Wall clock time and date at job start Wed Apr 1 2020 01:45:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46986 * 2 1 4 4 C 1.53001 * 109.47391 * 239.99839 * 2 1 3 5 5 C 1.52995 * 109.47198 * 294.89992 * 4 2 1 6 6 H 1.09001 * 109.47167 * 53.16210 * 5 4 2 7 7 C 1.53002 * 109.47346 * 173.15990 * 5 4 2 8 8 C 1.50701 * 109.47324 * 293.16440 * 5 4 2 9 9 O 1.21284 * 119.99645 * 359.97438 * 8 5 4 10 10 N 1.34768 * 120.00165 * 179.97438 * 8 5 4 11 11 C 1.46503 * 120.00316 * 179.97438 * 10 8 5 12 12 H 1.09006 * 110.62591 * 36.64797 * 11 10 8 13 13 C 1.54323 * 110.70456 * 273.54814 * 11 10 8 14 14 N 1.47445 * 107.23087 * 219.33024 * 13 11 10 15 15 C 1.46900 * 110.99683 * 236.74104 * 14 13 11 16 16 C 1.50704 * 109.46750 * 170.00125 * 15 14 13 17 17 O 1.21283 * 120.00181 * 0.02562 * 16 15 14 18 18 N 1.34775 * 119.99714 * 179.97438 * 16 15 14 19 19 C 1.37098 * 119.99988 * 180.02562 * 18 16 15 20 20 H 1.08004 * 119.99925 * 359.97438 * 19 18 16 21 21 C 1.38949 * 119.99960 * 180.02562 * 19 18 16 22 22 N 1.31406 * 120.00125 * 359.97438 * 21 19 18 23 23 Si 1.86807 * 119.99628 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47016 * 90.00159 * 23 21 19 25 25 H 1.48501 * 109.46829 * 209.99850 * 23 21 19 26 26 H 1.48494 * 109.47380 * 329.99735 * 23 21 19 27 27 C 1.47839 * 108.56570 * 359.00906 * 14 13 11 28 28 C 1.54908 * 104.79810 * 24.09623 * 27 14 13 29 29 H 1.09005 * 110.98654 * 81.02045 * 28 27 14 30 30 O 1.42905 * 110.98931 * 204.83444 * 28 27 14 31 31 H 1.08998 * 109.46524 * 185.19531 * 1 2 3 32 32 H 1.08997 * 109.47380 * 305.19791 * 1 2 3 33 33 H 1.09000 * 109.47060 * 65.19708 * 1 2 3 34 34 H 1.08997 * 109.47432 * 119.99496 * 2 1 3 35 35 H 1.08997 * 109.46857 * 299.99493 * 3 2 1 36 36 H 1.08993 * 109.47382 * 59.99928 * 3 2 1 37 37 H 1.09000 * 109.46781 * 180.02562 * 3 2 1 38 38 H 1.09002 * 109.46889 * 54.90346 * 4 2 1 39 39 H 1.09000 * 109.47357 * 174.89562 * 4 2 1 40 40 H 1.09003 * 109.46361 * 55.07726 * 7 5 4 41 41 H 1.09001 * 109.47172 * 175.07745 * 7 5 4 42 42 H 1.08998 * 109.46973 * 295.08129 * 7 5 4 43 43 H 0.97006 * 120.00309 * 0.02562 * 10 8 5 44 44 H 1.09000 * 109.88907 * 338.73506 * 13 11 10 45 45 H 1.08995 * 109.88792 * 99.76153 * 13 11 10 46 46 H 1.08996 * 109.47151 * 289.99967 * 15 14 13 47 47 H 1.09004 * 109.46915 * 50.00372 * 15 14 13 48 48 H 0.97003 * 120.00333 * 0.02562 * 18 16 15 49 49 H 0.97004 * 119.99584 * 180.02562 * 22 21 19 50 50 H 1.09006 * 110.37178 * 142.92684 * 27 14 13 51 51 H 1.08996 * 110.37782 * 265.15210 * 27 14 13 52 52 H 0.96704 * 113.99856 * 292.26686 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6375 -2.1960 -1.1867 6 1 0.5634 -2.2726 -1.0180 7 6 1.9961 -2.8790 -2.5081 8 6 2.3728 -2.8700 -0.0571 9 8 3.1433 -2.2336 0.6301 10 7 2.1741 -4.1800 0.1896 11 6 2.8893 -4.8354 1.2874 12 1 2.9922 -4.1594 2.1364 13 6 4.2716 -5.3348 0.8169 14 7 4.5010 -6.6463 1.4503 15 6 5.7445 -6.6429 2.2323 16 6 5.8228 -7.9021 3.0567 17 8 4.9309 -8.7218 2.9981 18 7 6.8846 -8.1177 3.8583 19 6 6.9562 -9.2634 4.6079 20 1 6.1615 -9.9929 4.5563 21 6 8.0506 -9.4854 5.4347 22 7 9.0173 -8.5976 5.4978 23 14 8.1477 -11.0462 6.4565 24 1 8.8358 -12.1063 5.6769 25 1 8.9086 -10.7754 7.7027 26 1 6.7759 -11.4976 6.8024 27 6 3.3381 -6.9660 2.3054 28 6 2.1694 -6.1438 1.7073 29 1 1.7400 -6.6483 0.8417 30 8 1.1689 -5.8837 2.6941 31 1 -0.3632 -1.0235 0.0931 32 1 -0.3634 0.5923 0.8397 33 1 -0.3633 0.4311 -0.9329 34 1 1.8934 -0.5137 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9564 0.8899 37 1 3.1300 1.4425 -0.0005 38 1 1.6041 -0.2629 -2.1369 39 1 3.1262 -0.6428 -1.2961 40 1 3.0545 -2.7270 -2.7200 41 1 1.7902 -3.9467 -2.4327 42 1 1.3991 -2.4497 -3.3127 43 1 1.5581 -4.6891 -0.3602 44 1 4.2781 -5.4406 -0.2679 45 1 5.0447 -4.6310 1.1253 46 1 6.5985 -6.5973 1.5566 47 1 5.7564 -5.7753 2.8921 48 1 7.5982 -7.4623 3.9049 49 1 9.7815 -8.7528 6.0747 50 1 3.1149 -8.0319 2.2594 51 1 3.5294 -6.6632 3.3348 52 1 0.6918 -6.6719 2.9877 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001197244025.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:45:04 Heat of formation + Delta-G solvation = -157.729873 kcal Electronic energy + Delta-G solvation = -30670.323084 eV Core-core repulsion = 26475.095234 eV Total energy + Delta-G solvation = -4195.227850 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.55839 -40.66509 -39.44138 -37.40018 -36.95392 -36.00357 -35.41216 -33.87571 -33.33999 -31.31242 -29.24187 -28.08835 -28.03046 -27.41055 -26.11008 -24.37716 -22.72412 -21.98948 -21.28438 -21.09625 -20.65560 -19.89204 -18.67139 -18.11754 -17.90224 -17.42723 -16.74580 -16.32091 -16.28633 -16.16841 -15.97974 -15.68778 -15.48183 -15.02676 -14.95535 -14.41663 -14.37615 -14.27977 -14.13938 -13.80402 -13.61840 -13.51860 -13.33723 -13.23904 -13.05068 -13.03674 -12.97806 -12.80066 -12.62194 -12.54717 -12.44030 -12.32392 -12.13646 -11.78572 -11.57008 -11.52057 -11.36274 -11.30834 -11.16292 -10.62466 -10.30278 -10.16831 -10.03824 -9.33628 -8.48871 -5.98027 1.36531 1.40543 1.53465 1.65922 1.98822 2.07507 2.26496 2.61215 3.07718 3.17580 3.24615 3.53427 3.63964 3.77455 3.90107 3.92369 3.95869 4.15157 4.18573 4.22117 4.28570 4.35558 4.38463 4.43803 4.45646 4.49368 4.61358 4.79109 4.81562 4.82557 4.86357 4.89749 4.95203 5.02345 5.04698 5.09119 5.10948 5.17793 5.34134 5.37762 5.38767 5.41201 5.53854 5.62258 5.72054 5.86270 6.00926 6.54777 6.55824 6.73675 7.08898 7.28069 7.50955 8.05000 8.68585 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.020927 B = 0.002044 C = 0.001989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.666730 B =13697.297893 C =14076.703481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.108 4.108 3 C -0.142 4.142 4 C -0.091 4.091 5 C -0.106 4.106 6 H 0.118 0.882 7 C -0.142 4.142 8 C 0.513 3.487 9 O -0.576 6.576 10 N -0.704 5.704 11 C 0.140 3.860 12 H 0.071 0.929 13 C 0.039 3.961 14 N -0.509 5.509 15 C 0.048 3.952 16 C 0.440 3.560 17 O -0.611 6.611 18 N -0.572 5.572 19 C -0.332 4.332 20 H 0.083 0.917 21 C -0.016 4.016 22 N -0.921 5.921 23 Si 0.996 3.004 24 H -0.270 1.270 25 H -0.272 1.272 26 H -0.271 1.271 27 C 0.036 3.964 28 C 0.099 3.901 29 H 0.106 0.894 30 O -0.570 6.570 31 H 0.054 0.946 32 H 0.048 0.952 33 H 0.070 0.930 34 H 0.052 0.948 35 H 0.067 0.933 36 H 0.050 0.950 37 H 0.042 0.958 38 H 0.091 0.909 39 H 0.050 0.950 40 H 0.051 0.949 41 H 0.072 0.928 42 H 0.088 0.912 43 H 0.416 0.584 44 H 0.101 0.899 45 H 0.059 0.941 46 H 0.112 0.888 47 H 0.061 0.939 48 H 0.395 0.605 49 H 0.278 0.722 50 H 0.088 0.912 51 H 0.025 0.975 52 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.648 15.060 -16.767 28.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.127 4.127 3 C -0.199 4.199 4 C -0.129 4.129 5 C -0.127 4.127 6 H 0.136 0.864 7 C -0.200 4.200 8 C 0.301 3.699 9 O -0.455 6.455 10 N -0.357 5.357 11 C 0.033 3.967 12 H 0.089 0.911 13 C -0.090 4.090 14 N -0.234 5.234 15 C -0.084 4.084 16 C 0.227 3.773 17 O -0.497 6.497 18 N -0.209 5.209 19 C -0.461 4.461 20 H 0.101 0.899 21 C -0.215 4.215 22 N -0.562 5.562 23 Si 0.819 3.181 24 H -0.195 1.195 25 H -0.197 1.197 26 H -0.196 1.196 27 C -0.093 4.093 28 C 0.039 3.961 29 H 0.124 0.876 30 O -0.378 6.378 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.089 0.911 34 H 0.070 0.930 35 H 0.086 0.914 36 H 0.069 0.931 37 H 0.061 0.939 38 H 0.110 0.890 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.091 0.909 42 H 0.107 0.893 43 H 0.254 0.746 44 H 0.119 0.881 45 H 0.077 0.923 46 H 0.130 0.870 47 H 0.079 0.921 48 H 0.229 0.771 49 H 0.087 0.913 50 H 0.106 0.894 51 H 0.043 0.957 52 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -17.256 15.206 -16.658 28.398 hybrid contribution 0.603 -0.631 1.627 1.847 sum -16.653 14.575 -15.030 26.752 Atomic orbital electron populations 1.21877 0.94356 1.01636 1.02296 1.21223 0.96321 0.96420 0.98725 1.21770 1.00375 0.95821 1.01962 1.21475 1.00730 0.92403 0.98277 1.21474 1.01662 0.96058 0.93475 0.86399 1.21816 1.02360 1.01058 0.94730 1.21412 0.81640 0.81442 0.85406 1.90686 1.38636 1.64871 1.51277 1.45793 1.46248 1.10222 1.33442 1.21801 0.91493 0.93250 0.90146 0.91102 1.23282 0.95872 0.88551 1.01293 1.63426 1.01342 1.28065 1.30591 1.22083 0.95314 0.94644 0.96313 1.20558 0.83425 0.89819 0.83477 1.90451 1.40178 1.49182 1.69899 1.41937 1.19976 1.20432 1.38532 1.19684 1.06463 0.98709 1.21246 0.89911 1.26105 0.94572 1.02134 0.98713 1.69684 1.09924 1.36548 1.40057 0.84889 0.78414 0.77297 0.77507 1.19533 1.19716 1.19561 1.23537 0.89962 1.01490 0.94292 1.23163 0.87854 0.93406 0.91690 0.87649 1.86447 1.52229 1.38961 1.60180 0.92732 0.93257 0.91091 0.93000 0.91415 0.93118 0.93884 0.89026 0.93100 0.92965 0.90910 0.89283 0.74587 0.88067 0.92273 0.87023 0.92140 0.77141 0.91290 0.89404 0.95656 0.74900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 8.83 71.98 0.64 -1.27 16 2 C -0.11 -1.90 2.72 -10.79 -0.03 -1.93 16 3 C -0.14 -2.29 9.19 71.98 0.66 -1.63 16 4 C -0.09 -1.34 3.79 30.59 0.12 -1.23 16 5 C -0.11 -1.37 2.61 -11.54 -0.03 -1.40 16 6 H 0.12 1.11 6.39 -2.39 -0.02 1.10 16 7 C -0.14 -1.22 9.13 71.98 0.66 -0.56 16 8 C 0.51 10.82 6.83 87.66 0.60 11.42 16 9 O -0.58 -17.48 13.83 -3.04 -0.04 -17.53 16 10 N -0.70 -13.00 4.99 -436.96 -2.18 -15.18 16 11 C 0.14 3.51 2.97 46.17 0.14 3.65 16 12 H 0.07 2.26 7.69 -2.38 -0.02 2.24 16 13 C 0.04 1.03 6.62 86.65 0.57 1.61 16 14 N -0.51 -16.72 5.21 -890.09 -4.64 -21.36 16 15 C 0.05 1.76 5.32 85.56 0.45 2.21 16 16 C 0.44 21.09 7.31 87.66 0.64 21.73 16 17 O -0.61 -32.54 13.13 -3.04 -0.04 -32.58 16 18 N -0.57 -29.79 5.29 -306.99 -1.62 -31.41 16 19 C -0.33 -18.84 9.68 84.04 0.81 -18.03 16 20 H 0.08 4.95 7.16 -2.91 -0.02 4.93 16 21 C -0.02 -0.84 5.50 84.93 0.47 -0.37 16 22 N -0.92 -50.42 13.05 21.66 0.28 -50.14 16 23 Si 1.00 43.04 29.55 68.60 2.03 45.07 16 24 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 25 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 26 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 27 C 0.04 1.19 4.68 86.77 0.41 1.59 16 28 C 0.10 2.35 4.03 31.98 0.13 2.48 16 29 H 0.11 1.91 8.00 -2.38 -0.02 1.89 16 30 O -0.57 -13.38 13.47 -148.98 -2.01 -15.38 16 31 H 0.05 0.69 6.68 -2.39 -0.02 0.67 16 32 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.05 1.30 6.05 -2.39 -0.01 1.28 16 35 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.05 0.97 7.89 -2.39 -0.02 0.95 16 40 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 41 H 0.07 0.47 7.43 -2.39 -0.02 0.45 16 42 H 0.09 0.43 8.14 -2.39 -0.02 0.41 16 43 H 0.42 4.91 7.88 -92.70 -0.73 4.17 16 44 H 0.10 2.34 8.03 -2.39 -0.02 2.32 16 45 H 0.06 1.67 7.50 -2.39 -0.02 1.65 16 46 H 0.11 3.68 8.14 -2.39 -0.02 3.66 16 47 H 0.06 2.12 7.96 -2.38 -0.02 2.10 16 48 H 0.39 19.82 7.90 -92.71 -0.73 19.09 16 49 H 0.28 14.22 8.31 -92.71 -0.77 13.45 16 50 H 0.09 3.30 6.71 -2.38 -0.02 3.28 16 51 H 0.02 0.98 7.53 -2.39 -0.02 0.96 16 52 H 0.40 6.22 9.12 -74.05 -0.68 5.54 16 Total: -1.00 -73.81 410.54 -3.18 -76.99 By element: Atomic # 1 Polarization: 44.44 SS G_CDS: -1.19 Total: 43.24 kcal Atomic # 6 Polarization: 12.04 SS G_CDS: 6.23 Total: 18.27 kcal Atomic # 7 Polarization: -109.93 SS G_CDS: -8.16 Total: -118.08 kcal Atomic # 8 Polarization: -63.40 SS G_CDS: -2.09 Total: -65.49 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Total: -73.81 -3.18 -76.99 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197244025.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.745 kcal (2) G-P(sol) polarization free energy of solvation -73.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds