Wall clock time and date at job start Wed Apr 1 2020 00:10:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47361 * 2 1 4 4 O 1.42900 * 109.47397 * 119.99648 * 2 1 3 5 5 C 1.42906 * 114.00046 * 89.99799 * 4 2 1 6 6 C 1.50698 * 109.47172 * 180.02562 * 5 4 2 7 7 O 1.21279 * 119.99808 * 0.02562 * 6 5 4 8 8 N 1.34778 * 120.00023 * 180.02562 * 6 5 4 9 9 C 1.46919 * 120.63255 * 179.97438 * 8 6 5 10 10 C 1.53195 * 108.89273 * 126.34238 * 9 8 6 11 11 C 1.53346 * 109.14901 * 54.57640 * 10 9 8 12 12 C 1.53004 * 109.41904 * 178.67276 * 11 10 9 13 13 N 1.46901 * 109.47273 * 295.13166 * 12 11 10 14 14 C 1.46892 * 110.99941 * 179.97438 * 13 12 11 15 15 C 1.50706 * 109.47168 * 179.97438 * 14 13 12 16 16 O 1.21290 * 119.99567 * 0.02562 * 15 14 13 17 17 N 1.34771 * 119.99829 * 180.02562 * 15 14 13 18 18 C 1.37098 * 119.99609 * 180.02562 * 17 15 14 19 19 H 1.07998 * 120.00503 * 359.97438 * 18 17 15 20 20 C 1.38955 * 119.99818 * 180.02562 * 18 17 15 21 21 N 1.31407 * 120.00022 * 359.97438 * 20 18 17 22 22 Si 1.86807 * 119.99819 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47167 * 0.02562 * 22 20 18 24 24 H 1.48506 * 109.46951 * 119.99733 * 22 20 18 25 25 H 1.48489 * 109.47080 * 239.99736 * 22 20 18 26 26 C 1.53034 * 109.61010 * 298.71225 * 11 10 9 27 27 C 1.46933 * 120.62741 * 0.02562 * 8 6 5 28 28 H 1.09001 * 109.47338 * 300.00313 * 1 2 3 29 29 H 1.09002 * 109.46934 * 60.00130 * 1 2 3 30 30 H 1.08996 * 109.47301 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47338 * 239.99687 * 2 1 3 32 32 H 1.08996 * 109.47436 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.46990 * 299.99835 * 3 2 1 34 34 H 1.09001 * 109.47150 * 59.99572 * 3 2 1 35 35 H 1.09001 * 109.46424 * 60.00320 * 5 4 2 36 36 H 1.09001 * 109.47169 * 300.00611 * 5 4 2 37 37 H 1.09002 * 109.58751 * 246.20189 * 9 8 6 38 38 H 1.08996 * 109.58750 * 6.48373 * 9 8 6 39 39 H 1.08997 * 109.49914 * 174.65962 * 10 9 8 40 40 H 1.09002 * 109.49585 * 294.75599 * 10 9 8 41 41 H 1.09001 * 109.42242 * 58.75065 * 11 10 9 42 42 H 1.09001 * 109.46592 * 55.13132 * 12 11 10 43 43 H 1.08997 * 109.47133 * 175.12697 * 12 11 10 44 44 H 1.00898 * 110.99851 * 56.04100 * 13 12 11 45 45 H 1.08997 * 109.47620 * 299.99656 * 14 13 12 46 46 H 1.09009 * 109.47147 * 60.00030 * 14 13 12 47 47 H 0.96994 * 120.00922 * 0.02562 * 17 15 14 48 48 H 0.97007 * 119.99968 * 179.97438 * 21 20 18 49 49 H 1.08994 * 109.50232 * 301.42239 * 26 11 10 50 50 H 1.09007 * 109.52628 * 181.33900 * 26 11 10 51 51 H 1.08994 * 109.58580 * 353.38021 * 27 8 6 52 52 H 1.09006 * 109.57831 * 113.65514 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.2001 -2.0782 0.9887 6 6 2.7003 -2.6833 2.2750 7 8 2.8734 -1.9810 3.2485 8 7 2.9554 -4.0050 2.3436 9 6 3.4440 -4.6094 3.5903 10 6 2.5280 -5.7781 3.9673 11 6 2.4416 -6.7511 2.7852 12 6 1.5544 -7.9377 3.1669 13 7 2.1906 -8.6956 4.2527 14 6 1.3649 -9.8448 4.6466 15 6 2.0485 -10.5966 5.7596 16 8 3.1182 -10.2125 6.1831 17 7 1.4713 -11.6957 6.2841 18 6 2.0930 -12.3793 7.2969 19 1 3.0455 -12.0374 7.6741 20 6 1.4982 -13.5129 7.8373 21 7 0.3395 -13.9293 7.3780 22 14 2.3457 -14.4448 9.2168 23 1 3.6287 -13.7758 9.5509 24 1 1.4691 -14.4598 10.4155 25 1 2.6125 -15.8390 8.7813 26 6 1.8415 -6.0349 1.5733 27 6 2.7511 -4.8685 1.1725 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9564 0.8899 35 1 2.9320 -2.2466 0.1987 36 1 1.2538 -2.5434 0.7126 37 1 4.4609 -4.9742 3.4456 38 1 3.4328 -3.8649 4.3863 39 1 2.9346 -6.2929 4.8377 40 1 1.5326 -5.3997 4.1999 41 1 3.4406 -7.1096 2.5372 42 1 0.5827 -7.5726 3.4995 43 1 1.4219 -8.5858 2.3006 44 1 2.3830 -8.1005 5.0445 45 1 0.3921 -9.4927 4.9897 46 1 1.2307 -10.5063 3.7907 47 1 0.6161 -12.0032 5.9451 48 1 -0.0755 -14.7208 7.7551 49 1 0.8526 -5.6543 1.8284 50 1 1.7587 -6.7340 0.7410 51 1 2.2803 -4.2955 0.3737 52 1 3.7120 -5.2522 0.8295 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001204686544.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:10:46 Heat of formation + Delta-G solvation = -152.550511 kcal Electronic energy + Delta-G solvation = -29364.221528 eV Core-core repulsion = 25169.218271 eV Total energy + Delta-G solvation = -4195.003256 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.35457 -40.18703 -39.42552 -38.59570 -36.73256 -35.87331 -34.00243 -33.63375 -33.22216 -32.25309 -29.73618 -28.59264 -28.01920 -27.11124 -25.53611 -24.18853 -23.36209 -22.26213 -21.52105 -21.07023 -20.07904 -19.89412 -18.39154 -17.88622 -17.78343 -17.15552 -17.02397 -16.73989 -16.43169 -16.00475 -15.76831 -15.57054 -15.49592 -15.29301 -15.14349 -14.70401 -14.57466 -14.33727 -14.14380 -13.86355 -13.79202 -13.50268 -13.46922 -13.20833 -13.12071 -13.05657 -12.91259 -12.86700 -12.65368 -12.41281 -12.36187 -12.19770 -12.12111 -11.84156 -11.64155 -11.53909 -11.51825 -11.31207 -10.78139 -10.64288 -10.34558 -10.01873 -9.71428 -9.30330 -8.47410 -5.96071 1.36246 1.41707 1.51000 1.55850 1.69898 2.04865 2.28972 2.84195 2.94850 3.20025 3.49346 3.54321 3.81343 3.82286 3.88345 4.00854 4.08550 4.13855 4.14863 4.27263 4.30637 4.31418 4.33341 4.40803 4.47069 4.56359 4.59699 4.64309 4.72932 4.75100 4.80152 4.85234 4.90363 4.91533 4.94546 4.95959 5.01506 5.08666 5.19763 5.29593 5.33353 5.40708 5.48925 5.52161 5.90650 6.12875 6.15328 6.38568 6.42116 6.59787 7.10625 7.12317 7.55903 8.11320 8.70189 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.033540 B = 0.001494 C = 0.001473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.619926 B =18731.824199 C =19006.284326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.073 3.927 3 C -0.151 4.151 4 O -0.397 6.397 5 C 0.048 3.952 6 C 0.506 3.494 7 O -0.581 6.581 8 N -0.606 5.606 9 C 0.115 3.885 10 C -0.126 4.126 11 C -0.079 4.079 12 C 0.066 3.934 13 N -0.684 5.684 14 C 0.065 3.935 15 C 0.436 3.564 16 O -0.624 6.624 17 N -0.573 5.573 18 C -0.335 4.335 19 H 0.078 0.922 20 C -0.012 4.012 21 N -0.920 5.920 22 Si 0.992 3.008 23 H -0.274 1.274 24 H -0.271 1.271 25 H -0.270 1.270 26 C -0.122 4.122 27 C 0.102 3.898 28 H 0.047 0.953 29 H 0.086 0.914 30 H 0.061 0.939 31 H 0.087 0.913 32 H 0.056 0.944 33 H 0.093 0.907 34 H 0.048 0.952 35 H 0.111 0.889 36 H 0.106 0.894 37 H 0.078 0.922 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.057 0.943 41 H 0.079 0.921 42 H 0.032 0.968 43 H 0.086 0.914 44 H 0.341 0.659 45 H 0.063 0.937 46 H 0.106 0.894 47 H 0.397 0.603 48 H 0.278 0.722 49 H 0.068 0.932 50 H 0.104 0.896 51 H 0.114 0.886 52 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.330 23.187 -23.520 33.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.016 3.984 3 C -0.208 4.208 4 O -0.316 6.316 5 C -0.031 4.031 6 C 0.295 3.705 7 O -0.461 6.461 8 N -0.340 5.340 9 C -0.008 4.008 10 C -0.165 4.165 11 C -0.098 4.098 12 C -0.063 4.063 13 N -0.317 5.317 14 C -0.068 4.068 15 C 0.224 3.776 16 O -0.510 6.510 17 N -0.210 5.210 18 C -0.464 4.464 19 H 0.096 0.904 20 C -0.211 4.211 21 N -0.561 5.561 22 Si 0.816 3.184 23 H -0.199 1.199 24 H -0.196 1.196 25 H -0.195 1.195 26 C -0.161 4.161 27 C -0.020 4.020 28 H 0.066 0.934 29 H 0.105 0.895 30 H 0.080 0.920 31 H 0.105 0.895 32 H 0.075 0.925 33 H 0.112 0.888 34 H 0.068 0.932 35 H 0.128 0.872 36 H 0.123 0.877 37 H 0.096 0.904 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.076 0.924 41 H 0.098 0.902 42 H 0.051 0.949 43 H 0.104 0.896 44 H 0.160 0.840 45 H 0.081 0.919 46 H 0.124 0.876 47 H 0.230 0.770 48 H 0.087 0.913 49 H 0.086 0.914 50 H 0.122 0.878 51 H 0.132 0.868 52 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.228 23.381 -22.937 32.777 hybrid contribution -0.836 -0.531 1.454 1.759 sum -2.063 22.850 -21.483 31.431 Atomic orbital electron populations 1.22312 0.95221 1.02790 1.02907 1.22413 0.94316 0.94103 0.87590 1.21899 1.01590 0.94338 1.03000 1.88048 1.87077 1.18964 1.37529 1.22411 1.03000 0.83335 0.94333 1.21006 0.77124 0.82026 0.90385 1.90701 1.53903 1.61517 1.39957 1.48196 1.65284 1.06672 1.13855 1.21492 0.97739 0.95010 0.86521 1.21970 0.99702 0.95769 0.99008 1.21163 1.00343 0.93335 0.94998 1.22106 0.95182 0.94592 0.94388 1.60160 1.46979 1.10879 1.13670 1.21535 0.94484 0.94153 0.96602 1.20943 0.87027 0.83061 0.86603 1.90489 1.24908 1.70047 1.65598 1.41936 1.21714 1.24375 1.33019 1.19710 1.05317 1.08275 1.13142 0.90398 1.26022 0.96590 0.97542 1.00982 1.69674 1.16932 1.25776 1.43694 0.84881 0.78073 0.77901 0.77541 1.19867 1.19622 1.19508 1.21924 0.98879 0.97266 0.98015 1.22125 1.01444 0.91817 0.86566 0.93393 0.89522 0.91980 0.89501 0.92470 0.88782 0.93244 0.87184 0.87679 0.90415 0.91450 0.91404 0.92405 0.90229 0.94941 0.89567 0.83971 0.91944 0.87571 0.76953 0.91289 0.91375 0.87775 0.86837 0.89334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.62 9.53 71.98 0.69 -0.94 16 2 C 0.07 0.80 3.34 30.59 0.10 0.90 16 3 C -0.15 -1.61 9.56 71.98 0.69 -0.92 16 4 O -0.40 -7.64 9.52 -129.94 -1.24 -8.88 16 5 C 0.05 0.63 4.57 71.24 0.33 0.96 16 6 C 0.51 10.99 7.77 87.66 0.68 11.67 16 7 O -0.58 -19.27 15.91 16.01 0.25 -19.02 16 8 N -0.61 -10.26 2.97 -818.81 -2.43 -12.70 16 9 C 0.11 2.36 6.42 86.36 0.55 2.92 16 10 C -0.13 -2.53 5.18 30.78 0.16 -2.37 16 11 C -0.08 -1.32 2.36 -10.66 -0.03 -1.35 16 12 C 0.07 1.34 5.14 86.30 0.44 1.78 16 13 N -0.68 -20.71 6.12 -517.93 -3.17 -23.89 16 14 C 0.06 2.18 6.17 85.56 0.53 2.71 16 15 C 0.44 20.82 7.82 87.66 0.69 21.51 16 16 O -0.62 -34.85 15.78 -3.06 -0.05 -34.90 16 17 N -0.57 -29.52 5.29 -306.98 -1.62 -31.14 16 18 C -0.33 -19.16 9.68 84.04 0.81 -18.35 16 19 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 20 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16 21 N -0.92 -49.59 13.05 21.66 0.28 -49.31 16 22 Si 0.99 43.10 29.55 68.60 2.03 45.13 16 23 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 24 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 25 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 26 C -0.12 -1.18 5.37 30.69 0.16 -1.02 16 27 C 0.10 0.84 6.34 86.38 0.55 1.39 16 28 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.06 0.50 7.87 -2.39 -0.02 0.48 16 31 H 0.09 0.50 7.79 -2.39 -0.02 0.48 16 32 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.11 0.72 7.88 -2.39 -0.02 0.70 16 36 H 0.11 0.79 7.42 -2.39 -0.02 0.77 16 37 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.07 1.73 7.00 -2.39 -0.02 1.71 16 39 H 0.07 1.59 6.63 -2.39 -0.02 1.57 16 40 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 42 H 0.03 0.63 8.14 -2.39 -0.02 0.62 16 43 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 44 H 0.34 11.17 6.66 -89.70 -0.60 10.58 16 45 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 46 H 0.11 3.16 8.14 -2.38 -0.02 3.15 16 47 H 0.40 19.30 7.90 -92.71 -0.73 18.57 16 48 H 0.28 13.96 8.31 -92.70 -0.77 13.19 16 49 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 50 H 0.10 0.60 8.14 -2.38 -0.02 0.58 16 51 H 0.11 0.25 5.93 -2.39 -0.01 0.24 16 52 H 0.09 0.58 8.14 -2.38 -0.02 0.56 16 Total: -1.00 -79.89 416.96 0.46 -79.43 By element: Atomic # 1 Polarization: 36.94 SS G_CDS: -0.41 Total: 36.53 kcal Atomic # 6 Polarization: 11.92 SS G_CDS: 6.82 Total: 18.74 kcal Atomic # 7 Polarization: -110.09 SS G_CDS: -6.95 Total: -117.04 kcal Atomic # 8 Polarization: -61.77 SS G_CDS: -1.03 Total: -62.80 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Total: -79.89 0.46 -79.43 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204686544.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.119 kcal (2) G-P(sol) polarization free energy of solvation -79.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds