Wall clock time and date at job start Wed Apr 1 2020 01:53:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42895 * 114.00204 * 2 1 4 4 H 1.09002 * 109.46880 * 329.99601 * 3 2 1 5 5 C 1.52997 * 109.47503 * 89.99725 * 3 2 1 6 6 C 1.52999 * 109.47162 * 210.00222 * 3 2 1 7 7 C 1.52999 * 109.47451 * 64.99269 * 6 3 2 8 8 C 1.50699 * 109.47201 * 180.02562 * 7 6 3 9 9 O 1.21289 * 120.00151 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00178 * 180.02562 * 8 7 6 11 11 C 1.46923 * 120.63080 * 359.71936 * 10 8 7 12 12 C 1.53622 * 108.54187 * 126.36910 * 11 10 8 13 13 C 1.53035 * 109.24387 * 54.86134 * 12 11 10 14 14 N 1.46903 * 109.46109 * 178.48974 * 13 12 11 15 15 C 1.46900 * 110.99631 * 275.06276 * 14 13 12 16 16 C 1.50704 * 109.46638 * 179.97438 * 15 14 13 17 17 O 1.21282 * 120.00257 * 0.02562 * 16 15 14 18 18 N 1.34776 * 119.99668 * 180.02562 * 16 15 14 19 19 C 1.37097 * 119.99931 * 180.02562 * 18 16 15 20 20 H 1.07994 * 120.00019 * 359.97438 * 19 18 16 21 21 C 1.38948 * 119.99840 * 179.97438 * 19 18 16 22 22 N 1.31413 * 120.00357 * 359.97438 * 21 19 18 23 23 Si 1.86808 * 120.00026 * 179.97438 * 21 19 18 24 24 H 1.48509 * 109.46732 * 359.97438 * 23 21 19 25 25 H 1.48495 * 109.47181 * 119.99456 * 23 21 19 26 26 H 1.48500 * 109.46925 * 240.00003 * 23 21 19 27 27 C 1.53041 * 109.53346 * 298.50839 * 13 12 11 28 28 C 1.46926 * 120.63019 * 179.97438 * 10 8 7 29 29 H 1.09000 * 109.46567 * 60.00876 * 1 2 3 30 30 H 1.09001 * 109.47118 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47054 * 300.00226 * 1 2 3 32 32 H 1.09002 * 109.47153 * 60.00043 * 5 3 2 33 33 H 1.09001 * 109.46832 * 300.00234 * 5 3 2 34 34 H 1.09004 * 109.47261 * 180.02562 * 5 3 2 35 35 H 1.08998 * 109.47565 * 185.00018 * 6 3 2 36 36 H 1.09000 * 109.46738 * 304.99499 * 6 3 2 37 37 H 1.08996 * 109.47443 * 300.00108 * 7 6 3 38 38 H 1.09000 * 109.46961 * 60.00367 * 7 6 3 39 39 H 1.09000 * 109.58954 * 246.20721 * 11 10 8 40 40 H 1.09006 * 109.58600 * 6.62619 * 11 10 8 41 41 H 1.09002 * 109.63624 * 294.86184 * 12 11 10 42 42 H 1.09006 * 109.42787 * 174.72555 * 12 11 10 43 43 H 1.08997 * 109.45383 * 58.51667 * 13 12 11 44 44 H 1.00904 * 111.00082 * 151.10909 * 14 13 12 45 45 H 1.08997 * 109.47477 * 300.00133 * 15 14 13 46 46 H 1.08999 * 109.46781 * 60.00330 * 15 14 13 47 47 H 0.97000 * 120.00171 * 359.97438 * 18 16 15 48 48 H 0.97005 * 119.99938 * 180.02562 * 22 21 19 49 49 H 1.09005 * 109.49882 * 301.41081 * 27 13 12 50 50 H 1.09005 * 109.52291 * 181.33773 * 27 13 12 51 51 H 1.09000 * 109.59269 * 353.37477 * 28 10 8 52 52 H 1.08999 * 109.58712 * 113.65785 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9993 -0.5139 5 6 2.2177 1.7714 1.4424 6 6 3.3589 1.2632 -0.7213 7 6 3.1383 0.9182 -2.1955 8 6 4.4668 0.8760 -2.9057 9 8 5.4894 1.0994 -2.2930 10 7 4.5186 0.5900 -4.2218 11 6 3.2890 0.3112 -4.9762 12 6 3.2426 1.2432 -6.1965 13 6 4.5291 1.0758 -7.0082 14 7 4.4741 1.9385 -8.1960 15 6 3.7654 1.2732 -9.2974 16 6 3.7287 2.1867 -10.4954 17 8 4.2427 3.2837 -10.4376 18 7 3.1246 1.7846 -11.6312 19 6 3.0917 2.6154 -12.7212 20 1 3.5493 3.5922 -12.6697 21 6 2.4694 2.2006 -13.8923 22 7 1.9129 1.0117 -13.9551 23 14 2.4238 3.3328 -15.3774 24 1 3.1155 4.6057 -15.0507 25 1 3.1071 2.6770 -16.5211 26 1 1.0120 3.6162 -15.7406 27 6 5.7320 1.4691 -6.1477 28 6 5.8061 0.5458 -4.9281 29 1 -0.3632 0.5137 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 2.8829 1.0775 1.9563 33 1 1.2568 1.8015 1.9562 34 1 2.6607 2.7674 1.4424 35 1 3.8428 2.2368 -0.6444 36 1 3.9931 0.5051 -0.2617 37 1 2.6546 -0.0555 -2.2724 38 1 2.5042 1.6763 -2.6551 39 1 3.2904 -0.7277 -5.3062 40 1 2.4217 0.4940 -4.3418 41 1 3.1540 2.2776 -5.8642 42 1 2.3846 0.9853 -6.8173 43 1 4.6295 0.0359 -7.3190 44 1 5.3999 2.2217 -8.4804 45 1 4.2844 0.3510 -9.5589 46 1 2.7468 1.0413 -8.9864 47 1 2.7139 0.9071 -11.6776 48 1 1.4788 0.7221 -14.7728 49 1 5.6200 2.5014 -5.8159 50 1 6.6462 1.3725 -6.7335 51 1 6.6002 0.8833 -4.2621 52 1 6.0103 -0.4747 -5.2521 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001200202151.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:53:21 Heat of formation + Delta-G solvation = -154.717768 kcal Electronic energy + Delta-G solvation = -29624.357318 eV Core-core repulsion = 25429.260083 eV Total energy + Delta-G solvation = -4195.097235 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.31287 -40.19315 -39.37503 -38.73011 -36.32611 -35.74284 -34.75560 -33.29758 -32.70351 -31.92521 -30.93975 -28.40616 -27.52684 -26.50669 -25.50449 -24.62899 -23.67679 -22.08075 -21.48872 -21.05269 -19.95279 -19.78398 -18.31547 -17.80788 -17.71312 -17.02201 -16.72945 -16.61587 -16.36667 -16.12922 -15.98628 -15.84858 -15.52396 -15.28430 -15.09310 -14.82539 -14.66797 -14.17730 -14.09576 -13.90024 -13.69925 -13.51397 -13.38251 -13.26323 -13.15762 -13.12879 -12.89570 -12.58581 -12.42081 -12.39698 -12.24059 -12.14257 -12.11556 -12.03958 -11.78219 -11.52189 -11.51273 -11.42880 -10.81069 -10.49520 -10.33389 -10.00948 -9.68666 -9.31917 -8.46691 -5.95199 1.36760 1.42343 1.56202 1.62778 2.01450 2.06033 2.29376 2.89858 2.90931 3.20795 3.45468 3.52038 3.78529 3.81883 3.87517 4.08062 4.11914 4.18559 4.25827 4.30349 4.34626 4.36455 4.46497 4.49278 4.54917 4.56429 4.58229 4.64215 4.65346 4.69986 4.77347 4.80750 4.82130 4.86948 4.93491 4.99843 5.03974 5.06447 5.17051 5.22891 5.33653 5.37481 5.41840 5.55342 5.92233 6.14463 6.34760 6.40427 6.41049 6.60798 7.13330 7.16843 7.57063 8.12672 8.70773 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.019062 B = 0.001697 C = 0.001614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.565339 B =16493.266475 C =17344.405009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.405 6.405 3 C 0.085 3.915 4 H 0.078 0.922 5 C -0.174 4.174 6 C -0.098 4.098 7 C -0.131 4.131 8 C 0.510 3.490 9 O -0.589 6.589 10 N -0.612 5.612 11 C 0.110 3.890 12 C -0.121 4.121 13 C 0.089 3.911 14 N -0.680 5.680 15 C 0.067 3.933 16 C 0.437 3.563 17 O -0.625 6.625 18 N -0.573 5.573 19 C -0.334 4.334 20 H 0.077 0.923 21 C -0.012 4.012 22 N -0.919 5.919 23 Si 0.992 3.008 24 H -0.275 1.275 25 H -0.271 1.271 26 H -0.271 1.271 27 C -0.127 4.127 28 C 0.117 3.883 29 H 0.053 0.947 30 H 0.092 0.908 31 H 0.046 0.954 32 H 0.054 0.946 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.057 0.943 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.089 0.911 40 H 0.111 0.889 41 H 0.059 0.941 42 H 0.082 0.918 43 H 0.059 0.941 44 H 0.344 0.656 45 H 0.067 0.933 46 H 0.106 0.894 47 H 0.397 0.603 48 H 0.278 0.722 49 H 0.058 0.942 50 H 0.081 0.919 51 H 0.078 0.922 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.430 -6.763 26.586 27.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.325 6.325 3 C 0.028 3.972 4 H 0.096 0.904 5 C -0.232 4.232 6 C -0.136 4.136 7 C -0.170 4.170 8 C 0.300 3.700 9 O -0.470 6.470 10 N -0.345 5.345 11 C -0.012 4.012 12 C -0.160 4.160 13 C -0.020 4.020 14 N -0.313 5.313 15 C -0.065 4.065 16 C 0.224 3.776 17 O -0.512 6.512 18 N -0.210 5.210 19 C -0.464 4.464 20 H 0.095 0.905 21 C -0.212 4.212 22 N -0.560 5.560 23 Si 0.816 3.184 24 H -0.199 1.199 25 H -0.196 1.196 26 H -0.196 1.196 27 C -0.165 4.165 28 C -0.006 4.006 29 H 0.071 0.929 30 H 0.110 0.890 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.083 0.917 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.076 0.924 37 H 0.130 0.870 38 H 0.130 0.870 39 H 0.107 0.893 40 H 0.129 0.871 41 H 0.078 0.922 42 H 0.101 0.899 43 H 0.077 0.923 44 H 0.163 0.837 45 H 0.084 0.916 46 H 0.124 0.876 47 H 0.231 0.769 48 H 0.087 0.913 49 H 0.077 0.923 50 H 0.100 0.900 51 H 0.096 0.904 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.107 -5.844 26.986 27.786 hybrid contribution 0.412 -0.209 -1.328 1.407 sum -2.695 -6.053 25.657 26.499 Atomic orbital electron populations 1.22944 0.79931 1.03560 1.00784 1.87908 1.20975 1.28404 1.95226 1.22197 0.94279 0.84754 0.95989 0.90444 1.22265 1.02551 1.01951 0.96417 1.21405 0.96137 1.02674 0.93357 1.21684 0.93794 1.05850 0.95687 1.21301 0.92144 0.74836 0.81716 1.90666 1.38136 1.51590 1.66575 1.48291 1.08642 1.69012 1.08514 1.22069 0.86381 0.99845 0.92953 1.21995 0.97643 1.00233 0.96131 1.21593 0.95799 0.95055 0.89589 1.60124 1.24182 1.42150 1.04821 1.21573 1.01702 0.94161 0.89045 1.20948 0.82546 0.88841 0.85232 1.90494 1.51501 1.24816 1.84359 1.41934 1.50430 1.17815 1.10855 1.19691 1.35685 0.99716 0.91279 0.90467 1.26011 0.95719 0.98166 1.01275 1.69671 1.37135 1.19352 1.29840 0.84889 0.78312 0.77875 0.77360 1.19947 1.19592 1.19581 1.21991 0.98270 0.99949 0.96318 1.21507 0.86003 1.00161 0.92973 0.92852 0.88986 0.93579 0.92711 0.91701 0.90760 0.90486 0.92369 0.86979 0.86983 0.89316 0.87127 0.92176 0.89928 0.92294 0.83732 0.91564 0.87579 0.76909 0.91296 0.92281 0.90002 0.90363 0.89886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 10.82 113.37 1.23 1.43 16 2 O -0.41 -5.85 9.88 -148.98 -1.47 -7.32 16 3 C 0.09 1.05 2.72 30.59 0.08 1.13 16 4 H 0.08 0.71 7.79 -2.39 -0.02 0.69 16 5 C -0.17 -1.97 9.53 71.98 0.69 -1.29 16 6 C -0.10 -1.53 4.21 30.59 0.13 -1.40 16 7 C -0.13 -1.82 3.94 29.85 0.12 -1.70 16 8 C 0.51 10.69 7.70 87.66 0.67 11.37 16 9 O -0.59 -17.19 15.40 -3.06 -0.05 -17.24 16 10 N -0.61 -11.01 2.97 -818.15 -2.43 -13.43 16 11 C 0.11 1.41 6.37 86.51 0.55 1.96 16 12 C -0.12 -2.17 5.60 30.82 0.17 -2.00 16 13 C 0.09 1.87 2.45 44.94 0.11 1.98 16 14 N -0.68 -20.28 5.93 -495.44 -2.94 -23.22 16 15 C 0.07 2.18 5.96 85.56 0.51 2.69 16 16 C 0.44 20.37 7.82 87.66 0.69 21.06 16 17 O -0.63 -34.50 15.78 -3.04 -0.05 -34.54 16 18 N -0.57 -28.91 5.29 -307.00 -1.62 -30.53 16 19 C -0.33 -18.85 9.68 84.04 0.81 -18.04 16 20 H 0.08 4.68 7.16 -2.91 -0.02 4.66 16 21 C -0.01 -0.63 5.50 84.93 0.47 -0.16 16 22 N -0.92 -48.84 13.05 21.66 0.28 -48.56 16 23 Si 0.99 42.58 29.55 68.60 2.03 44.61 16 24 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 25 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 26 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 27 C -0.13 -2.54 5.36 30.66 0.16 -2.38 16 28 C 0.12 2.19 6.43 86.35 0.55 2.75 16 29 H 0.05 0.35 8.08 -2.39 -0.02 0.33 16 30 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.05 0.34 7.87 -2.39 -0.02 0.32 16 32 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.06 0.62 7.87 -2.39 -0.02 0.60 16 34 H 0.07 0.72 8.14 -2.38 -0.02 0.71 16 35 H 0.08 1.28 8.10 -2.39 -0.02 1.26 16 36 H 0.06 1.15 8.10 -2.39 -0.02 1.13 16 37 H 0.11 1.31 7.61 -2.39 -0.02 1.30 16 38 H 0.11 1.12 7.70 -2.39 -0.02 1.10 16 39 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.11 0.93 5.93 -2.38 -0.01 0.92 16 41 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.08 1.43 7.42 -2.38 -0.02 1.41 16 43 H 0.06 1.10 7.80 -2.39 -0.02 1.08 16 44 H 0.34 11.03 8.03 -89.69 -0.72 10.31 16 45 H 0.07 1.86 8.05 -2.39 -0.02 1.84 16 46 H 0.11 3.01 7.41 -2.39 -0.02 2.99 16 47 H 0.40 18.86 7.90 -92.71 -0.73 18.12 16 48 H 0.28 13.76 8.31 -92.70 -0.77 12.99 16 49 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 50 H 0.08 1.53 8.10 -2.38 -0.02 1.52 16 51 H 0.08 1.74 7.01 -2.39 -0.02 1.73 16 52 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -73.93 416.50 0.17 -73.76 By element: Atomic # 1 Polarization: 39.61 SS G_CDS: -0.53 Total: 39.08 kcal Atomic # 6 Polarization: 10.44 SS G_CDS: 6.95 Total: 17.39 kcal Atomic # 7 Polarization: -109.03 SS G_CDS: -6.71 Total: -115.74 kcal Atomic # 8 Polarization: -57.54 SS G_CDS: -1.57 Total: -59.10 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.61 kcal Total: -73.93 0.17 -73.76 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200202151.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.955 kcal (2) G-P(sol) polarization free energy of solvation -73.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds