7.72 -42.96 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186887598.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.090 kcal (2) G-P(sol) polarization free energy of solvation -35.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds