Wall clock time and date at job start Wed Apr 1 2020 01:52:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42892 * 113.99739 * 2 1 4 4 C 1.53001 * 109.47198 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.47284 * 180.02562 * 4 3 2 6 6 C 1.53000 * 109.46871 * 180.02562 * 5 4 3 7 7 H 1.09006 * 109.47299 * 55.00059 * 6 5 4 8 8 C 1.52997 * 109.47247 * 294.99936 * 6 5 4 9 9 C 1.50700 * 109.47003 * 174.99925 * 6 5 4 10 10 O 1.21284 * 119.99802 * 359.97438 * 9 6 5 11 11 N 1.34776 * 120.00311 * 179.97438 * 9 6 5 12 12 C 1.47422 * 125.64498 * 359.97438 * 11 9 6 13 13 C 1.54912 * 104.83500 * 155.91583 * 12 11 9 14 14 C 1.55162 * 101.57717 * 37.00946 * 13 12 11 15 15 H 1.09002 * 110.72059 * 82.86237 * 14 13 12 16 16 N 1.46904 * 110.71777 * 205.95855 * 14 13 12 17 17 C 1.46900 * 110.99872 * 271.15451 * 16 14 13 18 18 C 1.50700 * 109.47094 * 179.97438 * 17 16 14 19 19 O 1.21301 * 119.99887 * 0.02562 * 18 17 16 20 20 N 1.34775 * 120.00226 * 179.97438 * 18 17 16 21 21 C 1.37095 * 120.00195 * 179.97438 * 20 18 17 22 22 H 1.08003 * 119.99958 * 0.02562 * 21 20 18 23 23 C 1.38946 * 120.00102 * 180.02562 * 21 20 18 24 24 N 1.31409 * 120.00162 * 180.02562 * 23 21 20 25 25 Si 1.86799 * 120.00188 * 0.02562 * 23 21 20 26 26 H 1.48497 * 109.47292 * 89.99230 * 25 23 21 27 27 H 1.48497 * 109.47320 * 209.99953 * 25 23 21 28 28 H 1.48506 * 109.46565 * 329.99662 * 25 23 21 29 29 C 1.47018 * 125.65427 * 180.02562 * 11 9 6 30 30 H 1.08996 * 109.47767 * 59.99834 * 1 2 3 31 31 H 1.09002 * 109.46920 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47271 * 299.99011 * 1 2 3 33 33 H 1.09006 * 109.47395 * 60.00777 * 3 2 1 34 34 H 1.09000 * 109.47474 * 300.00094 * 3 2 1 35 35 H 1.09011 * 109.46784 * 60.00288 * 4 3 2 36 36 H 1.08999 * 109.47434 * 300.00356 * 4 3 2 37 37 H 1.08994 * 109.47210 * 60.00392 * 5 4 3 38 38 H 1.09000 * 109.47190 * 299.99885 * 5 4 3 39 39 H 1.09002 * 109.47442 * 60.00058 * 8 6 5 40 40 H 1.08999 * 109.47571 * 180.02562 * 8 6 5 41 41 H 1.09006 * 109.47072 * 300.00263 * 8 6 5 42 42 H 1.09003 * 110.37241 * 37.07952 * 12 11 9 43 43 H 1.08998 * 110.46196 * 274.80100 * 12 11 9 44 44 H 1.08999 * 111.00244 * 278.93675 * 13 12 11 45 45 H 1.08996 * 111.00556 * 155.07846 * 13 12 11 46 46 H 1.00897 * 110.99650 * 147.20225 * 16 14 13 47 47 H 1.08993 * 109.47330 * 300.00361 * 17 16 14 48 48 H 1.09000 * 109.46965 * 60.00477 * 17 16 14 49 49 H 0.96998 * 119.99895 * 0.02562 * 20 18 17 50 50 H 0.96997 * 120.00440 * 179.97438 * 24 23 21 51 51 H 1.09001 * 109.88087 * 61.59317 * 29 11 9 52 52 H 1.09003 * 109.87911 * 300.43469 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1577 2.5824 0.0000 6 6 5.6829 2.4616 -0.0013 7 1 5.9979 1.8460 -0.8439 8 6 6.1442 1.8126 1.3051 9 6 6.2953 3.8330 -0.1245 10 8 5.5820 4.8107 -0.2040 11 7 7.6356 3.9731 -0.1464 12 6 8.6157 2.8754 -0.0579 13 6 9.8962 3.4320 -0.7291 14 6 9.8694 4.9139 -0.2700 15 1 10.2925 5.0157 0.7294 16 7 10.5879 5.7671 -1.2259 17 6 12.0140 5.8550 -0.8845 18 6 12.7167 6.7359 -1.8852 19 8 12.0909 7.2412 -2.7932 20 7 14.0402 6.9631 -1.7707 21 6 14.6796 7.7640 -2.6813 22 1 14.1226 8.2133 -3.4903 23 6 16.0442 7.9978 -2.5636 24 7 16.6569 8.7659 -3.4362 25 14 17.0078 7.2202 -1.1649 26 1 17.5237 5.8960 -1.5954 27 1 18.1467 8.1002 -0.7992 28 1 16.1188 7.0464 0.0119 29 6 8.3624 5.2459 -0.2614 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5137 0.8901 33 1 1.6886 1.8463 0.8901 34 1 1.6885 1.8464 -0.8900 35 1 3.8567 0.6439 -0.8910 36 1 3.8575 0.6436 0.8890 37 1 3.8364 3.1227 0.8904 38 1 3.8357 3.1239 -0.8895 39 1 5.7013 0.8206 1.3943 40 1 7.2308 1.7269 1.3045 41 1 5.8292 2.4282 2.1477 42 1 8.2546 1.9999 -0.5976 43 1 8.8125 2.6234 0.9841 44 1 9.8319 3.3580 -1.8147 45 1 10.7852 2.9235 -0.3562 46 1 10.1709 6.6845 -1.2760 47 1 12.1233 6.2793 0.1135 48 1 12.4548 4.8583 -0.9058 49 1 14.5406 6.5593 -1.0444 50 1 17.6095 8.9294 -3.3538 51 1 8.1284 5.8846 0.5903 52 1 8.0879 5.7470 -1.1897 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001186887598.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:52:20 Heat of formation + Delta-G solvation = -146.272616 kcal Electronic energy + Delta-G solvation = -29140.279104 eV Core-core repulsion = 24945.548078 eV Total energy + Delta-G solvation = -4194.731026 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.39446 -40.31222 -39.13899 -38.76193 -36.54647 -36.23520 -35.59561 -33.74524 -32.60231 -31.38922 -30.04194 -28.14052 -27.74642 -26.60739 -25.65046 -24.83265 -23.56159 -21.89911 -21.51372 -21.27015 -20.30068 -20.06861 -18.18622 -17.69018 -17.50166 -17.18784 -17.17141 -16.95391 -16.76897 -16.50366 -16.10433 -15.62195 -15.59742 -15.32608 -14.96431 -14.71057 -14.56826 -14.41110 -14.29231 -14.10952 -13.83432 -13.52013 -13.47971 -13.23998 -13.12042 -12.88205 -12.83050 -12.64387 -12.41635 -12.40254 -12.25642 -12.11899 -12.01142 -11.96001 -11.83504 -11.66799 -11.57130 -11.50183 -10.80123 -10.62283 -10.43656 -10.24254 -9.71438 -9.38451 -8.40405 -6.01914 1.31406 1.37606 1.46461 1.58921 1.86906 1.96974 2.24625 2.72771 2.81852 3.16065 3.31327 3.41228 3.65352 3.70830 3.86804 3.90725 4.13359 4.15889 4.17795 4.23556 4.31708 4.34497 4.39971 4.46604 4.50641 4.50744 4.52931 4.59094 4.64387 4.65947 4.69133 4.77487 4.83497 4.85173 4.87838 4.95117 5.03159 5.07830 5.17785 5.24376 5.32243 5.36358 5.43175 5.53800 5.90920 6.04916 6.21304 6.27612 6.49563 6.60513 6.89027 7.10633 7.40604 7.97885 8.77420 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.038360 B = 0.001474 C = 0.001449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.759292 B =18993.925725 C =19323.500375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.416 6.416 3 C 0.056 3.944 4 C -0.110 4.110 5 C -0.093 4.093 6 C -0.097 4.097 7 H 0.117 0.883 8 C -0.149 4.149 9 C 0.523 3.477 10 O -0.592 6.592 11 N -0.614 5.614 12 C 0.098 3.902 13 C -0.123 4.123 14 C 0.080 3.920 15 H 0.086 0.914 16 N -0.678 5.678 17 C 0.065 3.935 18 C 0.446 3.554 19 O -0.618 6.618 20 N -0.589 5.589 21 C -0.331 4.331 22 H 0.053 0.947 23 C -0.015 4.015 24 N -0.936 5.936 25 Si 0.967 3.033 26 H -0.256 1.256 27 H -0.277 1.277 28 H -0.228 1.228 29 C 0.106 3.894 30 H 0.046 0.954 31 H 0.097 0.903 32 H 0.048 0.952 33 H 0.053 0.947 34 H 0.048 0.952 35 H 0.075 0.925 36 H 0.084 0.916 37 H 0.061 0.939 38 H 0.054 0.946 39 H 0.089 0.911 40 H 0.081 0.919 41 H 0.051 0.949 42 H 0.101 0.899 43 H 0.101 0.899 44 H 0.068 0.932 45 H 0.109 0.891 46 H 0.344 0.656 47 H 0.081 0.919 48 H 0.121 0.879 49 H 0.391 0.609 50 H 0.279 0.721 51 H 0.065 0.935 52 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.113 -23.683 17.384 37.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.335 6.335 3 C -0.021 4.021 4 C -0.147 4.147 5 C -0.131 4.131 6 C -0.118 4.118 7 H 0.135 0.865 8 C -0.206 4.206 9 C 0.313 3.687 10 O -0.473 6.473 11 N -0.347 5.347 12 C -0.024 4.024 13 C -0.161 4.161 14 C -0.030 4.030 15 H 0.104 0.896 16 N -0.311 5.311 17 C -0.067 4.067 18 C 0.234 3.766 19 O -0.502 6.502 20 N -0.231 5.231 21 C -0.461 4.461 22 H 0.071 0.929 23 C -0.213 4.213 24 N -0.577 5.577 25 Si 0.786 3.214 26 H -0.180 1.180 27 H -0.202 1.202 28 H -0.151 1.151 29 C -0.018 4.018 30 H 0.065 0.935 31 H 0.115 0.885 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.094 0.906 36 H 0.103 0.897 37 H 0.080 0.920 38 H 0.073 0.927 39 H 0.108 0.892 40 H 0.100 0.900 41 H 0.070 0.930 42 H 0.119 0.881 43 H 0.118 0.882 44 H 0.087 0.913 45 H 0.127 0.873 46 H 0.163 0.837 47 H 0.099 0.901 48 H 0.139 0.861 49 H 0.227 0.773 50 H 0.088 0.912 51 H 0.084 0.916 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -23.608 -23.406 16.206 36.984 hybrid contribution 0.504 1.578 0.539 1.742 sum -23.104 -21.828 16.745 35.925 Atomic orbital electron populations 1.22913 0.79736 1.03801 1.00690 1.87815 1.21278 1.28847 1.95590 1.22622 0.94624 0.84250 1.00575 1.21490 0.92533 0.96540 1.04139 1.21220 0.92767 0.96592 1.02530 1.21267 0.95983 0.91710 1.02815 0.86530 1.21998 1.03204 1.01590 0.93837 1.21124 0.80343 0.92376 0.74818 1.90688 1.61285 1.42923 1.52356 1.48504 1.05230 1.09036 1.71960 1.22767 0.87142 0.89875 1.02566 1.22933 0.98369 0.93419 1.01393 1.22622 0.90749 0.94704 0.94938 0.89605 1.60161 1.01324 1.18970 1.50640 1.21679 0.89027 1.00543 0.95439 1.21054 0.82169 0.85003 0.88332 1.90563 1.66400 1.55280 1.37980 1.42001 1.08206 1.45579 1.27307 1.19011 0.92805 1.26190 1.08052 0.92932 1.26145 0.96989 0.97112 1.01099 1.69811 1.11434 1.38393 1.38023 0.85343 0.78690 0.78922 0.78411 1.17997 1.20228 1.15135 1.21924 0.91623 0.87065 1.01173 0.93544 0.88454 0.93293 0.92840 0.93334 0.90648 0.89707 0.91993 0.92682 0.89247 0.90001 0.92970 0.88116 0.88154 0.91304 0.87281 0.83694 0.90099 0.86069 0.77322 0.91157 0.91628 0.93090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 11.01 113.37 1.25 1.49 16 2 O -0.42 -6.44 10.70 -148.98 -1.59 -8.03 16 3 C 0.06 0.73 5.94 71.98 0.43 1.15 16 4 C -0.11 -1.23 5.34 30.59 0.16 -1.07 16 5 C -0.09 -1.35 4.03 30.59 0.12 -1.22 16 6 C -0.10 -1.26 2.07 -11.54 -0.02 -1.28 16 7 H 0.12 1.12 7.85 -2.38 -0.02 1.11 16 8 C -0.15 -1.18 8.76 71.98 0.63 -0.55 16 9 C 0.52 11.38 7.21 87.66 0.63 12.01 16 10 O -0.59 -18.61 16.25 -3.04 -0.05 -18.66 16 11 N -0.61 -11.44 3.32 -811.81 -2.70 -14.13 16 12 C 0.10 1.02 5.13 86.86 0.45 1.46 16 13 C -0.12 -1.72 6.75 31.99 0.22 -1.51 16 14 C 0.08 1.47 3.25 46.10 0.15 1.62 16 15 H 0.09 1.22 7.86 -2.39 -0.02 1.20 16 16 N -0.68 -18.61 5.95 -489.45 -2.91 -21.52 16 17 C 0.07 1.80 6.04 85.56 0.52 2.32 16 18 C 0.45 19.57 7.82 87.66 0.69 20.25 16 19 O -0.62 -34.16 15.78 -3.09 -0.05 -34.20 16 20 N -0.59 -27.04 5.09 -306.98 -1.56 -28.60 16 21 C -0.33 -19.29 10.16 84.04 0.85 -18.44 16 22 H 0.05 3.68 7.39 -2.91 -0.02 3.66 16 23 C -0.01 -0.82 5.50 84.93 0.47 -0.36 16 24 N -0.94 -56.29 13.96 21.66 0.30 -55.99 16 25 Si 0.97 37.77 27.74 68.60 1.90 39.67 16 26 H -0.26 -9.41 7.11 99.48 0.71 -8.71 16 27 H -0.28 -10.84 7.11 99.48 0.71 -10.14 16 28 H -0.23 -7.32 6.52 99.48 0.65 -6.68 16 29 C 0.11 2.32 6.39 86.73 0.55 2.88 16 30 H 0.05 0.39 8.14 -2.39 -0.02 0.38 16 31 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 33 H 0.05 0.64 8.14 -2.38 -0.02 0.62 16 34 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 36 H 0.08 0.79 6.56 -2.39 -0.02 0.78 16 37 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.05 1.00 7.95 -2.39 -0.02 0.98 16 39 H 0.09 0.43 6.57 -2.39 -0.02 0.42 16 40 H 0.08 0.42 4.99 -2.39 -0.01 0.41 16 41 H 0.05 0.53 8.14 -2.38 -0.02 0.51 16 42 H 0.10 0.67 7.36 -2.39 -0.02 0.66 16 43 H 0.10 0.56 7.07 -2.39 -0.02 0.55 16 44 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 45 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 46 H 0.34 10.66 8.10 -89.70 -0.73 9.93 16 47 H 0.08 1.75 8.08 -2.39 -0.02 1.74 16 48 H 0.12 2.64 8.14 -2.39 -0.02 2.62 16 49 H 0.39 14.51 5.76 -92.71 -0.53 13.98 16 50 H 0.28 15.31 8.31 -92.71 -0.77 14.54 16 51 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 52 H 0.05 1.42 7.95 -2.39 -0.02 1.40 16 Total: -1.00 -85.68 414.42 0.04 -85.64 By element: Atomic # 1 Polarization: 37.46 SS G_CDS: -0.40 Total: 37.06 kcal Atomic # 6 Polarization: 11.68 SS G_CDS: 7.09 Total: 18.77 kcal Atomic # 7 Polarization: -113.38 SS G_CDS: -6.87 Total: -120.25 kcal Atomic # 8 Polarization: -59.21 SS G_CDS: -1.69 Total: -60.90 kcal Atomic # 14 Polarization: 37.77 SS G_CDS: 1.90 Total: 39.67 kcal Total: -85.68 0.04 -85.64 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186887598.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.629 kcal (2) G-P(sol) polarization free energy of solvation -85.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds