Wall clock time and date at job start Wed Apr 1 2020 00:10:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47053 * 2 1 4 4 O 1.42900 * 109.46834 * 179.97438 * 3 2 1 5 5 C 1.42906 * 114.00046 * 180.02562 * 4 3 2 6 6 C 1.50698 * 109.47172 * 180.02562 * 5 4 3 7 7 O 1.21279 * 119.99808 * 0.02562 * 6 5 4 8 8 N 1.34778 * 120.00023 * 180.02562 * 6 5 4 9 9 C 1.46919 * 120.63255 * 179.97438 * 8 6 5 10 10 C 1.53195 * 108.89273 * 126.34238 * 9 8 6 11 11 C 1.53346 * 109.14901 * 54.57640 * 10 9 8 12 12 C 1.53004 * 109.41904 * 178.67276 * 11 10 9 13 13 N 1.46901 * 109.47273 * 295.13166 * 12 11 10 14 14 C 1.46892 * 110.99941 * 179.97438 * 13 12 11 15 15 C 1.50706 * 109.47168 * 179.97438 * 14 13 12 16 16 O 1.21290 * 119.99567 * 0.02562 * 15 14 13 17 17 N 1.34771 * 119.99829 * 180.02562 * 15 14 13 18 18 C 1.37098 * 119.99609 * 180.02562 * 17 15 14 19 19 H 1.07998 * 120.00503 * 359.97438 * 18 17 15 20 20 C 1.38955 * 119.99818 * 180.02562 * 18 17 15 21 21 N 1.31415 * 120.00034 * 179.97438 * 20 18 17 22 22 Si 1.86797 * 120.00238 * 359.97438 * 20 18 17 23 23 H 1.48503 * 109.47105 * 89.99838 * 22 20 18 24 24 H 1.48498 * 109.47239 * 210.00338 * 22 20 18 25 25 H 1.48502 * 109.46928 * 330.00024 * 22 20 18 26 26 C 1.53034 * 109.61010 * 298.71225 * 11 10 9 27 27 C 1.46933 * 120.62741 * 0.02562 * 8 6 5 28 28 H 1.09002 * 109.46738 * 59.99729 * 1 2 3 29 29 H 1.08995 * 109.47174 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47360 * 300.00064 * 1 2 3 31 31 H 1.08997 * 109.47195 * 240.00417 * 2 1 3 32 32 H 1.08999 * 109.47247 * 120.00261 * 2 1 3 33 33 H 1.09005 * 109.46901 * 60.00506 * 3 2 1 34 34 H 1.08992 * 109.47059 * 299.99943 * 3 2 1 35 35 H 1.09001 * 109.46424 * 60.00320 * 5 4 3 36 36 H 1.09001 * 109.47169 * 300.00611 * 5 4 3 37 37 H 1.09002 * 109.58751 * 246.20189 * 9 8 6 38 38 H 1.08996 * 109.58750 * 6.48373 * 9 8 6 39 39 H 1.08997 * 109.49914 * 174.65962 * 10 9 8 40 40 H 1.09002 * 109.49585 * 294.75599 * 10 9 8 41 41 H 1.09001 * 109.42242 * 58.75065 * 11 10 9 42 42 H 1.09001 * 109.46592 * 55.13132 * 12 11 10 43 43 H 1.08997 * 109.47133 * 175.12697 * 12 11 10 44 44 H 1.00898 * 110.99851 * 56.04100 * 13 12 11 45 45 H 1.08997 * 109.47620 * 299.99656 * 14 13 12 46 46 H 1.09009 * 109.47147 * 60.00030 * 14 13 12 47 47 H 0.96994 * 120.00922 * 0.02562 * 17 15 14 48 48 H 0.96995 * 120.00260 * 179.97438 * 21 20 18 49 49 H 1.08994 * 109.50232 * 301.42239 * 26 11 10 50 50 H 1.09007 * 109.52628 * 181.33900 * 26 11 10 51 51 H 1.08994 * 109.58580 * 353.38021 * 27 8 6 52 52 H 1.09006 * 109.57831 * 113.65514 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4425 0.0006 5 6 4.0503 2.7480 0.0012 6 6 5.5526 2.6289 0.0012 7 8 6.0741 1.5340 0.0002 8 7 6.3166 3.7393 0.0023 9 6 7.7824 3.6394 0.0028 10 6 8.3361 4.4634 -1.1639 11 6 7.8008 5.8970 -1.0659 12 6 8.3765 6.7343 -2.2099 13 7 9.8323 6.8477 -2.0492 14 6 10.4208 7.6463 -3.1325 15 6 11.9118 7.7409 -2.9339 16 8 12.4327 7.1962 -1.9837 17 7 12.6661 8.4309 -3.8122 18 6 14.0224 8.5165 -3.6318 19 1 14.4864 8.0314 -2.7857 20 6 14.8001 9.2282 -4.5370 21 7 16.1002 9.3107 -4.3639 22 14 13.9977 10.0678 -6.0001 23 1 13.6098 11.4514 -5.6253 24 1 14.9569 10.1122 -7.1328 25 1 12.7883 9.3072 -6.4052 26 6 6.2736 5.8828 -1.1631 27 6 5.6993 5.0726 0.0040 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.6767 1.9563 0.8901 34 1 1.6767 1.9563 -0.8899 35 1 3.7283 3.2885 0.8913 36 1 3.7290 3.2892 -0.8887 37 1 8.1747 4.0273 0.9429 38 1 8.0776 2.5966 -0.1137 39 1 9.4251 4.4740 -1.1172 40 1 8.0163 4.0197 -2.1068 41 1 8.0999 6.3312 -0.1120 42 1 8.1525 6.2521 -3.1614 43 1 7.9305 7.7286 -2.1925 44 1 10.2624 5.9364 -1.9973 45 1 10.2111 7.1702 -4.0902 46 1 9.9890 8.6472 -3.1219 47 1 12.2495 8.8668 -4.5719 48 1 16.6431 9.8073 -4.9959 49 1 5.9732 5.4259 -2.1060 50 1 5.8961 6.9043 -1.1172 51 1 4.6201 4.9758 -0.1141 52 1 5.9201 5.5761 0.9453 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001204698302.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:10:51 Heat of formation + Delta-G solvation = -122.768250 kcal Electronic energy + Delta-G solvation = -29110.480057 eV Core-core repulsion = 24916.768257 eV Total energy + Delta-G solvation = -4193.711800 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.61363 -38.82467 -38.38508 -37.67947 -35.67296 -34.17081 -33.97988 -32.90725 -31.67488 -31.65358 -29.13670 -27.92479 -26.20536 -25.72862 -23.95901 -23.38974 -22.48508 -22.04159 -20.74716 -19.45173 -19.29514 -18.36276 -17.79304 -17.02147 -16.87080 -16.29788 -16.07239 -15.72815 -15.56968 -14.94559 -14.85440 -14.68107 -14.58681 -14.45824 -14.14410 -13.74305 -13.62562 -13.47631 -13.21306 -13.10823 -12.66262 -12.60198 -12.56428 -12.51629 -12.42163 -12.11459 -11.90912 -11.72159 -11.58858 -11.41661 -11.37650 -11.18391 -11.05625 -10.83083 -10.60270 -10.57938 -10.18417 -9.99229 -9.97519 -9.57835 -8.99400 -8.59409 -8.20166 -8.14793 -6.31512 -3.82983 2.26675 2.32275 3.01584 3.06073 3.14295 3.33282 3.73520 4.00630 4.09567 4.10926 4.35809 4.43742 4.49561 4.54609 4.57045 4.63022 4.69360 4.75995 4.80401 4.86846 4.93544 4.97174 4.98932 5.02342 5.19548 5.21384 5.21947 5.32587 5.40987 5.41677 5.50665 5.56296 5.61389 5.62860 5.67027 5.71721 5.72976 5.80829 5.81866 5.87968 5.93101 6.17854 6.21414 6.59360 7.02398 7.08650 7.55837 7.58149 7.85052 8.14212 8.59385 8.94608 9.42042 9.82285 10.81659 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.031827 B = 0.001471 C = 0.001451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.558533 B =19024.240473 C =19289.368971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C 0.060 3.940 4 O -0.365 6.365 5 C 0.046 3.954 6 C 0.515 3.485 7 O -0.520 6.520 8 N -0.611 5.611 9 C 0.114 3.886 10 C -0.133 4.133 11 C -0.086 4.086 12 C 0.064 3.936 13 N -0.669 5.669 14 C 0.048 3.952 15 C 0.449 3.551 16 O -0.565 6.565 17 N -0.591 5.591 18 C -0.306 4.306 19 H 0.120 0.880 20 C 0.042 3.958 21 N -0.881 5.881 22 Si 0.880 3.120 23 H -0.271 1.271 24 H -0.277 1.277 25 H -0.270 1.270 26 C -0.129 4.129 27 C 0.106 3.894 28 H 0.056 0.944 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.050 0.950 34 H 0.050 0.950 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.093 0.907 39 H 0.085 0.915 40 H 0.064 0.936 41 H 0.086 0.914 42 H 0.026 0.974 43 H 0.072 0.928 44 H 0.350 0.650 45 H 0.043 0.957 46 H 0.087 0.913 47 H 0.370 0.630 48 H 0.273 0.727 49 H 0.067 0.933 50 H 0.080 0.920 51 H 0.081 0.919 52 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.288 -9.504 6.050 35.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C -0.017 4.017 4 O -0.283 6.283 5 C -0.033 4.033 6 C 0.302 3.698 7 O -0.394 6.394 8 N -0.347 5.347 9 C -0.008 4.008 10 C -0.171 4.171 11 C -0.105 4.105 12 C -0.065 4.065 13 N -0.302 5.302 14 C -0.085 4.085 15 C 0.235 3.765 16 O -0.446 6.446 17 N -0.230 5.230 18 C -0.434 4.434 19 H 0.137 0.863 20 C -0.161 4.161 21 N -0.521 5.521 22 Si 0.706 3.294 23 H -0.196 1.196 24 H -0.202 1.202 25 H -0.196 1.196 26 C -0.168 4.168 27 C -0.017 4.017 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.091 0.909 38 H 0.111 0.889 39 H 0.104 0.896 40 H 0.083 0.917 41 H 0.104 0.896 42 H 0.044 0.956 43 H 0.090 0.910 44 H 0.170 0.830 45 H 0.061 0.939 46 H 0.105 0.895 47 H 0.203 0.797 48 H 0.084 0.916 49 H 0.086 0.914 50 H 0.098 0.902 51 H 0.099 0.901 52 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -32.357 -10.053 7.059 34.610 hybrid contribution -0.679 0.650 -2.103 2.304 sum -33.036 -9.402 4.956 34.703 Atomic orbital electron populations 1.21698 0.94591 1.02406 1.01995 1.21454 0.95648 0.95322 1.03748 1.22650 0.80371 0.98424 1.00252 1.88016 1.19656 1.25235 1.95412 1.22228 0.91822 0.86926 1.02365 1.20210 0.88609 0.84241 0.76752 1.90735 1.74409 1.26144 1.48153 1.48084 1.07157 1.05630 1.73816 1.21631 0.77990 1.02321 0.98857 1.22074 1.01622 0.94933 0.98504 1.21206 0.93718 0.95127 1.00429 1.21991 0.88903 0.99553 0.96082 1.60112 1.02416 1.21809 1.45902 1.21703 0.94743 0.99326 0.92744 1.19719 0.87572 0.84098 0.85095 1.90564 1.73606 1.49094 1.31372 1.42205 1.08272 1.48118 1.24420 1.19442 0.79993 1.31758 1.12248 0.86270 1.25036 0.95339 0.97633 0.98101 1.69621 1.04088 1.41298 1.37121 0.86670 0.79378 0.80410 0.82903 1.19597 1.20185 1.19566 1.21947 0.95937 1.00489 0.98414 1.21812 0.97446 0.82771 0.99629 0.92504 0.91884 0.92505 0.90923 0.90927 0.93135 0.93127 0.90319 0.90313 0.90947 0.88861 0.89645 0.91714 0.89550 0.95600 0.90983 0.82955 0.93865 0.89515 0.79703 0.91611 0.91420 0.90187 0.90086 0.90629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.60 9.91 37.16 0.37 -0.23 16 2 C -0.12 -0.74 6.30 -26.73 -0.17 -0.91 16 3 C 0.06 0.38 5.94 37.16 0.22 0.60 16 4 O -0.36 -3.67 9.88 -55.14 -0.54 -4.21 16 5 C 0.05 0.35 4.76 36.00 0.17 0.52 16 6 C 0.52 5.61 7.77 -10.99 -0.09 5.53 16 7 O -0.52 -8.11 15.91 -14.35 -0.23 -8.33 16 8 N -0.61 -5.37 2.97 -172.74 -0.51 -5.88 16 9 C 0.11 1.10 6.42 -3.71 -0.02 1.08 16 10 C -0.13 -1.27 5.18 -26.45 -0.14 -1.41 16 11 C -0.09 -0.75 2.36 -90.42 -0.21 -0.96 16 12 C 0.06 0.67 5.14 -3.82 -0.02 0.65 16 13 N -0.67 -9.86 6.12 -115.06 -0.70 -10.57 16 14 C 0.05 0.77 6.17 -4.98 -0.03 0.74 16 15 C 0.45 10.15 7.82 -10.99 -0.09 10.06 16 16 O -0.56 -15.10 15.78 5.55 0.09 -15.02 16 17 N -0.59 -14.03 5.09 -10.96 -0.06 -14.09 16 18 C -0.31 -8.66 10.16 -14.93 -0.15 -8.81 16 19 H 0.12 3.86 7.39 -52.49 -0.39 3.47 16 20 C 0.04 1.15 5.50 -17.46 -0.10 1.05 16 21 N -0.88 -25.75 13.96 55.50 0.77 -24.98 16 22 Si 0.88 19.29 27.74 -169.99 -4.71 14.58 16 23 H -0.27 -5.81 7.11 56.52 0.40 -5.40 16 24 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 25 H -0.27 -5.39 6.52 56.52 0.37 -5.02 16 26 C -0.13 -0.79 5.37 -26.59 -0.14 -0.93 16 27 C 0.11 0.59 6.34 -3.68 -0.02 0.57 16 28 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.06 0.20 8.14 -51.93 -0.42 -0.23 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.05 0.25 8.14 -51.93 -0.42 -0.18 16 34 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.08 0.39 7.94 -51.93 -0.41 -0.02 16 36 H 0.08 0.41 7.69 -51.93 -0.40 0.01 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.09 1.07 7.00 -51.93 -0.36 0.70 16 39 H 0.09 0.91 6.63 -51.93 -0.34 0.56 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 43 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.35 5.40 6.66 -39.29 -0.26 5.14 16 45 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.09 1.25 8.14 -51.92 -0.42 0.83 16 47 H 0.37 7.69 5.76 -40.82 -0.24 7.46 16 48 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 49 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 50 H 0.08 0.39 8.14 -51.92 -0.42 -0.04 16 51 H 0.08 0.27 5.93 -51.93 -0.31 -0.04 16 52 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 415.07 15.07 6.26 6.26 Total: -1.00 -36.30 415.07 -9.13 -45.43 By element: Atomic # 1 Polarization: 18.34 SS G_CDS: -9.07 Total: 9.27 kcal Atomic # 6 Polarization: 7.96 SS G_CDS: -0.42 Total: 7.55 kcal Atomic # 7 Polarization: -55.02 SS G_CDS: -0.50 Total: -55.51 kcal Atomic # 8 Polarization: -26.88 SS G_CDS: -0.69 Total: -27.56 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -4.71 Total: 14.58 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -36.30 -9.13 -45.43 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204698302.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.340 kcal (2) G-P(sol) polarization free energy of solvation -36.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds