Wall clock time and date at job start Wed Apr 1 2020 01:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.54179 * 2 1 4 4 C 1.53098 * 109.51069 * 239.89175 * 2 1 3 5 5 N 1.47011 * 109.26034 * 183.21883 * 4 2 1 6 6 C 1.46894 * 110.99996 * 182.38921 * 5 4 2 7 7 C 1.47017 * 110.75365 * 58.61390 * 5 4 2 8 8 C 1.53097 * 109.25651 * 301.38687 * 7 5 4 9 9 H 1.09000 * 109.53943 * 296.88910 * 8 7 5 10 10 C 1.50705 * 109.50387 * 176.78452 * 8 7 5 11 11 O 1.21281 * 119.99681 * 245.21466 * 10 8 7 12 12 N 1.34773 * 120.00060 * 65.21864 * 10 8 7 13 13 C 1.47505 * 118.75899 * 0.02562 * 12 10 8 14 14 C 1.53570 * 111.03340 * 138.35154 * 13 12 10 15 15 C 1.51542 * 109.57569 * 320.01978 * 14 13 12 16 16 O 1.42152 * 108.74874 * 91.40125 * 15 14 13 17 17 C 1.38020 * 119.44552 * 272.76646 * 16 15 14 18 18 H 1.09003 * 109.46507 * 303.43271 * 17 16 15 19 19 C 1.52997 * 109.47217 * 183.43615 * 17 16 15 20 20 N 1.46505 * 109.47212 * 64.98836 * 19 17 16 21 21 C 1.36936 * 119.99992 * 179.97438 * 20 19 17 22 22 H 1.08006 * 119.99834 * 0.02562 * 21 20 19 23 23 C 1.38801 * 120.00093 * 180.02562 * 21 20 19 24 24 N 1.31619 * 120.00176 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 120.00265 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.46725 * 59.99976 * 25 23 21 27 27 H 1.48498 * 109.47172 * 179.97438 * 25 23 21 28 28 H 1.48501 * 109.46920 * 300.00189 * 25 23 21 29 29 C 1.45125 * 118.75622 * 180.02562 * 12 10 8 30 30 O 1.43011 * 109.26191 * 56.84630 * 8 7 5 31 31 H 1.08995 * 109.47085 * 299.89406 * 1 2 3 32 32 H 1.09009 * 109.46699 * 59.89222 * 1 2 3 33 33 H 1.08998 * 109.46906 * 179.89207 * 1 2 3 34 34 H 1.09007 * 109.50461 * 303.15245 * 4 2 1 35 35 H 1.09000 * 109.50618 * 63.27950 * 4 2 1 36 36 H 1.09002 * 109.47361 * 63.95744 * 6 5 4 37 37 H 1.08998 * 109.47155 * 183.95369 * 6 5 4 38 38 H 1.08996 * 109.47344 * 303.95111 * 6 5 4 39 39 H 1.08995 * 109.50865 * 181.44883 * 7 5 4 40 40 H 1.09005 * 109.50625 * 61.31650 * 7 5 4 41 41 H 1.09002 * 109.16437 * 258.75017 * 13 12 10 42 42 H 1.09002 * 109.16552 * 17.94666 * 13 12 10 43 43 H 1.08998 * 109.45349 * 80.04957 * 14 13 12 44 44 H 1.08994 * 109.45437 * 199.98925 * 14 13 12 45 45 H 1.08993 * 109.58666 * 211.17630 * 15 14 13 46 46 H 1.08992 * 109.59105 * 331.62610 * 15 14 13 47 47 H 1.09002 * 109.47153 * 304.98828 * 19 17 16 48 48 H 1.09001 * 109.46832 * 184.99019 * 19 17 16 49 49 H 0.96996 * 119.99606 * 0.02562 * 20 19 17 50 50 H 0.97001 * 120.00803 * 179.97438 * 24 23 21 51 51 H 1.08996 * 109.46289 * 149.27976 * 29 12 10 52 52 H 1.09001 * 109.46284 * 29.31364 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8946 1.0272 0.0000 4 6 2.0413 -0.7239 -1.2484 5 7 3.5093 -0.7885 -1.2044 6 6 4.0447 -1.4269 -2.4141 7 6 3.9640 -1.4884 0.0059 8 6 3.4334 -0.7568 1.2417 9 1 3.8533 0.2484 1.2786 10 6 3.8297 -1.5136 2.4832 11 8 2.9779 -2.0201 3.1824 12 7 5.1305 -1.6274 2.8166 13 6 6.1435 -1.0001 1.9470 14 6 7.2375 -0.3160 2.7799 15 6 6.6090 0.3779 3.9716 16 8 6.5949 -0.5239 5.0703 17 6 5.5322 -1.3914 5.2225 18 1 4.6033 -0.8230 5.2701 19 6 5.7076 -2.1910 6.5150 20 7 5.6358 -1.2845 7.6637 21 6 5.7665 -1.7778 8.9344 22 1 5.9229 -2.8352 9.0898 23 6 5.6980 -0.9191 10.0227 24 7 5.5068 0.3693 9.8334 25 14 5.8770 -1.5919 11.7562 26 1 7.2023 -2.2465 11.8986 27 1 5.7677 -0.4787 12.7329 28 1 4.8039 -2.5853 12.0148 29 6 5.4818 -2.3626 4.0176 30 8 2.0075 -0.6762 1.1662 31 1 -0.3633 0.5122 0.8909 32 1 -0.3633 0.5156 -0.8891 33 1 -0.3633 -1.0277 -0.0019 34 1 1.6332 -1.7343 -1.2760 35 1 1.7274 -0.1795 -2.1390 36 1 3.8063 -0.8147 -3.2839 37 1 5.1266 -1.5252 -2.3247 38 1 3.5987 -2.4145 -2.5315 39 1 5.0536 -1.5021 0.0309 40 1 3.5866 -2.5110 -0.0016 41 1 6.5985 -1.7653 1.3181 42 1 5.6599 -0.2576 1.3123 43 1 7.9490 -1.0642 3.1292 44 1 7.7564 0.4185 2.1643 45 1 7.1938 1.2604 4.2307 46 1 5.5884 0.6718 3.7269 47 1 6.6771 -2.6892 6.5053 48 1 4.9165 -2.9371 6.5908 49 1 5.4950 -0.3351 7.5241 50 1 5.4586 0.9695 10.5939 51 1 6.4582 -2.8286 3.8856 52 1 4.7338 -3.1334 4.2033 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200796395.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:32:31 Heat of formation + Delta-G solvation = -83.302984 kcal Electronic energy + Delta-G solvation = -31927.341785 eV Core-core repulsion = 27735.341327 eV Total energy + Delta-G solvation = -4192.000458 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.08876 -39.73268 -38.25285 -36.25209 -35.63312 -34.55892 -33.38200 -32.78141 -30.89717 -30.26392 -28.54295 -27.53077 -26.62475 -25.87033 -24.50260 -22.94020 -22.57065 -21.68968 -21.02531 -20.81162 -19.40860 -17.60571 -17.20448 -17.06125 -16.53631 -16.43127 -16.20471 -15.94088 -15.65148 -15.35725 -14.90476 -14.59380 -14.46115 -14.19535 -13.77194 -13.66966 -13.38493 -13.16306 -13.01437 -12.92781 -12.81916 -12.61716 -12.55573 -12.41164 -12.19554 -12.12957 -11.87023 -11.66217 -11.55187 -11.35466 -11.09627 -10.92058 -10.76745 -10.72213 -10.24362 -10.01818 -9.98142 -9.71505 -9.60586 -9.39121 -8.96123 -8.78056 -8.57955 -6.80048 -5.64656 -2.92865 2.40052 2.51151 3.27282 3.47485 3.51992 3.55352 3.57015 3.97888 4.17074 4.33595 4.37232 4.52419 4.56424 4.62581 4.68113 4.72092 4.81004 4.88977 4.92376 4.96024 5.01997 5.14744 5.22178 5.23395 5.27045 5.32122 5.36406 5.37326 5.40947 5.44947 5.48605 5.61967 5.64505 5.68102 5.82482 5.85312 5.97409 6.01067 6.12479 6.33045 6.38008 6.38186 6.44776 6.70919 6.78070 6.82909 7.14821 7.78427 8.02787 8.05516 8.53596 9.64869 10.23384 10.59323 11.58292 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.018454 B = 0.002538 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.897719 B =11030.642662 C =11817.192494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.087 3.913 3 H 0.070 0.930 4 C 0.020 3.980 5 N -0.540 5.540 6 C 0.024 3.976 7 C 0.022 3.978 8 C 0.080 3.920 9 H 0.092 0.908 10 C 0.514 3.486 11 O -0.505 6.505 12 N -0.606 5.606 13 C 0.099 3.901 14 C -0.167 4.167 15 C 0.073 3.927 16 O -0.368 6.368 17 C 0.088 3.912 18 H 0.053 0.947 19 C 0.166 3.834 20 N -0.726 5.726 21 C -0.237 4.237 22 H 0.070 0.930 23 C -0.015 4.015 24 N -0.933 5.933 25 Si 0.908 3.092 26 H -0.286 1.286 27 H -0.292 1.292 28 H -0.286 1.286 29 C 0.082 3.918 30 O -0.351 6.351 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.064 0.936 34 H 0.046 0.954 35 H 0.089 0.911 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.029 0.971 39 H 0.098 0.902 40 H 0.050 0.950 41 H 0.069 0.931 42 H 0.085 0.915 43 H 0.083 0.917 44 H 0.086 0.914 45 H 0.090 0.910 46 H 0.046 0.954 47 H 0.027 0.973 48 H 0.035 0.965 49 H 0.387 0.613 50 H 0.254 0.746 51 H 0.085 0.915 52 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.850 -0.490 -30.727 30.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.029 3.971 3 H 0.088 0.912 4 C -0.108 4.108 5 N -0.265 5.265 6 C -0.124 4.124 7 C -0.107 4.107 8 C 0.019 3.981 9 H 0.109 0.891 10 C 0.299 3.701 11 O -0.378 6.378 12 N -0.342 5.342 13 C -0.023 4.023 14 C -0.205 4.205 15 C -0.004 4.004 16 O -0.286 6.286 17 C 0.028 3.972 18 H 0.071 0.929 19 C 0.038 3.962 20 N -0.370 5.370 21 C -0.368 4.368 22 H 0.088 0.912 23 C -0.211 4.211 24 N -0.582 5.582 25 Si 0.739 3.261 26 H -0.213 1.213 27 H -0.218 1.218 28 H -0.213 1.213 29 C -0.041 4.041 30 O -0.270 6.270 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.083 0.917 34 H 0.064 0.936 35 H 0.107 0.893 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.047 0.953 39 H 0.116 0.884 40 H 0.068 0.932 41 H 0.087 0.913 42 H 0.103 0.897 43 H 0.102 0.898 44 H 0.105 0.895 45 H 0.108 0.892 46 H 0.064 0.936 47 H 0.045 0.955 48 H 0.052 0.948 49 H 0.221 0.779 50 H 0.064 0.936 51 H 0.104 0.896 52 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -2.095 -0.491 -29.931 30.009 hybrid contribution -0.184 -0.696 0.287 0.775 sum -2.279 -1.187 -29.645 29.756 Atomic orbital electron populations 1.21736 0.92169 1.03295 1.02958 1.22253 0.95375 0.95650 0.83837 0.91216 1.22912 0.87499 1.00670 0.99693 1.62232 1.09382 1.52550 1.02301 1.22397 1.00547 0.97323 0.92093 1.22888 1.01755 0.96530 0.89500 1.21895 0.83913 0.99628 0.92704 0.89075 1.20117 0.82710 0.81029 0.86237 1.90769 1.49124 1.45737 1.52170 1.47859 1.05473 1.54648 1.26175 1.22212 0.90271 0.97239 0.92571 1.22524 0.98328 1.01387 0.98252 1.22114 0.99923 0.92244 0.86110 1.86438 1.45236 1.49802 1.47087 1.22291 0.89895 0.90524 0.94486 0.92927 1.20606 0.98585 0.92376 0.84612 1.42220 1.87499 1.06739 1.00551 1.19184 1.41391 0.92889 0.83346 0.91239 1.24733 1.03063 0.95460 0.97828 1.69667 1.56821 1.01963 1.29731 0.86254 0.77835 0.77436 0.84586 1.21326 1.21754 1.21312 1.22465 1.02231 0.95634 0.83761 1.88155 1.18044 1.78267 1.42494 0.91063 0.90749 0.91669 0.93559 0.89272 0.90818 0.90957 0.95274 0.88388 0.93186 0.91251 0.89658 0.89791 0.89549 0.89172 0.93564 0.95480 0.94765 0.77942 0.93574 0.89633 0.88745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 9.57 37.16 0.36 -0.74 16 2 C 0.09 0.80 3.43 -26.68 -0.09 0.71 16 3 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 4 C 0.02 0.16 4.94 -3.71 -0.02 0.14 16 5 N -0.54 -4.17 4.99 -242.60 -1.21 -5.38 16 6 C 0.02 0.14 9.63 60.06 0.58 0.71 16 7 C 0.02 0.19 4.53 -3.71 -0.02 0.17 16 8 C 0.08 0.92 2.37 -27.83 -0.07 0.85 16 9 H 0.09 0.93 7.13 -51.93 -0.37 0.56 16 10 C 0.51 7.44 7.06 -10.98 -0.08 7.37 16 11 O -0.50 -9.71 15.94 -14.27 -0.23 -9.94 16 12 N -0.61 -7.53 2.19 -172.45 -0.38 -7.91 16 13 C 0.10 0.84 4.59 -3.20 -0.01 0.83 16 14 C -0.17 -1.53 5.79 -27.17 -0.16 -1.69 16 15 C 0.07 0.96 6.38 36.42 0.23 1.19 16 16 O -0.37 -6.59 9.38 -26.55 -0.25 -6.84 16 17 C 0.09 1.62 2.68 -25.76 -0.07 1.55 16 18 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 19 C 0.17 3.63 5.92 -4.04 -0.02 3.60 16 20 N -0.73 -19.84 5.54 -59.91 -0.33 -20.17 16 21 C -0.24 -6.99 9.99 -15.06 -0.15 -7.14 16 22 H 0.07 1.96 7.83 -52.48 -0.41 1.55 16 23 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 24 N -0.93 -29.54 13.06 55.49 0.72 -28.82 16 25 Si 0.91 23.28 29.55 -169.99 -5.02 18.25 16 26 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 27 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 28 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 29 C 0.08 1.20 4.87 -3.81 -0.02 1.18 16 30 O -0.35 -4.66 9.65 -55.06 -0.53 -5.19 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.38 8.14 -51.92 -0.42 -0.04 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.05 0.39 8.14 -51.92 -0.42 -0.04 16 35 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.07 0.34 8.08 -51.93 -0.42 -0.08 16 38 H 0.03 0.17 8.14 -51.93 -0.42 -0.26 16 39 H 0.10 0.68 5.26 -51.93 -0.27 0.40 16 40 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.07 0.46 7.67 -51.93 -0.40 0.06 16 42 H 0.09 0.60 5.04 -51.93 -0.26 0.34 16 43 H 0.08 0.85 8.01 -51.93 -0.42 0.43 16 44 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 46 H 0.05 0.62 7.40 -51.93 -0.38 0.24 16 47 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 48 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 49 H 0.39 11.26 7.65 -40.82 -0.31 10.94 16 50 H 0.25 7.76 8.31 -40.82 -0.34 7.42 16 51 H 0.09 1.09 8.11 -51.93 -0.42 0.67 16 52 H 0.09 1.48 7.27 -51.93 -0.38 1.10 16 LS Contribution 400.60 15.07 6.04 6.04 Total: -1.00 -36.73 400.60 -9.92 -46.66 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -9.10 Total: 5.13 kcal Atomic # 6 Polarization: 7.81 SS G_CDS: 0.37 Total: 8.17 kcal Atomic # 7 Polarization: -61.09 SS G_CDS: -1.19 Total: -62.28 kcal Atomic # 8 Polarization: -20.96 SS G_CDS: -1.01 Total: -21.97 kcal Atomic # 14 Polarization: 23.28 SS G_CDS: -5.02 Total: 18.25 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -36.73 -9.92 -46.66 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200796395.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.648 kcal (2) G-P(sol) polarization free energy of solvation -36.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds