Wall clock time and date at job start Wed Apr 1 2020 00:09:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47550 * 2 1 4 4 O 1.42904 * 109.46973 * 120.00153 * 2 1 3 5 5 C 1.42894 * 113.99990 * 149.99689 * 4 2 1 6 6 C 1.52998 * 109.47199 * 179.97438 * 5 4 2 7 7 C 1.50705 * 109.47342 * 179.97438 * 6 5 4 8 8 O 1.21274 * 119.99599 * 0.02562 * 7 6 5 9 9 N 1.34778 * 119.99784 * 180.02562 * 7 6 5 10 10 C 1.47015 * 125.65143 * 0.04299 * 9 7 6 11 11 C 1.54371 * 107.29098 * 178.87253 * 10 9 7 12 12 C 1.55162 * 102.91701 * 337.86459 * 11 10 9 13 13 H 1.09005 * 111.00035 * 277.35745 * 12 11 10 14 14 N 1.46902 * 111.00530 * 153.54845 * 12 11 10 15 15 C 1.46902 * 110.99832 * 61.13669 * 14 12 11 16 16 C 1.46897 * 111.00177 * 185.09216 * 14 12 11 17 17 C 1.50694 * 109.46913 * 169.99603 * 16 14 12 18 18 O 1.21292 * 120.00407 * 0.02562 * 17 16 14 19 19 N 1.34779 * 119.99626 * 180.02562 * 17 16 14 20 20 C 1.37103 * 119.99931 * 180.27570 * 19 17 16 21 21 H 1.07997 * 119.99616 * 359.72830 * 20 19 17 22 22 C 1.38953 * 120.00267 * 179.72479 * 20 19 17 23 23 N 1.31405 * 120.00224 * 180.02562 * 22 20 19 24 24 Si 1.86799 * 119.99492 * 0.02562 * 22 20 19 25 25 H 1.48495 * 109.47226 * 90.00279 * 24 22 20 26 26 H 1.48503 * 109.46920 * 209.99717 * 24 22 20 27 27 H 1.48497 * 109.47721 * 329.99880 * 24 22 20 28 28 C 1.47428 * 125.64431 * 180.02562 * 9 7 6 29 29 H 1.09002 * 109.46601 * 300.00267 * 1 2 3 30 30 H 1.09005 * 109.46680 * 59.99951 * 1 2 3 31 31 H 1.08999 * 109.47278 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47172 * 240.00182 * 2 1 3 33 33 H 1.08999 * 109.47311 * 300.00455 * 3 2 1 34 34 H 1.09007 * 109.47155 * 59.99525 * 3 2 1 35 35 H 1.08990 * 109.47752 * 179.97438 * 3 2 1 36 36 H 1.09009 * 109.47240 * 60.00151 * 5 4 2 37 37 H 1.08992 * 109.47533 * 300.00083 * 5 4 2 38 38 H 1.09001 * 109.46956 * 60.00637 * 6 5 4 39 39 H 1.09002 * 109.47815 * 300.00471 * 6 5 4 40 40 H 1.09000 * 109.88364 * 298.32169 * 10 9 7 41 41 H 1.09005 * 109.88112 * 59.48940 * 10 9 7 42 42 H 1.09000 * 110.75868 * 219.50037 * 11 10 9 43 43 H 1.08999 * 110.70771 * 96.20109 * 11 10 9 44 44 H 1.09003 * 109.46677 * 189.99463 * 15 14 12 45 45 H 1.08995 * 109.47182 * 309.99165 * 15 14 12 46 46 H 1.08993 * 109.47189 * 69.99911 * 15 14 12 47 47 H 1.08998 * 109.46614 * 49.99976 * 16 14 12 48 48 H 1.08994 * 109.46923 * 290.00044 * 16 14 12 49 49 H 0.96996 * 120.00140 * 0.02562 * 19 17 16 50 50 H 0.96998 * 120.00128 * 180.02562 * 23 22 20 51 51 H 1.08998 * 110.36815 * 85.32376 * 28 9 7 52 52 H 1.08998 * 110.36607 * 323.00170 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 3.2659 -1.3246 0.9886 6 6 3.6759 -2.0082 2.2945 7 6 5.0041 -2.6952 2.1065 8 8 5.5673 -2.6427 1.0338 9 7 5.5657 -3.3679 3.1305 10 6 4.9942 -3.5116 4.4773 11 6 5.9689 -4.3824 5.2988 12 6 6.7562 -5.1493 4.2035 13 1 6.2006 -6.0228 3.8623 14 7 8.0903 -5.5323 4.6848 15 6 7.9942 -6.4240 5.8482 16 6 8.8796 -6.1508 3.6113 17 6 10.3088 -6.3049 4.0637 18 8 10.6374 -5.9364 5.1716 19 7 11.2219 -6.8524 3.2372 20 6 12.5209 -6.9979 3.6509 21 1 12.8134 -6.6698 4.6373 22 6 13.4611 -7.5675 2.8009 23 7 14.7060 -7.7074 3.1976 24 14 12.9551 -8.1344 1.0945 25 1 13.1264 -7.0176 0.1308 26 1 13.8053 -9.2796 0.6810 27 1 11.5316 -8.5566 1.1148 28 6 6.8549 -4.0816 3.0853 29 1 -0.3632 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.6768 1.9563 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 3.1300 1.4425 0.0005 36 1 4.0200 -0.5875 0.7125 37 1 3.1808 -2.0707 0.1987 38 1 2.9221 -2.7453 2.5710 39 1 3.7612 -1.2618 3.0843 40 1 4.8903 -2.5314 4.9425 41 1 4.0219 -4.0007 4.4172 42 1 5.4225 -5.0760 5.9379 43 1 6.6391 -3.7581 5.8897 44 1 8.9818 -6.5499 6.2920 45 1 7.3179 -5.9894 6.5843 46 1 7.6117 -7.3943 5.5317 47 1 8.8455 -5.5179 2.7245 48 1 8.4657 -7.1308 3.3744 49 1 10.9592 -7.1468 2.3511 50 1 15.3624 -8.1047 2.6041 51 1 7.6763 -3.3945 3.2880 52 1 6.9899 -4.5598 2.1151 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188982548.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:09:20 Heat of formation + Delta-G solvation = -105.520015 kcal Electronic energy + Delta-G solvation = -29726.270726 eV Core-core repulsion = 25533.306865 eV Total energy + Delta-G solvation = -4192.963861 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.47295 -39.08995 -38.60284 -37.77578 -35.59483 -33.89241 -33.72615 -31.71103 -31.60957 -30.74296 -29.02205 -28.05740 -27.65912 -25.18055 -24.66017 -23.17869 -22.73229 -21.74157 -20.33367 -19.50047 -19.22686 -18.24316 -17.81076 -17.01507 -16.66985 -16.35756 -15.97448 -15.39866 -15.33632 -15.01187 -14.82978 -14.59825 -14.54275 -14.02758 -13.89994 -13.66568 -13.31659 -13.13695 -13.08474 -13.05453 -12.74855 -12.68849 -12.61189 -12.41954 -12.19460 -12.12404 -11.86734 -11.74968 -11.57399 -11.51622 -11.38914 -11.15844 -11.07853 -11.04712 -10.87470 -10.58852 -10.12676 -9.97320 -9.93751 -9.54014 -8.90383 -8.62985 -8.18420 -8.02432 -6.30845 -3.82173 2.36179 2.50279 3.03350 3.08382 3.16198 3.32949 3.72873 3.84608 4.10944 4.12464 4.37401 4.41843 4.50164 4.57405 4.65231 4.72229 4.75566 4.81003 4.85307 5.02811 5.07439 5.11916 5.16514 5.21593 5.22575 5.31140 5.36171 5.40805 5.43799 5.45093 5.50644 5.55975 5.60501 5.68515 5.74163 5.75510 5.79145 5.79700 5.80567 5.90715 5.98757 6.01797 6.46633 6.84337 7.05297 7.18924 7.26095 7.58414 7.87393 8.14676 8.60305 8.95474 9.42760 9.83329 10.82191 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.016202 B = 0.001892 C = 0.001741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.762236 B =14792.473432 C =16077.057108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.082 3.918 3 C -0.176 4.176 4 O -0.387 6.387 5 C 0.077 3.923 6 C -0.133 4.133 7 C 0.533 3.467 8 O -0.541 6.541 9 N -0.617 5.617 10 C 0.101 3.899 11 C -0.123 4.123 12 C 0.068 3.932 13 H 0.055 0.945 14 N -0.507 5.507 15 C 0.022 3.978 16 C 0.039 3.961 17 C 0.454 3.546 18 O -0.559 6.559 19 N -0.591 5.591 20 C -0.304 4.304 21 H 0.120 0.880 22 C 0.042 3.958 23 N -0.881 5.881 24 Si 0.878 3.122 25 H -0.270 1.270 26 H -0.277 1.277 27 H -0.270 1.270 28 C 0.112 3.888 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.101 0.899 39 H 0.102 0.898 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.082 0.918 43 H 0.093 0.907 44 H 0.099 0.901 45 H 0.062 0.938 46 H 0.017 0.983 47 H 0.090 0.910 48 H 0.050 0.950 49 H 0.370 0.630 50 H 0.273 0.727 51 H 0.085 0.915 52 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.677 11.153 -3.444 31.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.024 3.976 3 C -0.234 4.234 4 O -0.306 6.306 5 C 0.000 4.000 6 C -0.173 4.173 7 C 0.321 3.679 8 O -0.418 6.418 9 N -0.351 5.351 10 C -0.022 4.022 11 C -0.161 4.161 12 C -0.042 4.042 13 H 0.073 0.927 14 N -0.231 5.231 15 C -0.126 4.126 16 C -0.092 4.092 17 C 0.240 3.760 18 O -0.441 6.441 19 N -0.230 5.230 20 C -0.433 4.433 21 H 0.138 0.862 22 C -0.161 4.161 23 N -0.521 5.521 24 Si 0.705 3.295 25 H -0.195 1.195 26 H -0.202 1.202 27 H -0.195 1.195 28 C -0.011 4.011 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.119 0.881 39 H 0.120 0.880 40 H 0.092 0.908 41 H 0.088 0.912 42 H 0.101 0.899 43 H 0.111 0.889 44 H 0.118 0.882 45 H 0.081 0.919 46 H 0.036 0.964 47 H 0.108 0.892 48 H 0.068 0.932 49 H 0.203 0.797 50 H 0.084 0.916 51 H 0.103 0.897 52 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -28.813 11.830 -3.047 31.296 hybrid contribution -0.453 -1.313 -1.864 2.324 sum -29.266 10.517 -4.912 31.484 Atomic orbital electron populations 1.21868 0.93543 1.02716 1.02544 1.22078 0.94922 0.92487 0.88091 1.22308 1.01790 0.96696 1.02593 1.87838 1.36632 1.70154 1.36020 1.22148 0.85518 0.96042 0.96251 1.21433 0.94788 1.01185 0.99928 1.20047 0.86596 0.78432 0.82803 1.90740 1.64504 1.61096 1.25471 1.48399 1.22351 1.52644 1.11754 1.22113 0.97322 1.00542 0.82219 1.22725 0.97472 0.98647 0.97282 1.22796 0.90393 0.96323 0.94688 0.92679 1.61624 1.11327 1.43599 1.06553 1.22573 1.04679 0.92828 0.92492 1.21983 0.94148 0.98395 0.94704 1.19564 0.86080 0.83741 0.86664 1.90519 1.80310 1.52439 1.20840 1.42211 1.09693 1.56026 1.15080 1.19422 0.81983 1.38276 1.03626 0.86236 1.25027 0.95166 0.97560 0.98333 1.69616 1.01842 1.43824 1.36819 0.86691 0.78604 0.79492 0.84721 1.19545 1.20191 1.19550 1.22290 0.85574 0.94168 0.99052 0.91761 0.91230 0.91991 0.92076 0.91612 0.91747 0.92323 0.92379 0.92415 0.88096 0.88000 0.90838 0.91182 0.89897 0.88854 0.88212 0.91904 0.96414 0.89202 0.93171 0.79725 0.91618 0.89694 0.90367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.56 37.16 0.36 -0.48 16 2 C 0.08 0.58 3.34 -26.73 -0.09 0.49 16 3 C -0.18 -1.12 9.53 37.16 0.35 -0.76 16 4 O -0.39 -3.48 9.99 -35.23 -0.35 -3.83 16 5 C 0.08 0.70 5.04 37.16 0.19 0.89 16 6 C -0.13 -1.09 5.26 -27.88 -0.15 -1.24 16 7 C 0.53 6.11 7.85 -10.98 -0.09 6.03 16 8 O -0.54 -8.32 16.24 5.56 0.09 -8.23 16 9 N -0.62 -6.50 3.33 -170.48 -0.57 -7.07 16 10 C 0.10 0.75 6.49 -3.04 -0.02 0.73 16 11 C -0.12 -1.05 5.30 -24.87 -0.13 -1.19 16 12 C 0.07 0.77 2.71 -65.55 -0.18 0.59 16 13 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 14 N -0.51 -7.57 4.40 -233.74 -1.03 -8.60 16 15 C 0.02 0.31 9.08 60.07 0.55 0.86 16 16 C 0.04 0.65 5.33 -4.98 -0.03 0.62 16 17 C 0.45 10.15 7.54 -10.99 -0.08 10.07 16 18 O -0.56 -14.55 13.88 5.55 0.08 -14.47 16 19 N -0.59 -14.04 5.09 -10.96 -0.06 -14.10 16 20 C -0.30 -8.58 10.16 -14.93 -0.15 -8.73 16 21 H 0.12 3.84 7.39 -52.49 -0.39 3.45 16 22 C 0.04 1.16 5.50 -17.47 -0.10 1.06 16 23 N -0.88 -25.75 13.96 55.50 0.77 -24.97 16 24 Si 0.88 19.52 27.74 -169.99 -4.71 14.81 16 25 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 26 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 27 H -0.27 -5.48 6.52 56.52 0.37 -5.11 16 28 C 0.11 1.36 5.38 -2.52 -0.01 1.35 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.41 7.79 -51.93 -0.40 0.01 16 33 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.06 0.41 8.14 -51.92 -0.42 -0.01 16 35 H 0.06 0.41 7.87 -51.93 -0.41 0.00 16 36 H 0.06 0.57 7.83 -51.92 -0.41 0.16 16 37 H 0.06 0.55 8.04 -51.93 -0.42 0.13 16 38 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.08 0.57 7.88 -51.93 -0.41 0.16 16 43 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 44 H 0.10 1.81 6.01 -51.93 -0.31 1.50 16 45 H 0.06 0.73 6.72 -51.93 -0.35 0.38 16 46 H 0.02 0.23 8.06 -51.93 -0.42 -0.19 16 47 H 0.09 1.35 6.72 -51.93 -0.35 1.00 16 48 H 0.05 0.74 8.06 -51.93 -0.42 0.32 16 49 H 0.37 7.80 5.76 -40.82 -0.24 7.56 16 50 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 51 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 52 H 0.08 1.01 7.68 -51.93 -0.40 0.62 16 LS Contribution 415.23 15.07 6.26 6.26 Total: -1.00 -34.34 415.23 -8.25 -42.59 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: -9.16 Total: 7.31 kcal Atomic # 6 Polarization: 9.87 SS G_CDS: 0.42 Total: 10.29 kcal Atomic # 7 Polarization: -53.86 SS G_CDS: -0.88 Total: -54.73 kcal Atomic # 8 Polarization: -26.34 SS G_CDS: -0.18 Total: -26.53 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -4.71 Total: 14.81 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -34.34 -8.25 -42.59 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188982548.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.929 kcal (2) G-P(sol) polarization free energy of solvation -34.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds