Wall clock time and date at job start Wed Apr 1 2020 00:09:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47550 * 2 1 4 4 O 1.42904 * 109.46973 * 120.00153 * 2 1 3 5 5 C 1.42894 * 113.99990 * 149.99689 * 4 2 1 6 6 C 1.52998 * 109.47199 * 179.97438 * 5 4 2 7 7 C 1.50705 * 109.47342 * 179.97438 * 6 5 4 8 8 O 1.21274 * 119.99599 * 0.02562 * 7 6 5 9 9 N 1.34778 * 119.99784 * 180.02562 * 7 6 5 10 10 C 1.47015 * 125.65143 * 0.04299 * 9 7 6 11 11 C 1.54371 * 107.29098 * 178.87253 * 10 9 7 12 12 C 1.55162 * 102.91701 * 337.86459 * 11 10 9 13 13 H 1.09005 * 111.00035 * 277.35745 * 12 11 10 14 14 N 1.46902 * 111.00530 * 153.54845 * 12 11 10 15 15 C 1.46902 * 110.99832 * 61.13669 * 14 12 11 16 16 C 1.46897 * 111.00177 * 185.09216 * 14 12 11 17 17 C 1.50694 * 109.46913 * 169.99603 * 16 14 12 18 18 O 1.21292 * 120.00407 * 0.02562 * 17 16 14 19 19 N 1.34779 * 119.99626 * 180.02562 * 17 16 14 20 20 C 1.37103 * 119.99931 * 180.27570 * 19 17 16 21 21 H 1.07997 * 119.99616 * 359.72830 * 20 19 17 22 22 C 1.38953 * 120.00267 * 179.72479 * 20 19 17 23 23 N 1.31405 * 120.00224 * 180.02562 * 22 20 19 24 24 Si 1.86799 * 119.99492 * 0.02562 * 22 20 19 25 25 H 1.48495 * 109.47226 * 90.00279 * 24 22 20 26 26 H 1.48503 * 109.46920 * 209.99717 * 24 22 20 27 27 H 1.48497 * 109.47721 * 329.99880 * 24 22 20 28 28 C 1.47428 * 125.64431 * 180.02562 * 9 7 6 29 29 H 1.09002 * 109.46601 * 300.00267 * 1 2 3 30 30 H 1.09005 * 109.46680 * 59.99951 * 1 2 3 31 31 H 1.08999 * 109.47278 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47172 * 240.00182 * 2 1 3 33 33 H 1.08999 * 109.47311 * 300.00455 * 3 2 1 34 34 H 1.09007 * 109.47155 * 59.99525 * 3 2 1 35 35 H 1.08990 * 109.47752 * 179.97438 * 3 2 1 36 36 H 1.09009 * 109.47240 * 60.00151 * 5 4 2 37 37 H 1.08992 * 109.47533 * 300.00083 * 5 4 2 38 38 H 1.09001 * 109.46956 * 60.00637 * 6 5 4 39 39 H 1.09002 * 109.47815 * 300.00471 * 6 5 4 40 40 H 1.09000 * 109.88364 * 298.32169 * 10 9 7 41 41 H 1.09005 * 109.88112 * 59.48940 * 10 9 7 42 42 H 1.09000 * 110.75868 * 219.50037 * 11 10 9 43 43 H 1.08999 * 110.70771 * 96.20109 * 11 10 9 44 44 H 1.09003 * 109.46677 * 189.99463 * 15 14 12 45 45 H 1.08995 * 109.47182 * 309.99165 * 15 14 12 46 46 H 1.08993 * 109.47189 * 69.99911 * 15 14 12 47 47 H 1.08998 * 109.46614 * 49.99976 * 16 14 12 48 48 H 1.08994 * 109.46923 * 290.00044 * 16 14 12 49 49 H 0.96996 * 120.00140 * 0.02562 * 19 17 16 50 50 H 0.96998 * 120.00128 * 180.02562 * 23 22 20 51 51 H 1.08998 * 110.36815 * 85.32376 * 28 9 7 52 52 H 1.08998 * 110.36607 * 323.00170 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 3.2659 -1.3246 0.9886 6 6 3.6759 -2.0082 2.2945 7 6 5.0041 -2.6952 2.1065 8 8 5.5673 -2.6427 1.0338 9 7 5.5657 -3.3679 3.1305 10 6 4.9942 -3.5116 4.4773 11 6 5.9689 -4.3824 5.2988 12 6 6.7562 -5.1493 4.2035 13 1 6.2006 -6.0228 3.8623 14 7 8.0903 -5.5323 4.6848 15 6 7.9942 -6.4240 5.8482 16 6 8.8796 -6.1508 3.6113 17 6 10.3088 -6.3049 4.0637 18 8 10.6374 -5.9364 5.1716 19 7 11.2219 -6.8524 3.2372 20 6 12.5209 -6.9979 3.6509 21 1 12.8134 -6.6698 4.6373 22 6 13.4611 -7.5675 2.8009 23 7 14.7060 -7.7074 3.1976 24 14 12.9551 -8.1344 1.0945 25 1 13.1264 -7.0176 0.1308 26 1 13.8053 -9.2796 0.6810 27 1 11.5316 -8.5566 1.1148 28 6 6.8549 -4.0816 3.0853 29 1 -0.3632 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.6768 1.9563 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 3.1300 1.4425 0.0005 36 1 4.0200 -0.5875 0.7125 37 1 3.1808 -2.0707 0.1987 38 1 2.9221 -2.7453 2.5710 39 1 3.7612 -1.2618 3.0843 40 1 4.8903 -2.5314 4.9425 41 1 4.0219 -4.0007 4.4172 42 1 5.4225 -5.0760 5.9379 43 1 6.6391 -3.7581 5.8897 44 1 8.9818 -6.5499 6.2920 45 1 7.3179 -5.9894 6.5843 46 1 7.6117 -7.3943 5.5317 47 1 8.8455 -5.5179 2.7245 48 1 8.4657 -7.1308 3.3744 49 1 10.9592 -7.1468 2.3511 50 1 15.3624 -8.1047 2.6041 51 1 7.6763 -3.3945 3.2880 52 1 6.9899 -4.5598 2.1151 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188982548.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:09:19 Heat of formation + Delta-G solvation = -131.783211 kcal Electronic energy + Delta-G solvation = -29727.409584 eV Core-core repulsion = 25533.306865 eV Total energy + Delta-G solvation = -4194.102718 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.35829 -40.47756 -39.46757 -38.88578 -36.78244 -35.83161 -34.32868 -33.76048 -32.43848 -31.50740 -29.89523 -29.43732 -28.11635 -26.68594 -25.81572 -24.32255 -23.50382 -22.27610 -21.41632 -21.14489 -20.31575 -19.98280 -18.58703 -17.97647 -17.57977 -17.32624 -17.12289 -16.81009 -16.28945 -16.22098 -15.83007 -15.74357 -15.53056 -15.38301 -14.88753 -14.78696 -14.52655 -14.28677 -14.20015 -14.01849 -13.80143 -13.71127 -13.42068 -13.31662 -13.14872 -13.08198 -12.81822 -12.75009 -12.58502 -12.46735 -12.42191 -12.31629 -12.13020 -11.98594 -11.88035 -11.81640 -11.61362 -11.48638 -11.04944 -10.56949 -10.38356 -10.24085 -9.73385 -9.26304 -8.41958 -6.02123 1.28387 1.33913 1.41910 1.51782 1.71352 1.94788 2.21318 2.55406 2.76390 3.13446 3.21105 3.37076 3.65863 3.71279 3.92365 3.96976 4.03914 4.09950 4.13493 4.16843 4.26218 4.29490 4.32773 4.35188 4.41375 4.44573 4.58602 4.60329 4.68382 4.71609 4.75928 4.78170 4.81814 4.90594 4.91629 4.93013 4.97741 5.01461 5.17041 5.20235 5.28247 5.30058 5.33583 5.52331 5.86527 5.97606 6.17468 6.22834 6.44035 6.59118 6.88152 7.03106 7.39368 7.96285 8.75553 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.016202 B = 0.001892 C = 0.001741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.762236 B =14792.473432 C =16077.057108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.072 3.928 3 C -0.174 4.174 4 O -0.394 6.394 5 C 0.080 3.920 6 C -0.122 4.122 7 C 0.528 3.472 8 O -0.589 6.589 9 N -0.615 5.615 10 C 0.100 3.900 11 C -0.118 4.118 12 C 0.073 3.927 13 H 0.073 0.927 14 N -0.528 5.528 15 C 0.027 3.973 16 C 0.051 3.949 17 C 0.454 3.546 18 O -0.601 6.601 19 N -0.594 5.594 20 C -0.326 4.326 21 H 0.058 0.942 22 C -0.013 4.013 23 N -0.933 5.933 24 Si 0.960 3.040 25 H -0.260 1.260 26 H -0.273 1.273 27 H -0.233 1.233 28 C 0.111 3.889 29 H 0.063 0.937 30 H 0.085 0.915 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.080 0.920 34 H 0.063 0.937 35 H 0.047 0.953 36 H 0.044 0.956 37 H 0.049 0.951 38 H 0.125 0.875 39 H 0.120 0.880 40 H 0.091 0.909 41 H 0.100 0.900 42 H 0.109 0.891 43 H 0.080 0.920 44 H 0.053 0.947 45 H 0.092 0.908 46 H 0.032 0.968 47 H 0.108 0.892 48 H 0.079 0.921 49 H 0.388 0.612 50 H 0.279 0.721 51 H 0.061 0.939 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.919 10.861 -4.743 35.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.015 3.985 3 C -0.232 4.232 4 O -0.314 6.314 5 C 0.003 3.997 6 C -0.161 4.161 7 C 0.318 3.682 8 O -0.470 6.470 9 N -0.349 5.349 10 C -0.022 4.022 11 C -0.156 4.156 12 C -0.036 4.036 13 H 0.090 0.910 14 N -0.253 5.253 15 C -0.120 4.120 16 C -0.080 4.080 17 C 0.241 3.759 18 O -0.485 6.485 19 N -0.236 5.236 20 C -0.455 4.455 21 H 0.076 0.924 22 C -0.212 4.212 23 N -0.574 5.574 24 Si 0.781 3.219 25 H -0.185 1.185 26 H -0.198 1.198 27 H -0.156 1.156 28 C -0.013 4.013 29 H 0.082 0.918 30 H 0.104 0.896 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.099 0.901 34 H 0.082 0.918 35 H 0.066 0.934 36 H 0.062 0.938 37 H 0.067 0.933 38 H 0.143 0.857 39 H 0.138 0.862 40 H 0.109 0.891 41 H 0.118 0.882 42 H 0.128 0.872 43 H 0.098 0.902 44 H 0.072 0.928 45 H 0.110 0.890 46 H 0.050 0.950 47 H 0.126 0.874 48 H 0.097 0.903 49 H 0.223 0.777 50 H 0.088 0.912 51 H 0.079 0.921 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -33.107 11.545 -4.308 35.326 hybrid contribution 0.871 -1.126 -1.317 1.939 sum -32.236 10.419 -5.625 34.342 Atomic orbital electron populations 1.21864 0.92228 1.02893 1.03321 1.22301 0.95991 0.92670 0.87584 1.22295 1.01109 0.96452 1.03321 1.87818 1.36324 1.70311 1.36971 1.22056 0.85403 0.95544 0.96723 1.21391 0.93197 1.01765 0.99767 1.20637 0.87346 0.77998 0.82172 1.90717 1.65948 1.62872 1.27478 1.48480 1.21647 1.51840 1.12923 1.22362 0.97921 1.01729 0.80143 1.22752 0.97291 0.98759 0.96763 1.22818 0.88667 0.96682 0.95422 0.90951 1.61517 1.13591 1.43780 1.06398 1.22445 1.02736 0.93932 0.92908 1.21864 0.90005 1.00569 0.95555 1.20783 0.88239 0.81208 0.85656 1.90511 1.81703 1.53429 1.22859 1.42063 1.08304 1.57061 1.16168 1.19003 0.84702 1.39856 1.01937 0.92394 1.26046 0.94584 0.96869 1.03675 1.69792 1.03532 1.44892 1.39184 0.85425 0.80232 0.79050 0.77219 1.18466 1.19847 1.15643 1.22147 0.86030 0.94163 0.98955 0.91837 0.89612 0.92103 0.92091 0.90104 0.91807 0.93368 0.93769 0.93302 0.85715 0.86220 0.89051 0.88162 0.87248 0.90175 0.92813 0.88988 0.94958 0.87423 0.90321 0.77723 0.91176 0.92066 0.91426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.56 71.98 0.69 -0.68 16 2 C 0.07 0.93 3.34 30.59 0.10 1.03 16 3 C -0.17 -2.02 9.53 71.98 0.69 -1.33 16 4 O -0.39 -6.48 9.99 -148.98 -1.49 -7.97 16 5 C 0.08 1.37 5.04 71.98 0.36 1.73 16 6 C -0.12 -1.67 5.26 29.85 0.16 -1.52 16 7 C 0.53 11.27 7.85 87.66 0.69 11.96 16 8 O -0.59 -18.05 16.24 -3.01 -0.05 -18.10 16 9 N -0.62 -11.49 3.33 -811.68 -2.70 -14.19 16 10 C 0.10 1.06 6.49 86.75 0.56 1.63 16 11 C -0.12 -1.58 5.30 31.80 0.17 -1.41 16 12 C 0.07 1.44 2.71 46.31 0.13 1.57 16 13 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 14 N -0.53 -14.95 4.40 -893.43 -3.93 -18.88 16 15 C 0.03 0.75 9.08 127.69 1.16 1.91 16 16 C 0.05 1.61 5.33 85.56 0.46 2.06 16 17 C 0.45 20.59 7.54 87.65 0.66 21.25 16 18 O -0.60 -32.84 13.88 -3.07 -0.04 -32.88 16 19 N -0.59 -28.48 5.09 -306.98 -1.56 -30.04 16 20 C -0.33 -19.25 10.16 84.04 0.85 -18.39 16 21 H 0.06 4.05 7.39 -2.91 -0.02 4.03 16 22 C -0.01 -0.73 5.50 84.93 0.47 -0.26 16 23 N -0.93 -56.72 13.96 21.66 0.30 -56.42 16 24 Si 0.96 39.70 27.74 68.60 1.90 41.60 16 25 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 26 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 27 H -0.23 -8.17 6.52 99.48 0.65 -7.52 16 28 C 0.11 2.54 5.38 86.86 0.47 3.00 16 29 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.09 0.51 8.14 -2.38 -0.02 0.49 16 31 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.06 0.78 7.79 -2.39 -0.02 0.76 16 33 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 35 H 0.05 0.65 7.87 -2.39 -0.02 0.63 16 36 H 0.04 0.86 7.83 -2.38 -0.02 0.85 16 37 H 0.05 0.91 8.04 -2.39 -0.02 0.89 16 38 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.10 0.56 8.14 -2.38 -0.02 0.54 16 42 H 0.11 0.94 7.88 -2.39 -0.02 0.93 16 43 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 44 H 0.05 1.99 6.01 -2.39 -0.01 1.98 16 45 H 0.09 1.92 6.72 -2.39 -0.02 1.90 16 46 H 0.03 0.78 8.06 -2.39 -0.02 0.76 16 47 H 0.11 3.03 6.72 -2.39 -0.02 3.01 16 48 H 0.08 2.07 8.06 -2.39 -0.02 2.05 16 49 H 0.39 15.63 5.76 -92.71 -0.53 15.10 16 50 H 0.28 15.50 8.31 -92.71 -0.77 14.73 16 51 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 52 H 0.07 1.68 7.68 -2.39 -0.02 1.66 16 Total: -1.00 -82.20 415.23 0.35 -81.85 By element: Atomic # 1 Polarization: 32.18 SS G_CDS: 0.31 Total: 32.48 kcal Atomic # 6 Polarization: 14.94 SS G_CDS: 7.61 Total: 22.55 kcal Atomic # 7 Polarization: -111.64 SS G_CDS: -7.89 Total: -119.53 kcal Atomic # 8 Polarization: -57.37 SS G_CDS: -1.58 Total: -58.95 kcal Atomic # 14 Polarization: 39.70 SS G_CDS: 1.90 Total: 41.60 kcal Total: -82.20 0.35 -81.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188982548.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.931 kcal (2) G-P(sol) polarization free energy of solvation -82.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds