Wall clock time and date at job start Wed Apr 1 2020 01:53:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42905 * 113.99924 * 2 1 4 4 H 1.09004 * 109.47054 * 29.99797 * 3 2 1 5 5 C 1.53002 * 109.47079 * 270.00099 * 3 2 1 6 6 C 1.52997 * 109.47264 * 150.00012 * 3 2 1 7 7 C 1.53010 * 109.46787 * 294.99875 * 6 3 2 8 8 C 1.50698 * 109.46618 * 179.97438 * 7 6 3 9 9 O 1.21279 * 120.00449 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99998 * 180.02562 * 8 7 6 11 11 C 1.46927 * 120.62693 * 359.71666 * 10 8 7 12 12 C 1.52756 * 109.01107 * 233.58549 * 11 10 8 13 13 C 1.53045 * 109.38264 * 305.59105 * 12 11 10 14 14 N 1.46904 * 109.44890 * 181.25389 * 13 12 11 15 15 C 1.46896 * 111.00042 * 84.93676 * 14 13 12 16 16 C 1.50702 * 109.47172 * 179.97438 * 15 14 13 17 17 O 1.21298 * 119.99902 * 0.02562 * 16 15 14 18 18 N 1.34771 * 120.00410 * 179.97438 * 16 15 14 19 19 C 1.37092 * 120.00561 * 180.02562 * 18 16 15 20 20 H 1.08007 * 119.99949 * 359.97438 * 19 18 16 21 21 C 1.38949 * 120.00560 * 180.02562 * 19 18 16 22 22 N 1.31415 * 120.00286 * 179.97438 * 21 19 18 23 23 Si 1.86807 * 119.99691 * 359.97438 * 21 19 18 24 24 H 1.48500 * 109.46758 * 90.00560 * 23 21 19 25 25 H 1.48499 * 109.47087 * 209.99986 * 23 21 19 26 26 H 1.48494 * 109.46932 * 330.00477 * 23 21 19 27 27 C 1.53036 * 109.53697 * 61.24044 * 13 12 11 28 28 C 1.46928 * 120.63448 * 180.02562 * 10 8 7 29 29 H 1.09006 * 109.46826 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46882 * 299.99937 * 1 2 3 31 31 H 1.08995 * 109.47077 * 60.00255 * 1 2 3 32 32 H 1.09004 * 109.46930 * 299.99773 * 5 3 2 33 33 H 1.09004 * 109.47059 * 59.99375 * 5 3 2 34 34 H 1.08992 * 109.47060 * 179.97438 * 5 3 2 35 35 H 1.08998 * 109.47192 * 54.99822 * 6 3 2 36 36 H 1.09000 * 109.46875 * 175.00224 * 6 3 2 37 37 H 1.08998 * 109.47211 * 299.99935 * 7 6 3 38 38 H 1.09000 * 109.47128 * 60.00503 * 7 6 3 39 39 H 1.08998 * 109.59003 * 353.42346 * 11 10 8 40 40 H 1.09006 * 109.58222 * 113.84928 * 11 10 8 41 41 H 1.09004 * 109.56953 * 185.55525 * 12 11 10 42 42 H 1.08999 * 109.38732 * 65.51523 * 12 11 10 43 43 H 1.08992 * 109.46007 * 301.21814 * 13 12 11 44 44 H 1.00902 * 110.99849 * 320.98399 * 14 13 12 45 45 H 1.08999 * 109.47504 * 300.00107 * 15 14 13 46 46 H 1.08997 * 109.47063 * 59.99973 * 15 14 13 47 47 H 0.97007 * 119.99540 * 0.02562 * 18 16 15 48 48 H 0.97000 * 119.99698 * 179.97438 * 22 21 19 49 49 H 1.09003 * 109.49444 * 178.68227 * 27 13 12 50 50 H 1.08998 * 109.52613 * 58.60372 * 27 13 12 51 51 H 1.09000 * 109.58655 * 246.15445 * 28 10 8 52 52 H 1.09005 * 109.58283 * 6.43868 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2176 1.7714 -1.4425 6 6 3.3589 1.2634 0.7212 7 6 3.1382 0.9185 2.1955 8 6 4.4667 0.8764 2.9058 9 8 5.4892 1.1006 2.2933 10 7 4.5185 0.5896 4.2216 11 6 3.2879 0.3219 4.9784 12 6 3.2424 1.2429 6.1962 13 6 4.5290 1.0756 7.0080 14 7 4.4737 1.9385 8.1956 15 6 3.7650 1.2735 9.2971 16 6 3.7291 2.1867 10.4954 17 8 4.2429 3.2839 10.4373 18 7 3.1252 1.7848 11.6312 19 6 3.0920 2.6157 12.7211 20 1 3.5503 3.5924 12.6696 21 6 2.4698 2.2011 13.8922 22 7 2.4385 2.9975 14.9371 23 14 1.6778 0.5116 13.9815 24 1 2.6774 -0.4791 14.4554 25 1 0.5332 0.5508 14.9267 26 1 1.1936 0.1202 12.6334 27 6 5.7318 1.4689 6.1475 28 6 5.8061 0.5453 4.9281 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 2.8830 1.0775 -1.9563 33 1 1.2568 1.8014 -1.9564 34 1 2.6605 2.7673 -1.4425 35 1 3.9931 0.5053 0.2618 36 1 3.8426 2.2371 0.6443 37 1 2.5040 1.6766 2.6550 38 1 2.6545 -0.0552 2.2725 39 1 2.4211 0.5120 4.3456 40 1 3.2810 -0.7169 5.3089 41 1 2.3844 0.9851 6.8171 42 1 3.1536 2.2774 5.8644 43 1 4.6294 0.0358 7.3191 44 1 4.0494 2.8275 7.9772 45 1 2.7464 1.0412 8.9862 46 1 4.2840 0.3514 9.5589 47 1 2.7139 0.9074 11.6775 48 1 2.0038 2.7081 15.7546 49 1 6.6457 1.3718 6.7337 50 1 5.6204 2.5011 5.8157 51 1 6.0090 -0.4747 5.2543 52 1 6.6004 0.8806 4.2611 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200202150.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:53:18 Heat of formation + Delta-G solvation = -123.492242 kcal Electronic energy + Delta-G solvation = -29705.738062 eV Core-core repulsion = 25511.994867 eV Total energy + Delta-G solvation = -4193.743195 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.56846 -38.97664 -38.59387 -37.78893 -35.19329 -34.19790 -33.93516 -31.99013 -31.67780 -31.06756 -30.35278 -27.25954 -27.03124 -25.37533 -24.27278 -23.50704 -22.87553 -21.56984 -20.85025 -19.52502 -19.15432 -18.31531 -17.56506 -17.30323 -16.23407 -16.06771 -15.90779 -15.52915 -15.46579 -15.26238 -14.95526 -14.75181 -14.41789 -14.26572 -13.98853 -13.84135 -13.57511 -13.42229 -13.14198 -12.97551 -12.82185 -12.66726 -12.60977 -12.43933 -12.19554 -11.97458 -11.90074 -11.76293 -11.60202 -11.53668 -11.44028 -11.20188 -11.04795 -10.99818 -10.71367 -10.61924 -10.12835 -9.99782 -9.94434 -9.59780 -8.94338 -8.61925 -8.21586 -8.14892 -6.33234 -3.84813 2.39466 2.70461 2.99371 3.04542 3.12739 3.32700 3.71184 4.00352 4.08025 4.10674 4.33893 4.41072 4.55747 4.66580 4.71916 4.75709 4.81865 4.83912 4.88299 4.89617 4.97808 5.02042 5.07967 5.16304 5.19164 5.21056 5.24422 5.27664 5.35757 5.44155 5.44997 5.48397 5.58969 5.62220 5.66479 5.71207 5.74175 5.82942 5.87129 5.90102 5.93318 6.12834 6.31450 6.75898 7.08021 7.12395 7.53296 7.56251 7.92922 8.12320 8.57432 8.92835 9.40067 9.80328 10.79870 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.017430 B = 0.001798 C = 0.001700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.036881 B =15565.618478 C =16467.849154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.385 6.385 3 C 0.083 3.917 4 H 0.061 0.939 5 C -0.175 4.175 6 C -0.101 4.101 7 C -0.139 4.139 8 C 0.516 3.484 9 O -0.544 6.544 10 N -0.613 5.613 11 C 0.112 3.888 12 C -0.170 4.170 13 C 0.089 3.911 14 N -0.662 5.662 15 C 0.048 3.952 16 C 0.449 3.551 17 O -0.564 6.564 18 N -0.590 5.590 19 C -0.306 4.306 20 H 0.119 0.881 21 C 0.041 3.959 22 N -0.881 5.881 23 Si 0.880 3.120 24 H -0.270 1.270 25 H -0.277 1.277 26 H -0.270 1.270 27 C -0.121 4.121 28 C 0.111 3.889 29 H 0.085 0.915 30 H 0.042 0.958 31 H 0.040 0.960 32 H 0.065 0.935 33 H 0.056 0.944 34 H 0.067 0.933 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.099 0.901 39 H 0.085 0.915 40 H 0.071 0.929 41 H 0.077 0.923 42 H 0.071 0.929 43 H 0.079 0.921 44 H 0.351 0.649 45 H 0.044 0.956 46 H 0.087 0.913 47 H 0.370 0.630 48 H 0.273 0.727 49 H 0.085 0.915 50 H 0.067 0.933 51 H 0.067 0.933 52 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.466 -9.619 -29.546 31.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.304 6.304 3 C 0.025 3.975 4 H 0.079 0.921 5 C -0.232 4.232 6 C -0.138 4.138 7 C -0.178 4.178 8 C 0.305 3.695 9 O -0.421 6.421 10 N -0.347 5.347 11 C -0.012 4.012 12 C -0.210 4.210 13 C -0.022 4.022 14 N -0.294 5.294 15 C -0.085 4.085 16 C 0.234 3.766 17 O -0.446 6.446 18 N -0.230 5.230 19 C -0.434 4.434 20 H 0.137 0.863 21 C -0.162 4.162 22 N -0.521 5.521 23 Si 0.707 3.293 24 H -0.196 1.196 25 H -0.202 1.202 26 H -0.196 1.196 27 C -0.159 4.159 28 C -0.012 4.012 29 H 0.103 0.897 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.098 0.902 36 H 0.102 0.898 37 H 0.108 0.892 38 H 0.117 0.883 39 H 0.103 0.897 40 H 0.089 0.911 41 H 0.095 0.905 42 H 0.090 0.910 43 H 0.097 0.903 44 H 0.171 0.829 45 H 0.062 0.938 46 H 0.105 0.895 47 H 0.203 0.797 48 H 0.084 0.916 49 H 0.104 0.896 50 H 0.086 0.914 51 H 0.085 0.915 52 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.893 -9.044 -29.427 30.921 hybrid contribution -2.064 -1.068 0.176 2.331 sum -4.957 -10.113 -29.251 31.344 Atomic orbital electron populations 1.22788 0.81215 1.02757 0.99933 1.87941 1.19487 1.27865 1.95092 1.22212 0.94847 0.84633 0.95776 0.92059 1.22266 1.02334 1.01932 0.96684 1.21471 0.95638 1.03826 0.92907 1.21679 0.95337 1.04469 0.96360 1.20716 0.91558 0.75760 0.81510 1.90689 1.36469 1.49407 1.65571 1.48183 1.08004 1.69940 1.08538 1.21610 0.86665 0.99462 0.93428 1.22672 1.00170 1.00846 0.97268 1.21590 0.93279 0.97723 0.89615 1.60168 1.57933 1.06072 1.05180 1.21739 0.96922 0.97852 0.91948 1.19728 0.83940 0.88704 0.84183 1.90573 1.48502 1.22365 1.83184 1.42205 1.51490 1.16928 1.12369 1.19434 1.34923 1.00705 0.88375 0.86293 1.25045 0.97721 0.98090 0.95317 1.69624 1.43427 1.36114 1.02915 0.86664 0.79999 0.84286 0.78368 1.19584 1.20192 1.19571 1.21878 0.99257 0.99790 0.95015 1.21652 0.85721 0.99904 0.93887 0.89667 0.93980 0.94169 0.91585 0.92508 0.91388 0.90182 0.89787 0.89176 0.88274 0.89706 0.91060 0.90458 0.91036 0.90317 0.82857 0.93816 0.89502 0.79718 0.91603 0.89600 0.91405 0.91481 0.88804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 10.82 101.05 1.09 1.24 16 2 O -0.38 -2.94 9.88 -35.23 -0.35 -3.29 16 3 C 0.08 0.54 2.72 -26.73 -0.07 0.47 16 4 H 0.06 0.33 7.79 -51.93 -0.40 -0.07 16 5 C -0.17 -1.01 9.53 37.16 0.35 -0.66 16 6 C -0.10 -0.78 4.21 -26.73 -0.11 -0.89 16 7 C -0.14 -1.02 3.94 -27.88 -0.11 -1.13 16 8 C 0.52 5.39 7.70 -10.99 -0.08 5.30 16 9 O -0.54 -7.62 15.39 5.56 0.09 -7.54 16 10 N -0.61 -5.65 2.98 -173.05 -0.52 -6.16 16 11 C 0.11 0.79 6.31 -3.93 -0.02 0.76 16 12 C -0.17 -1.44 5.31 -26.83 -0.14 -1.58 16 13 C 0.09 0.93 2.43 -67.67 -0.16 0.77 16 14 N -0.66 -9.61 5.87 -107.95 -0.63 -10.24 16 15 C 0.05 0.75 5.96 -4.98 -0.03 0.72 16 16 C 0.45 9.96 7.82 -10.99 -0.09 9.87 16 17 O -0.56 -15.00 15.78 5.54 0.09 -14.91 16 18 N -0.59 -13.81 5.09 -10.96 -0.06 -13.87 16 19 C -0.31 -8.58 10.16 -14.94 -0.15 -8.73 16 20 H 0.12 3.83 7.39 -52.48 -0.39 3.44 16 21 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 22 N -0.88 -25.56 13.96 55.50 0.77 -24.78 16 23 Si 0.88 19.06 27.74 -169.99 -4.71 14.35 16 24 H -0.27 -5.76 7.11 56.52 0.40 -5.35 16 25 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 26 H -0.27 -5.28 6.52 56.52 0.37 -4.91 16 27 C -0.12 -1.25 5.68 -26.63 -0.15 -1.40 16 28 C 0.11 1.06 6.43 -3.73 -0.02 1.04 16 29 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.04 0.18 8.08 -51.93 -0.42 -0.24 16 31 H 0.04 0.17 7.87 -51.93 -0.41 -0.24 16 32 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.29 7.87 -51.93 -0.41 -0.12 16 34 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.08 0.74 8.10 -51.93 -0.42 0.32 16 36 H 0.08 0.67 8.10 -51.93 -0.42 0.25 16 37 H 0.09 0.53 7.68 -51.93 -0.40 0.13 16 38 H 0.10 0.67 7.63 -51.93 -0.40 0.27 16 39 H 0.08 0.45 5.93 -51.93 -0.31 0.15 16 40 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.08 0.63 7.42 -51.93 -0.39 0.25 16 42 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.08 0.78 7.80 -51.93 -0.40 0.38 16 44 H 0.35 5.40 8.18 -39.29 -0.32 5.08 16 45 H 0.04 0.58 7.41 -51.93 -0.38 0.20 16 46 H 0.09 1.22 8.05 -51.93 -0.42 0.80 16 47 H 0.37 7.54 5.76 -40.82 -0.24 7.31 16 48 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 49 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 50 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 51 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 52 H 0.09 1.02 7.00 -51.93 -0.36 0.66 16 LS Contribution 413.49 15.07 6.23 6.23 Total: -1.00 -34.72 413.49 -7.93 -42.65 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: -9.04 Total: 10.76 kcal Atomic # 6 Polarization: 6.61 SS G_CDS: 0.20 Total: 6.81 kcal Atomic # 7 Polarization: -54.62 SS G_CDS: -0.43 Total: -55.06 kcal Atomic # 8 Polarization: -25.57 SS G_CDS: -0.18 Total: -25.74 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -4.71 Total: 14.35 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -34.72 -7.93 -42.65 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200202150.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.846 kcal (2) G-P(sol) polarization free energy of solvation -34.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds