Wall clock time and date at job start Wed Apr 1 2020 01:53:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42895 * 114.00204 * 2 1 4 4 H 1.09002 * 109.46880 * 329.99601 * 3 2 1 5 5 C 1.52997 * 109.47503 * 89.99725 * 3 2 1 6 6 C 1.52999 * 109.47162 * 210.00222 * 3 2 1 7 7 C 1.52999 * 109.47451 * 64.99269 * 6 3 2 8 8 C 1.50699 * 109.47201 * 180.02562 * 7 6 3 9 9 O 1.21289 * 120.00151 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00178 * 180.02562 * 8 7 6 11 11 C 1.46923 * 120.63080 * 359.71936 * 10 8 7 12 12 C 1.53622 * 108.54187 * 126.36910 * 11 10 8 13 13 C 1.53035 * 109.24387 * 54.86134 * 12 11 10 14 14 N 1.46903 * 109.46109 * 178.48974 * 13 12 11 15 15 C 1.46900 * 110.99631 * 275.06276 * 14 13 12 16 16 C 1.50704 * 109.46638 * 179.97438 * 15 14 13 17 17 O 1.21282 * 120.00257 * 0.02562 * 16 15 14 18 18 N 1.34776 * 119.99668 * 180.02562 * 16 15 14 19 19 C 1.37097 * 119.99931 * 180.02562 * 18 16 15 20 20 H 1.07994 * 120.00019 * 359.97438 * 19 18 16 21 21 C 1.38948 * 119.99840 * 179.97438 * 19 18 16 22 22 N 1.31413 * 120.00357 * 359.97438 * 21 19 18 23 23 Si 1.86808 * 120.00026 * 179.97438 * 21 19 18 24 24 H 1.48509 * 109.46732 * 359.97438 * 23 21 19 25 25 H 1.48495 * 109.47181 * 119.99456 * 23 21 19 26 26 H 1.48500 * 109.46925 * 240.00003 * 23 21 19 27 27 C 1.53041 * 109.53346 * 298.50839 * 13 12 11 28 28 C 1.46926 * 120.63019 * 179.97438 * 10 8 7 29 29 H 1.09000 * 109.46567 * 60.00876 * 1 2 3 30 30 H 1.09001 * 109.47118 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47054 * 300.00226 * 1 2 3 32 32 H 1.09002 * 109.47153 * 60.00043 * 5 3 2 33 33 H 1.09001 * 109.46832 * 300.00234 * 5 3 2 34 34 H 1.09004 * 109.47261 * 180.02562 * 5 3 2 35 35 H 1.08998 * 109.47565 * 185.00018 * 6 3 2 36 36 H 1.09000 * 109.46738 * 304.99499 * 6 3 2 37 37 H 1.08996 * 109.47443 * 300.00108 * 7 6 3 38 38 H 1.09000 * 109.46961 * 60.00367 * 7 6 3 39 39 H 1.09000 * 109.58954 * 246.20721 * 11 10 8 40 40 H 1.09006 * 109.58600 * 6.62619 * 11 10 8 41 41 H 1.09002 * 109.63624 * 294.86184 * 12 11 10 42 42 H 1.09006 * 109.42787 * 174.72555 * 12 11 10 43 43 H 1.08997 * 109.45383 * 58.51667 * 13 12 11 44 44 H 1.00904 * 111.00082 * 151.10909 * 14 13 12 45 45 H 1.08997 * 109.47477 * 300.00133 * 15 14 13 46 46 H 1.08999 * 109.46781 * 60.00330 * 15 14 13 47 47 H 0.97000 * 120.00171 * 359.97438 * 18 16 15 48 48 H 0.97005 * 119.99938 * 180.02562 * 22 21 19 49 49 H 1.09005 * 109.49882 * 301.41081 * 27 13 12 50 50 H 1.09005 * 109.52291 * 181.33773 * 27 13 12 51 51 H 1.09000 * 109.59269 * 353.37477 * 28 10 8 52 52 H 1.08999 * 109.58712 * 113.65785 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9993 -0.5139 5 6 2.2177 1.7714 1.4424 6 6 3.3589 1.2632 -0.7213 7 6 3.1383 0.9182 -2.1955 8 6 4.4668 0.8760 -2.9057 9 8 5.4894 1.0994 -2.2930 10 7 4.5186 0.5900 -4.2218 11 6 3.2890 0.3112 -4.9762 12 6 3.2426 1.2432 -6.1965 13 6 4.5291 1.0758 -7.0082 14 7 4.4741 1.9385 -8.1960 15 6 3.7654 1.2732 -9.2974 16 6 3.7287 2.1867 -10.4954 17 8 4.2427 3.2837 -10.4376 18 7 3.1246 1.7846 -11.6312 19 6 3.0917 2.6154 -12.7212 20 1 3.5493 3.5922 -12.6697 21 6 2.4694 2.2006 -13.8923 22 7 1.9129 1.0117 -13.9551 23 14 2.4238 3.3328 -15.3774 24 1 3.1155 4.6057 -15.0507 25 1 3.1071 2.6770 -16.5211 26 1 1.0120 3.6162 -15.7406 27 6 5.7320 1.4691 -6.1477 28 6 5.8061 0.5458 -4.9281 29 1 -0.3632 0.5137 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 2.8829 1.0775 1.9563 33 1 1.2568 1.8015 1.9562 34 1 2.6607 2.7674 1.4424 35 1 3.8428 2.2368 -0.6444 36 1 3.9931 0.5051 -0.2617 37 1 2.6546 -0.0555 -2.2724 38 1 2.5042 1.6763 -2.6551 39 1 3.2904 -0.7277 -5.3062 40 1 2.4217 0.4940 -4.3418 41 1 3.1540 2.2776 -5.8642 42 1 2.3846 0.9853 -6.8173 43 1 4.6295 0.0359 -7.3190 44 1 5.3999 2.2217 -8.4804 45 1 4.2844 0.3510 -9.5589 46 1 2.7468 1.0413 -8.9864 47 1 2.7139 0.9071 -11.6776 48 1 1.4788 0.7221 -14.7728 49 1 5.6200 2.5014 -5.8159 50 1 6.6462 1.3725 -6.7335 51 1 6.6002 0.8833 -4.2621 52 1 6.0103 -0.4747 -5.2521 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200202151.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:53:22 Heat of formation + Delta-G solvation = -130.326368 kcal Electronic energy + Delta-G solvation = -29623.299628 eV Core-core repulsion = 25429.260083 eV Total energy + Delta-G solvation = -4194.039545 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.48786 -38.88791 -38.44414 -37.64401 -35.09983 -34.14411 -33.87398 -31.89732 -31.27476 -30.95485 -30.29439 -27.18456 -26.90574 -25.30105 -24.31695 -23.73423 -22.74232 -21.48217 -20.64017 -19.33792 -18.97145 -17.89499 -17.48084 -17.25399 -16.31349 -16.00077 -15.84104 -15.48550 -15.35667 -15.31779 -14.85425 -14.52030 -14.39874 -14.10899 -13.88938 -13.75771 -13.63315 -13.51800 -13.19703 -12.94845 -12.80805 -12.57135 -12.39916 -12.21233 -12.03113 -11.86555 -11.71385 -11.61212 -11.48575 -11.42216 -11.33867 -11.09247 -10.98896 -10.88299 -10.53777 -10.35701 -10.23932 -10.07404 -9.88894 -9.53807 -8.87507 -8.47196 -8.10040 -7.97763 -6.43619 -3.84403 2.44956 2.76107 3.15013 3.25718 3.33036 3.37576 3.88797 4.03659 4.16188 4.26729 4.39832 4.54860 4.60625 4.68149 4.79837 4.87791 4.88600 4.93649 4.95592 4.99339 5.09040 5.12187 5.16623 5.22519 5.23592 5.26188 5.32092 5.36465 5.40482 5.47458 5.49801 5.61280 5.67141 5.69653 5.74621 5.77363 5.86266 5.92292 5.94142 6.03760 6.17710 6.28882 6.33659 6.80789 7.18196 7.21910 7.53771 7.63768 7.98107 8.04921 8.59455 9.16341 9.52549 10.03975 10.74144 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.019062 B = 0.001697 C = 0.001614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.565339 B =16493.266475 C =17344.405009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.385 6.385 3 C 0.083 3.917 4 H 0.062 0.938 5 C -0.175 4.175 6 C -0.100 4.100 7 C -0.139 4.139 8 C 0.516 3.484 9 O -0.546 6.546 10 N -0.612 5.612 11 C 0.106 3.894 12 C -0.124 4.124 13 C 0.088 3.912 14 N -0.665 5.665 15 C 0.051 3.949 16 C 0.440 3.560 17 O -0.583 6.583 18 N -0.564 5.564 19 C -0.299 4.299 20 H 0.104 0.896 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.929 3.071 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.281 1.281 27 C -0.135 4.135 28 C 0.115 3.885 29 H 0.042 0.958 30 H 0.085 0.915 31 H 0.039 0.961 32 H 0.065 0.935 33 H 0.056 0.944 34 H 0.067 0.933 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.099 0.901 38 H 0.091 0.909 39 H 0.070 0.930 40 H 0.087 0.913 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.044 0.956 44 H 0.351 0.649 45 H 0.043 0.957 46 H 0.085 0.915 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.077 0.923 50 H 0.075 0.925 51 H 0.093 0.907 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.862 -5.653 26.468 27.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.304 6.304 3 C 0.025 3.975 4 H 0.080 0.920 5 C -0.232 4.232 6 C -0.138 4.138 7 C -0.178 4.178 8 C 0.305 3.695 9 O -0.424 6.424 10 N -0.346 5.346 11 C -0.017 4.017 12 C -0.163 4.163 13 C -0.022 4.022 14 N -0.298 5.298 15 C -0.081 4.081 16 C 0.226 3.774 17 O -0.467 6.467 18 N -0.201 5.201 19 C -0.429 4.429 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.543 5.543 23 Si 0.756 3.244 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.207 1.207 27 C -0.174 4.174 28 C -0.008 4.008 29 H 0.061 0.939 30 H 0.103 0.897 31 H 0.058 0.942 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.102 0.898 36 H 0.098 0.902 37 H 0.118 0.882 38 H 0.110 0.890 39 H 0.089 0.911 40 H 0.105 0.895 41 H 0.094 0.906 42 H 0.096 0.904 43 H 0.061 0.939 44 H 0.171 0.829 45 H 0.061 0.939 46 H 0.103 0.897 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.096 0.904 50 H 0.094 0.906 51 H 0.112 0.888 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.505 -4.693 26.866 27.315 hybrid contribution -0.097 -0.553 -1.326 1.440 sum -1.602 -5.247 25.540 26.123 Atomic orbital electron populations 1.22789 0.81208 1.02757 0.99946 1.87937 1.19496 1.27864 1.95090 1.22209 0.94875 0.84655 0.95738 0.92011 1.22266 1.02308 1.01909 0.96721 1.21466 0.95616 1.03786 0.92953 1.21676 0.95327 1.04551 0.96295 1.20726 0.91568 0.75710 0.81474 1.90684 1.36485 1.49614 1.65605 1.48168 1.08054 1.69749 1.08602 1.21932 0.86495 0.99529 0.93741 1.22023 0.98353 1.00517 0.95396 1.21479 0.94705 0.95038 0.90999 1.60089 1.24589 1.40800 1.04306 1.21718 0.99855 0.95197 0.91378 1.19822 0.84643 0.88672 0.84277 1.90524 1.50183 1.22546 1.83435 1.41874 1.49711 1.17853 1.10659 1.19758 1.33948 0.99772 0.89381 0.87868 1.25263 0.96670 0.96761 0.99270 1.69621 1.37303 1.18522 1.28882 0.85801 0.77938 0.80020 0.80594 1.19216 1.20766 1.20742 1.22088 0.98211 1.00909 0.96175 1.21554 0.86005 0.99575 0.93702 0.93921 0.89673 0.94203 0.91619 0.92523 0.91405 0.89809 0.90239 0.88248 0.89026 0.91141 0.89470 0.90559 0.90424 0.93854 0.82898 0.93913 0.89705 0.77486 0.91931 0.90418 0.90598 0.88831 0.91564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 10.82 101.05 1.09 1.25 16 2 O -0.38 -3.08 9.88 -35.23 -0.35 -3.43 16 3 C 0.08 0.57 2.72 -26.73 -0.07 0.50 16 4 H 0.06 0.36 7.79 -51.93 -0.40 -0.05 16 5 C -0.17 -1.07 9.53 37.16 0.35 -0.71 16 6 C -0.10 -0.81 4.21 -26.73 -0.11 -0.93 16 7 C -0.14 -1.09 3.94 -27.88 -0.11 -1.20 16 8 C 0.52 5.65 7.70 -10.99 -0.08 5.57 16 9 O -0.55 -7.85 15.40 5.55 0.09 -7.77 16 10 N -0.61 -6.03 2.97 -172.53 -0.51 -6.54 16 11 C 0.11 0.85 6.37 -3.49 -0.02 0.83 16 12 C -0.12 -1.26 5.60 -26.39 -0.15 -1.41 16 13 C 0.09 1.01 2.45 -67.67 -0.17 0.85 16 14 N -0.67 -10.29 5.93 -107.95 -0.64 -10.93 16 15 C 0.05 0.87 5.96 -4.97 -0.03 0.84 16 16 C 0.44 10.26 7.82 -10.98 -0.09 10.17 16 17 O -0.58 -15.74 15.78 5.56 0.09 -15.66 16 18 N -0.56 -14.15 5.29 -10.97 -0.06 -14.21 16 19 C -0.30 -8.30 9.68 -14.93 -0.14 -8.45 16 20 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 21 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 22 N -0.90 -24.32 13.05 55.50 0.72 -23.60 16 23 Si 0.93 20.92 29.55 -169.99 -5.02 15.90 16 24 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 25 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 26 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 27 C -0.14 -1.42 5.36 -26.63 -0.14 -1.56 16 28 C 0.11 1.14 6.43 -3.73 -0.02 1.12 16 29 H 0.04 0.19 8.08 -51.93 -0.42 -0.22 16 30 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.04 0.18 7.87 -51.93 -0.41 -0.22 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.31 7.87 -51.93 -0.41 -0.10 16 34 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.08 0.70 8.10 -51.93 -0.42 0.28 16 36 H 0.08 0.76 8.10 -51.93 -0.42 0.34 16 37 H 0.10 0.72 7.61 -51.93 -0.40 0.32 16 38 H 0.09 0.59 7.70 -51.93 -0.40 0.19 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.09 0.54 5.93 -51.93 -0.31 0.23 16 41 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 42 H 0.08 0.79 7.42 -51.93 -0.39 0.41 16 43 H 0.04 0.48 7.80 -51.93 -0.40 0.08 16 44 H 0.35 5.69 8.03 -39.29 -0.32 5.37 16 45 H 0.04 0.66 8.05 -51.93 -0.42 0.24 16 46 H 0.08 1.32 7.41 -51.93 -0.38 0.93 16 47 H 0.39 9.36 7.90 -40.82 -0.32 9.04 16 48 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 49 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 50 H 0.08 0.74 8.10 -51.93 -0.42 0.32 16 51 H 0.09 1.04 7.01 -51.93 -0.36 0.67 16 52 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 416.50 15.07 6.28 6.28 Total: -1.00 -33.52 416.50 -8.27 -41.79 By element: Atomic # 1 Polarization: 19.89 SS G_CDS: -9.07 Total: 10.82 kcal Atomic # 6 Polarization: 7.14 SS G_CDS: 0.21 Total: 7.35 kcal Atomic # 7 Polarization: -54.79 SS G_CDS: -0.49 Total: -55.28 kcal Atomic # 8 Polarization: -26.68 SS G_CDS: -0.18 Total: -26.85 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -33.52 -8.27 -41.79 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200202151.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.537 kcal (2) G-P(sol) polarization free energy of solvation -33.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds