Wall clock time and date at job start Wed Apr 1 2020 00:10:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47361 * 2 1 4 4 O 1.42900 * 109.47397 * 119.99648 * 2 1 3 5 5 C 1.42906 * 114.00046 * 89.99799 * 4 2 1 6 6 C 1.50698 * 109.47172 * 180.02562 * 5 4 2 7 7 O 1.21279 * 119.99808 * 0.02562 * 6 5 4 8 8 N 1.34778 * 120.00023 * 180.02562 * 6 5 4 9 9 C 1.46919 * 120.63255 * 179.97438 * 8 6 5 10 10 C 1.53195 * 108.89273 * 126.34238 * 9 8 6 11 11 C 1.53346 * 109.14901 * 54.57640 * 10 9 8 12 12 C 1.53004 * 109.41904 * 178.67276 * 11 10 9 13 13 N 1.46901 * 109.47273 * 295.13166 * 12 11 10 14 14 C 1.46892 * 110.99941 * 179.97438 * 13 12 11 15 15 C 1.50706 * 109.47168 * 179.97438 * 14 13 12 16 16 O 1.21290 * 119.99567 * 0.02562 * 15 14 13 17 17 N 1.34771 * 119.99829 * 180.02562 * 15 14 13 18 18 C 1.37098 * 119.99609 * 180.02562 * 17 15 14 19 19 H 1.07998 * 120.00503 * 359.97438 * 18 17 15 20 20 C 1.38955 * 119.99818 * 180.02562 * 18 17 15 21 21 N 1.31407 * 120.00022 * 359.97438 * 20 18 17 22 22 Si 1.86807 * 119.99819 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47167 * 0.02562 * 22 20 18 24 24 H 1.48506 * 109.46951 * 119.99733 * 22 20 18 25 25 H 1.48489 * 109.47080 * 239.99736 * 22 20 18 26 26 C 1.53034 * 109.61010 * 298.71225 * 11 10 9 27 27 C 1.46933 * 120.62741 * 0.02562 * 8 6 5 28 28 H 1.09001 * 109.47338 * 300.00313 * 1 2 3 29 29 H 1.09002 * 109.46934 * 60.00130 * 1 2 3 30 30 H 1.08996 * 109.47301 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47338 * 239.99687 * 2 1 3 32 32 H 1.08996 * 109.47436 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.46990 * 299.99835 * 3 2 1 34 34 H 1.09001 * 109.47150 * 59.99572 * 3 2 1 35 35 H 1.09001 * 109.46424 * 60.00320 * 5 4 2 36 36 H 1.09001 * 109.47169 * 300.00611 * 5 4 2 37 37 H 1.09002 * 109.58751 * 246.20189 * 9 8 6 38 38 H 1.08996 * 109.58750 * 6.48373 * 9 8 6 39 39 H 1.08997 * 109.49914 * 174.65962 * 10 9 8 40 40 H 1.09002 * 109.49585 * 294.75599 * 10 9 8 41 41 H 1.09001 * 109.42242 * 58.75065 * 11 10 9 42 42 H 1.09001 * 109.46592 * 55.13132 * 12 11 10 43 43 H 1.08997 * 109.47133 * 175.12697 * 12 11 10 44 44 H 1.00898 * 110.99851 * 56.04100 * 13 12 11 45 45 H 1.08997 * 109.47620 * 299.99656 * 14 13 12 46 46 H 1.09009 * 109.47147 * 60.00030 * 14 13 12 47 47 H 0.96994 * 120.00922 * 0.02562 * 17 15 14 48 48 H 0.97007 * 119.99968 * 179.97438 * 21 20 18 49 49 H 1.08994 * 109.50232 * 301.42239 * 26 11 10 50 50 H 1.09007 * 109.52628 * 181.33900 * 26 11 10 51 51 H 1.08994 * 109.58580 * 353.38021 * 27 8 6 52 52 H 1.09006 * 109.57831 * 113.65514 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.2001 -2.0782 0.9887 6 6 2.7003 -2.6833 2.2750 7 8 2.8734 -1.9810 3.2485 8 7 2.9554 -4.0050 2.3436 9 6 3.4440 -4.6094 3.5903 10 6 2.5280 -5.7781 3.9673 11 6 2.4416 -6.7511 2.7852 12 6 1.5544 -7.9377 3.1669 13 7 2.1906 -8.6956 4.2527 14 6 1.3649 -9.8448 4.6466 15 6 2.0485 -10.5966 5.7596 16 8 3.1182 -10.2125 6.1831 17 7 1.4713 -11.6957 6.2841 18 6 2.0930 -12.3793 7.2969 19 1 3.0455 -12.0374 7.6741 20 6 1.4982 -13.5129 7.8373 21 7 0.3395 -13.9293 7.3780 22 14 2.3457 -14.4448 9.2168 23 1 3.6287 -13.7758 9.5509 24 1 1.4691 -14.4598 10.4155 25 1 2.6125 -15.8390 8.7813 26 6 1.8415 -6.0349 1.5733 27 6 2.7511 -4.8685 1.1725 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9564 0.8899 35 1 2.9320 -2.2466 0.1987 36 1 1.2538 -2.5434 0.7126 37 1 4.4609 -4.9742 3.4456 38 1 3.4328 -3.8649 4.3863 39 1 2.9346 -6.2929 4.8377 40 1 1.5326 -5.3997 4.1999 41 1 3.4406 -7.1096 2.5372 42 1 0.5827 -7.5726 3.4995 43 1 1.4219 -8.5858 2.3006 44 1 2.3830 -8.1005 5.0445 45 1 0.3921 -9.4927 4.9897 46 1 1.2307 -10.5063 3.7907 47 1 0.6161 -12.0032 5.9451 48 1 -0.0755 -14.7208 7.7551 49 1 0.8526 -5.6543 1.8284 50 1 1.7587 -6.7340 0.7410 51 1 2.2803 -4.2955 0.3737 52 1 3.7120 -5.2522 0.8295 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001204686544.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:10:47 Heat of formation + Delta-G solvation = -127.440779 kcal Electronic energy + Delta-G solvation = -29363.132688 eV Core-core repulsion = 25169.218271 eV Total energy + Delta-G solvation = -4193.914417 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.59615 -38.88838 -38.31431 -37.69517 -35.59059 -33.93008 -33.30429 -32.77608 -31.58218 -31.20632 -28.81254 -27.79249 -27.39147 -25.72216 -24.07322 -23.41962 -22.45870 -21.80591 -20.72512 -19.42141 -19.18207 -17.90483 -17.68783 -17.19904 -16.50275 -16.22617 -16.04611 -15.54985 -15.13662 -14.95688 -14.70832 -14.56437 -14.47869 -14.12179 -13.91684 -13.77596 -13.60981 -13.42258 -13.16283 -13.07984 -12.86007 -12.65368 -12.46100 -12.43665 -12.37894 -11.90869 -11.82441 -11.58415 -11.55404 -11.51080 -11.20337 -11.08340 -10.98506 -10.77981 -10.53116 -10.34210 -10.22355 -10.13398 -9.94594 -9.52040 -8.96004 -8.45836 -8.06156 -7.95882 -6.41935 -3.82650 2.29655 2.35974 3.16455 3.27067 3.34466 3.37375 3.90901 4.05067 4.12211 4.25976 4.39395 4.44148 4.51036 4.59574 4.61253 4.68133 4.68820 4.77035 4.80466 5.01905 5.03577 5.11325 5.13242 5.22574 5.24232 5.26640 5.32232 5.37202 5.39791 5.46208 5.47159 5.61560 5.71035 5.71783 5.74809 5.75022 5.81275 5.86787 5.94070 5.98282 6.21423 6.23736 6.29220 6.67094 7.05855 7.21817 7.55402 7.65892 7.88224 8.06656 8.61230 9.17995 9.54411 10.05777 10.75888 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.033540 B = 0.001494 C = 0.001473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.619926 B =18731.824199 C =19006.284326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.079 3.921 3 C -0.150 4.150 4 O -0.358 6.358 5 C 0.046 3.954 6 C 0.515 3.485 7 O -0.520 6.520 8 N -0.611 5.611 9 C 0.114 3.886 10 C -0.133 4.133 11 C -0.086 4.086 12 C 0.064 3.936 13 N -0.669 5.669 14 C 0.050 3.950 15 C 0.441 3.559 16 O -0.583 6.583 17 N -0.564 5.564 18 C -0.299 4.299 19 H 0.104 0.896 20 C 0.022 3.978 21 N -0.902 5.902 22 Si 0.929 3.071 23 H -0.268 1.268 24 H -0.282 1.282 25 H -0.281 1.281 26 C -0.129 4.129 27 C 0.106 3.894 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.072 0.928 38 H 0.093 0.907 39 H 0.085 0.915 40 H 0.064 0.936 41 H 0.085 0.915 42 H 0.025 0.975 43 H 0.071 0.929 44 H 0.348 0.652 45 H 0.042 0.958 46 H 0.085 0.915 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.067 0.933 50 H 0.080 0.920 51 H 0.080 0.920 52 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.362 23.603 -20.611 31.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.021 3.979 3 C -0.207 4.207 4 O -0.277 6.277 5 C -0.034 4.034 6 C 0.302 3.698 7 O -0.395 6.395 8 N -0.347 5.347 9 C -0.008 4.008 10 C -0.171 4.171 11 C -0.104 4.104 12 C -0.065 4.065 13 N -0.302 5.302 14 C -0.082 4.082 15 C 0.226 3.774 16 O -0.467 6.467 17 N -0.201 5.201 18 C -0.429 4.429 19 H 0.121 0.879 20 C -0.179 4.179 21 N -0.543 5.543 22 Si 0.756 3.244 23 H -0.192 1.192 24 H -0.208 1.208 25 H -0.207 1.207 26 C -0.168 4.168 27 C -0.016 4.016 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.111 0.889 39 H 0.103 0.897 40 H 0.083 0.917 41 H 0.104 0.896 42 H 0.044 0.956 43 H 0.090 0.910 44 H 0.169 0.831 45 H 0.060 0.940 46 H 0.103 0.897 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.086 0.914 50 H 0.098 0.902 51 H 0.099 0.901 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.224 23.825 -19.967 31.086 hybrid contribution -1.148 -0.682 0.578 1.455 sum -1.372 23.143 -19.389 30.222 Atomic orbital electron populations 1.22318 0.95748 1.02458 1.02902 1.22182 0.93854 0.94083 0.87754 1.21856 1.01959 0.94183 1.02708 1.88077 1.86570 1.17682 1.35328 1.22273 1.01028 0.84162 0.95951 1.20220 0.78006 0.81835 0.89745 1.90732 1.51093 1.60003 1.37644 1.48087 1.66477 1.06702 1.13416 1.21628 0.97262 0.95709 0.86182 1.22072 1.00371 0.95741 0.98931 1.21204 1.00740 0.94184 0.94318 1.21986 0.94828 0.94169 0.95560 1.60123 1.46322 1.10761 1.13035 1.21669 0.94384 0.93743 0.98444 1.19823 0.87564 0.83807 0.86205 1.90521 1.22913 1.69189 1.64103 1.41869 1.21484 1.23699 1.33029 1.19764 1.05310 1.06639 1.11152 0.87852 1.25261 0.96069 0.97420 0.99186 1.69621 1.16337 1.25407 1.42979 0.85803 0.79326 0.79064 0.80174 1.19195 1.20781 1.20744 1.21948 0.99126 0.96928 0.98792 1.21811 1.00432 0.92159 0.87242 0.91504 0.91434 0.92490 0.92062 0.91859 0.91082 0.91538 0.90365 0.90389 0.91001 0.88902 0.89674 0.91719 0.89621 0.95645 0.91019 0.83137 0.93981 0.89652 0.77479 0.91940 0.91417 0.90183 0.90118 0.90662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.98 9.53 37.16 0.35 -0.63 16 2 C 0.08 0.51 3.34 -26.73 -0.09 0.42 16 3 C -0.15 -0.87 9.56 37.16 0.36 -0.51 16 4 O -0.36 -3.61 9.52 -55.14 -0.52 -4.13 16 5 C 0.05 0.36 4.57 36.00 0.16 0.52 16 6 C 0.52 5.72 7.77 -10.99 -0.09 5.64 16 7 O -0.52 -8.19 15.91 -14.35 -0.23 -8.42 16 8 N -0.61 -5.54 2.97 -172.74 -0.51 -6.06 16 9 C 0.11 1.14 6.42 -3.71 -0.02 1.12 16 10 C -0.13 -1.33 5.18 -26.45 -0.14 -1.46 16 11 C -0.09 -0.79 2.36 -90.42 -0.21 -1.00 16 12 C 0.06 0.73 5.14 -3.82 -0.02 0.71 16 13 N -0.67 -10.44 6.12 -115.06 -0.70 -11.15 16 14 C 0.05 0.88 6.17 -4.98 -0.03 0.85 16 15 C 0.44 10.40 7.82 -10.99 -0.09 10.32 16 16 O -0.58 -15.84 15.78 5.55 0.09 -15.75 16 17 N -0.56 -14.32 5.29 -10.96 -0.06 -14.38 16 18 C -0.30 -8.37 9.68 -14.93 -0.14 -8.52 16 19 H 0.10 3.04 7.16 -52.49 -0.38 2.67 16 20 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 21 N -0.90 -24.55 13.05 55.50 0.72 -23.82 16 22 Si 0.93 21.08 29.55 -169.99 -5.02 16.06 16 23 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 24 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 25 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 26 C -0.13 -0.85 5.37 -26.59 -0.14 -1.00 16 27 C 0.11 0.63 6.34 -3.68 -0.02 0.61 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.30 7.87 -51.93 -0.41 -0.11 16 31 H 0.06 0.28 7.79 -51.93 -0.40 -0.12 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.08 0.41 7.88 -51.93 -0.41 0.00 16 36 H 0.08 0.44 7.42 -51.93 -0.39 0.05 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.09 1.08 7.00 -51.93 -0.36 0.72 16 39 H 0.08 0.94 6.63 -51.93 -0.34 0.60 16 40 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 42 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 43 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 44 H 0.35 5.65 6.66 -39.29 -0.26 5.39 16 45 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.09 1.37 8.14 -51.92 -0.42 0.95 16 47 H 0.39 9.50 7.90 -40.82 -0.32 9.17 16 48 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 49 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 50 H 0.08 0.43 8.14 -51.92 -0.42 0.00 16 51 H 0.08 0.29 5.93 -51.93 -0.31 -0.01 16 52 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 LS Contribution 416.96 15.07 6.28 6.28 Total: -1.00 -35.00 416.96 -9.24 -44.24 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: -9.06 Total: 9.58 kcal Atomic # 6 Polarization: 7.77 SS G_CDS: -0.22 Total: 7.55 kcal Atomic # 7 Polarization: -54.85 SS G_CDS: -0.55 Total: -55.40 kcal Atomic # 8 Polarization: -27.64 SS G_CDS: -0.67 Total: -28.31 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -35.00 -9.24 -44.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204686544.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.201 kcal (2) G-P(sol) polarization free energy of solvation -35.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds