Wall clock time and date at job start Wed Apr 1 2020 01:45:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47072 * 2 1 4 4 C 1.53007 * 109.47121 * 119.99926 * 2 1 3 5 5 C 1.53005 * 109.46732 * 66.71988 * 4 2 1 6 6 H 1.08995 * 109.47304 * 305.96910 * 5 4 2 7 7 C 1.53000 * 109.46559 * 185.96917 * 5 4 2 8 8 C 1.50698 * 109.46752 * 65.97406 * 5 4 2 9 9 O 1.21279 * 120.00130 * 359.97438 * 8 5 4 10 10 N 1.34781 * 119.99654 * 179.97438 * 8 5 4 11 11 C 1.46498 * 120.00008 * 180.02562 * 10 8 5 12 12 H 1.09003 * 110.90875 * 31.12754 * 11 10 8 13 13 C 1.54910 * 110.98910 * 267.26440 * 11 10 8 14 14 N 1.47844 * 104.79570 * 204.83572 * 13 11 10 15 15 C 1.46909 * 110.99847 * 146.35775 * 14 13 11 16 16 C 1.50700 * 109.46663 * 56.21685 * 15 14 13 17 17 O 1.21291 * 120.00193 * 6.53325 * 16 15 14 18 18 N 1.34773 * 119.99960 * 186.53161 * 16 15 14 19 19 C 1.37098 * 120.00197 * 179.97438 * 18 16 15 20 20 H 1.08002 * 119.99630 * 0.02562 * 19 18 16 21 21 C 1.38950 * 120.00199 * 180.02562 * 19 18 16 22 22 N 1.31413 * 119.99930 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00269 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47036 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47490 * 119.99809 * 23 21 19 26 26 H 1.48501 * 109.46964 * 240.00267 * 23 21 19 27 27 C 1.47444 * 108.56544 * 24.09552 * 14 13 11 28 28 C 1.54317 * 107.23642 * 359.01106 * 27 14 13 29 29 H 1.08993 * 110.70723 * 96.10052 * 28 27 14 30 30 O 1.42901 * 110.70504 * 219.16126 * 28 27 14 31 31 H 1.08993 * 109.47315 * 303.84171 * 1 2 3 32 32 H 1.09003 * 109.47082 * 63.84566 * 1 2 3 33 33 H 1.09003 * 109.47007 * 183.84183 * 1 2 3 34 34 H 1.08998 * 109.47158 * 240.00012 * 2 1 3 35 35 H 1.08997 * 109.47429 * 179.97438 * 3 2 1 36 36 H 1.09000 * 109.47352 * 299.99863 * 3 2 1 37 37 H 1.08998 * 109.47119 * 59.99988 * 3 2 1 38 38 H 1.08998 * 109.46719 * 306.72339 * 4 2 1 39 39 H 1.08991 * 109.46875 * 186.72289 * 4 2 1 40 40 H 1.08995 * 109.47273 * 64.85978 * 7 5 4 41 41 H 1.09004 * 109.46789 * 184.85971 * 7 5 4 42 42 H 1.09007 * 109.47451 * 304.85532 * 7 5 4 43 43 H 0.97001 * 120.00012 * 359.97438 * 10 8 5 44 44 H 1.08995 * 110.37122 * 86.00697 * 13 11 10 45 45 H 1.09000 * 110.37063 * 323.66534 * 13 11 10 46 46 H 1.08999 * 109.46461 * 176.21180 * 15 14 13 47 47 H 1.08990 * 109.47246 * 296.21549 * 15 14 13 48 48 H 0.97003 * 120.00140 * 0.02562 * 18 16 15 49 49 H 0.96997 * 120.00207 * 180.02562 * 22 21 19 50 50 H 1.09002 * 109.88992 * 239.59628 * 27 14 13 51 51 H 1.09007 * 110.02419 * 118.49297 * 27 14 13 52 52 H 0.96698 * 113.99742 * 296.19380 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6725 -2.2043 1.1677 6 1 0.6003 -2.3041 0.9991 7 6 2.0491 -2.8958 2.4795 8 6 2.4221 -2.8455 0.0285 9 8 3.1756 -2.1817 -0.6515 10 7 2.2550 -4.1568 -0.2347 11 6 2.9841 -4.7804 -1.3419 12 1 3.9493 -4.2970 -1.4933 13 6 2.1427 -4.7588 -2.6424 14 7 2.6628 -5.8845 -3.4473 15 6 1.5922 -6.5037 -4.2400 16 6 0.9368 -5.4568 -5.1035 17 8 1.3975 -4.3358 -5.1524 18 7 -0.1611 -5.7661 -5.8213 19 6 -0.7577 -4.8135 -6.6063 20 1 -0.3475 -3.8154 -6.6499 21 6 -1.8900 -5.1322 -7.3460 22 7 -2.3893 -6.3466 -7.2925 23 14 -2.7023 -3.8346 -8.4162 24 1 -1.9521 -2.5581 -8.3020 25 1 -2.6988 -4.2864 -9.8308 26 1 -4.1023 -3.6273 -7.9662 27 6 3.2816 -6.8658 -2.5373 28 6 3.1566 -6.3040 -1.1055 29 1 2.2817 -6.7177 -0.6042 30 8 4.3415 -6.5710 -0.3527 31 1 -0.3633 0.5723 0.8535 32 1 -0.3633 0.4530 -0.9225 33 1 -0.3633 -1.0254 0.0689 34 1 1.8934 -0.5138 -0.8900 35 1 3.1300 1.4425 0.0005 36 1 1.6767 1.9563 -0.8900 37 1 1.6767 1.9563 0.8900 38 1 1.5818 -0.2816 2.1351 39 1 3.1233 -0.6182 1.3115 40 1 1.4441 -2.4908 3.2905 41 1 1.8675 -3.9670 2.3906 42 1 3.1042 -2.7226 2.6917 43 1 1.6525 -4.6878 0.3094 44 1 2.2855 -3.8164 -3.1710 45 1 1.0877 -4.9109 -2.4143 46 1 2.0139 -7.2846 -4.8728 47 1 0.8502 -6.9394 -3.5710 48 1 -0.5298 -6.6624 -5.7818 49 1 -3.1796 -6.5692 -7.8091 50 1 4.3328 -6.9978 -2.7935 51 1 2.7604 -7.8206 -2.6078 52 1 4.5141 -7.5120 -0.2117 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001197244027.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:45:08 Heat of formation + Delta-G solvation = -130.913004 kcal Electronic energy + Delta-G solvation = -31158.745023 eV Core-core repulsion = 26964.680039 eV Total energy + Delta-G solvation = -4194.064983 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.45174 -39.31562 -37.92085 -36.50770 -35.82867 -34.46182 -33.86482 -33.08357 -31.28920 -30.04772 -28.12939 -27.21330 -26.74741 -26.45937 -24.39600 -23.49399 -21.29492 -21.09942 -20.36524 -19.82635 -19.23524 -17.93183 -17.61983 -17.17128 -16.48965 -16.13784 -15.44981 -15.06146 -15.01749 -14.83312 -14.59036 -14.29500 -14.06889 -13.85899 -13.68141 -13.58154 -13.37106 -13.04405 -12.91915 -12.87151 -12.57599 -12.33034 -12.25460 -12.05006 -11.91934 -11.84843 -11.67515 -11.55582 -11.52793 -11.29266 -11.03150 -10.70619 -10.69621 -10.52713 -10.51545 -10.43343 -10.34145 -10.23460 -9.57746 -9.52495 -9.08202 -8.43564 -8.01351 -7.92013 -6.43644 -3.84209 2.66361 3.01578 3.15306 3.26251 3.33939 3.80424 3.87764 4.05522 4.25722 4.39552 4.51502 4.64533 4.69883 4.73188 4.80206 4.99945 5.04529 5.11917 5.16311 5.20650 5.21474 5.29945 5.38535 5.41195 5.47939 5.54267 5.63583 5.68040 5.71039 5.73435 5.79379 5.84380 5.85261 5.93319 5.96727 5.99129 6.05879 6.22127 6.23815 6.33462 6.39817 6.52937 6.56153 7.12905 7.17830 7.37643 7.44760 7.54229 8.04546 8.24873 8.59576 9.16672 9.51859 10.03640 10.74184 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.008727 B = 0.003216 C = 0.002498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3207.653623 B = 8703.754430 C =11206.992326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.108 4.108 3 C -0.142 4.142 4 C -0.092 4.092 5 C -0.115 4.115 6 H 0.100 0.900 7 C -0.143 4.143 8 C 0.519 3.481 9 O -0.526 6.526 10 N -0.720 5.720 11 C 0.142 3.858 12 H 0.113 0.887 13 C 0.050 3.950 14 N -0.499 5.499 15 C 0.040 3.960 16 C 0.440 3.560 17 O -0.574 6.574 18 N -0.564 5.564 19 C -0.297 4.297 20 H 0.104 0.896 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.928 3.072 24 H -0.267 1.267 25 H -0.281 1.281 26 H -0.282 1.282 27 C 0.012 3.988 28 C 0.075 3.925 29 H 0.066 0.934 30 O -0.554 6.554 31 H 0.050 0.950 32 H 0.054 0.946 33 H 0.052 0.948 34 H 0.091 0.909 35 H 0.054 0.946 36 H 0.053 0.947 37 H 0.048 0.952 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.066 0.934 41 H 0.058 0.942 42 H 0.061 0.939 43 H 0.397 0.603 44 H 0.110 0.890 45 H 0.046 0.954 46 H 0.092 0.908 47 H 0.047 0.953 48 H 0.391 0.609 49 H 0.271 0.729 50 H 0.090 0.910 51 H 0.061 0.939 52 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.293 0.209 20.747 21.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.126 4.126 3 C -0.199 4.199 4 C -0.130 4.130 5 C -0.136 4.136 6 H 0.117 0.883 7 C -0.200 4.200 8 C 0.306 3.694 9 O -0.401 6.401 10 N -0.371 5.371 11 C 0.036 3.964 12 H 0.131 0.869 13 C -0.078 4.078 14 N -0.225 5.225 15 C -0.091 4.091 16 C 0.225 3.775 17 O -0.458 6.458 18 N -0.201 5.201 19 C -0.427 4.427 20 H 0.122 0.878 21 C -0.179 4.179 22 N -0.544 5.544 23 Si 0.755 3.245 24 H -0.192 1.192 25 H -0.207 1.207 26 H -0.208 1.208 27 C -0.117 4.117 28 C 0.014 3.986 29 H 0.083 0.917 30 O -0.359 6.359 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.109 0.891 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.085 0.915 41 H 0.077 0.923 42 H 0.080 0.920 43 H 0.231 0.769 44 H 0.128 0.872 45 H 0.065 0.935 46 H 0.111 0.889 47 H 0.065 0.935 48 H 0.225 0.775 49 H 0.081 0.919 50 H 0.108 0.892 51 H 0.080 0.920 52 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 7.402 2.227 19.762 21.220 hybrid contribution -1.848 -1.477 0.145 2.370 sum 5.554 0.750 19.907 20.681 Atomic orbital electron populations 1.21920 0.95761 1.01411 1.01570 1.21278 0.95187 0.96430 0.99688 1.21767 1.01005 0.95979 1.01168 1.21462 1.01786 0.91692 0.98032 1.21456 1.01280 0.97022 0.93882 0.88251 1.21773 1.02431 1.00130 0.95691 1.20643 0.82110 0.81559 0.85111 1.90705 1.37220 1.61918 1.50250 1.45842 1.47223 1.10308 1.33773 1.22146 0.97521 0.90599 0.86147 0.86882 1.23391 0.96064 0.97512 0.90854 1.63301 1.29750 1.07272 1.22130 1.22170 0.92829 0.97222 0.96918 1.19703 0.83370 0.89309 0.85093 1.90536 1.64948 1.22397 1.67921 1.41861 1.24292 1.13739 1.40175 1.19758 1.07973 0.94341 1.20607 0.87832 1.25253 0.97093 0.97189 0.98394 1.69617 1.23663 1.18838 1.42280 0.85811 0.78795 0.80596 0.79248 1.19163 1.20711 1.20778 1.23585 1.02115 0.95368 0.90625 1.23300 0.87725 0.95902 0.91640 0.91654 1.86577 1.43970 1.30000 1.75307 0.93089 0.92655 0.92887 0.89103 0.92732 0.92837 0.93312 0.91585 0.91151 0.91494 0.92298 0.91992 0.76910 0.87227 0.93545 0.88944 0.93539 0.77547 0.91940 0.89219 0.92042 0.77479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.06 37.16 0.34 -1.24 16 2 C -0.11 -1.25 2.70 -90.62 -0.25 -1.50 16 3 C -0.14 -1.50 9.19 37.16 0.34 -1.16 16 4 C -0.09 -0.92 3.78 -26.72 -0.10 -1.03 16 5 C -0.12 -1.10 2.63 -91.77 -0.24 -1.34 16 6 H 0.10 0.86 6.31 -51.93 -0.33 0.53 16 7 C -0.14 -1.03 9.14 37.16 0.34 -0.69 16 8 C 0.52 6.83 6.82 -10.98 -0.07 6.76 16 9 O -0.53 -9.04 13.70 5.56 0.08 -8.96 16 10 N -0.72 -8.47 5.06 -51.74 -0.26 -8.74 16 11 C 0.14 1.98 3.15 -65.79 -0.21 1.77 16 12 H 0.11 1.89 7.54 -51.93 -0.39 1.50 16 13 C 0.05 0.86 4.99 -2.30 -0.01 0.85 16 14 N -0.50 -8.33 5.06 -232.68 -1.18 -9.50 16 15 C 0.04 0.70 5.06 -4.97 -0.03 0.68 16 16 C 0.44 10.34 7.34 -10.99 -0.08 10.26 16 17 O -0.57 -15.58 13.94 5.55 0.08 -15.50 16 18 N -0.56 -14.17 5.29 -10.96 -0.06 -14.23 16 19 C -0.30 -8.27 9.68 -14.93 -0.14 -8.41 16 20 H 0.10 3.05 7.16 -52.49 -0.38 2.67 16 21 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 22 N -0.90 -24.39 13.05 55.50 0.72 -23.67 16 23 Si 0.93 21.09 29.55 -169.99 -5.02 16.06 16 24 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 25 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 26 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 27 C 0.01 0.15 6.67 -2.84 -0.02 0.13 16 28 C 0.07 0.81 3.96 -24.91 -0.10 0.72 16 29 H 0.07 0.59 8.00 -51.93 -0.42 0.17 16 30 O -0.55 -5.63 13.39 -35.23 -0.47 -6.10 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.05 0.55 6.35 -51.93 -0.33 0.22 16 34 H 0.09 1.37 5.95 -51.93 -0.31 1.06 16 35 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.79 7.92 -51.93 -0.41 0.38 16 40 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.06 0.37 7.43 -51.93 -0.39 -0.02 16 42 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.40 3.50 7.93 -40.82 -0.32 3.18 16 44 H 0.11 2.35 6.96 -51.93 -0.36 1.99 16 45 H 0.05 0.80 7.74 -51.93 -0.40 0.40 16 46 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 47 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 48 H 0.39 9.37 7.90 -40.82 -0.32 9.05 16 49 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 50 H 0.09 1.06 8.06 -51.93 -0.42 0.65 16 51 H 0.06 0.62 7.59 -51.93 -0.39 0.22 16 52 H 0.38 2.04 9.12 45.56 0.42 2.46 16 LS Contribution 411.69 15.07 6.20 6.20 Total: -1.00 -34.20 411.69 -8.35 -42.55 By element: Atomic # 1 Polarization: 23.73 SS G_CDS: -8.11 Total: 15.61 kcal Atomic # 6 Polarization: 6.60 SS G_CDS: -0.33 Total: 6.28 kcal Atomic # 7 Polarization: -55.37 SS G_CDS: -0.77 Total: -56.14 kcal Atomic # 8 Polarization: -30.25 SS G_CDS: -0.32 Total: -30.57 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -34.20 -8.35 -42.55 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197244027.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.365 kcal (2) G-P(sol) polarization free energy of solvation -34.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds