Wall clock time and date at job start Wed Apr 1 2020 00:10:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47053 * 2 1 4 4 O 1.42900 * 109.46834 * 179.97438 * 3 2 1 5 5 C 1.42906 * 114.00046 * 180.02562 * 4 3 2 6 6 C 1.50698 * 109.47172 * 180.02562 * 5 4 3 7 7 O 1.21279 * 119.99808 * 0.02562 * 6 5 4 8 8 N 1.34778 * 120.00023 * 180.02562 * 6 5 4 9 9 C 1.46919 * 120.63255 * 179.97438 * 8 6 5 10 10 C 1.53195 * 108.89273 * 126.34238 * 9 8 6 11 11 C 1.53346 * 109.14901 * 54.57640 * 10 9 8 12 12 C 1.53004 * 109.41904 * 178.67276 * 11 10 9 13 13 N 1.46901 * 109.47273 * 295.13166 * 12 11 10 14 14 C 1.46892 * 110.99941 * 179.97438 * 13 12 11 15 15 C 1.50706 * 109.47168 * 179.97438 * 14 13 12 16 16 O 1.21290 * 119.99567 * 0.02562 * 15 14 13 17 17 N 1.34771 * 119.99829 * 180.02562 * 15 14 13 18 18 C 1.37098 * 119.99609 * 180.02562 * 17 15 14 19 19 H 1.07998 * 120.00503 * 359.97438 * 18 17 15 20 20 C 1.38955 * 119.99818 * 180.02562 * 18 17 15 21 21 N 1.31415 * 120.00034 * 179.97438 * 20 18 17 22 22 Si 1.86797 * 120.00238 * 359.97438 * 20 18 17 23 23 H 1.48503 * 109.47105 * 89.99838 * 22 20 18 24 24 H 1.48498 * 109.47239 * 210.00338 * 22 20 18 25 25 H 1.48502 * 109.46928 * 330.00024 * 22 20 18 26 26 C 1.53034 * 109.61010 * 298.71225 * 11 10 9 27 27 C 1.46933 * 120.62741 * 0.02562 * 8 6 5 28 28 H 1.09002 * 109.46738 * 59.99729 * 1 2 3 29 29 H 1.08995 * 109.47174 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47360 * 300.00064 * 1 2 3 31 31 H 1.08997 * 109.47195 * 240.00417 * 2 1 3 32 32 H 1.08999 * 109.47247 * 120.00261 * 2 1 3 33 33 H 1.09005 * 109.46901 * 60.00506 * 3 2 1 34 34 H 1.08992 * 109.47059 * 299.99943 * 3 2 1 35 35 H 1.09001 * 109.46424 * 60.00320 * 5 4 3 36 36 H 1.09001 * 109.47169 * 300.00611 * 5 4 3 37 37 H 1.09002 * 109.58751 * 246.20189 * 9 8 6 38 38 H 1.08996 * 109.58750 * 6.48373 * 9 8 6 39 39 H 1.08997 * 109.49914 * 174.65962 * 10 9 8 40 40 H 1.09002 * 109.49585 * 294.75599 * 10 9 8 41 41 H 1.09001 * 109.42242 * 58.75065 * 11 10 9 42 42 H 1.09001 * 109.46592 * 55.13132 * 12 11 10 43 43 H 1.08997 * 109.47133 * 175.12697 * 12 11 10 44 44 H 1.00898 * 110.99851 * 56.04100 * 13 12 11 45 45 H 1.08997 * 109.47620 * 299.99656 * 14 13 12 46 46 H 1.09009 * 109.47147 * 60.00030 * 14 13 12 47 47 H 0.96994 * 120.00922 * 0.02562 * 17 15 14 48 48 H 0.96995 * 120.00260 * 179.97438 * 21 20 18 49 49 H 1.08994 * 109.50232 * 301.42239 * 26 11 10 50 50 H 1.09007 * 109.52628 * 181.33900 * 26 11 10 51 51 H 1.08994 * 109.58580 * 353.38021 * 27 8 6 52 52 H 1.09006 * 109.57831 * 113.65514 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4425 0.0006 5 6 4.0503 2.7480 0.0012 6 6 5.5526 2.6289 0.0012 7 8 6.0741 1.5340 0.0002 8 7 6.3166 3.7393 0.0023 9 6 7.7824 3.6394 0.0028 10 6 8.3361 4.4634 -1.1639 11 6 7.8008 5.8970 -1.0659 12 6 8.3765 6.7343 -2.2099 13 7 9.8323 6.8477 -2.0492 14 6 10.4208 7.6463 -3.1325 15 6 11.9118 7.7409 -2.9339 16 8 12.4327 7.1962 -1.9837 17 7 12.6661 8.4309 -3.8122 18 6 14.0224 8.5165 -3.6318 19 1 14.4864 8.0314 -2.7857 20 6 14.8001 9.2282 -4.5370 21 7 16.1002 9.3107 -4.3639 22 14 13.9977 10.0678 -6.0001 23 1 13.6098 11.4514 -5.6253 24 1 14.9569 10.1122 -7.1328 25 1 12.7883 9.3072 -6.4052 26 6 6.2736 5.8828 -1.1631 27 6 5.6993 5.0726 0.0040 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.6767 1.9563 0.8901 34 1 1.6767 1.9563 -0.8899 35 1 3.7283 3.2885 0.8913 36 1 3.7290 3.2892 -0.8887 37 1 8.1747 4.0273 0.9429 38 1 8.0776 2.5966 -0.1137 39 1 9.4251 4.4740 -1.1172 40 1 8.0163 4.0197 -2.1068 41 1 8.0999 6.3312 -0.1120 42 1 8.1525 6.2521 -3.1614 43 1 7.9305 7.7286 -2.1925 44 1 10.2624 5.9364 -1.9973 45 1 10.2111 7.1702 -4.0902 46 1 9.9890 8.6472 -3.1219 47 1 12.2495 8.8668 -4.5719 48 1 16.6431 9.8073 -4.9959 49 1 5.9732 5.4259 -2.1060 50 1 5.8961 6.9043 -1.1172 51 1 4.6201 4.9758 -0.1141 52 1 5.9201 5.5761 0.9453 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001204698302.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:10:50 Heat of formation + Delta-G solvation = -150.347392 kcal Electronic energy + Delta-G solvation = -29111.675978 eV Core-core repulsion = 24916.768257 eV Total energy + Delta-G solvation = -4194.907722 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.34951 -40.31822 -39.31032 -38.47492 -36.74804 -35.91377 -34.61513 -33.93120 -33.66913 -32.31301 -29.93552 -28.89537 -27.25203 -26.47770 -25.37684 -24.13293 -23.33915 -22.47570 -21.49816 -21.26261 -20.30111 -19.99211 -18.48276 -17.82087 -17.57053 -17.49078 -17.12488 -16.78458 -16.63374 -16.25784 -15.82371 -15.57547 -15.41267 -15.25333 -15.13181 -14.90555 -14.61804 -14.48467 -14.41523 -14.11539 -14.03824 -13.75812 -13.24336 -13.18701 -13.06347 -13.02555 -12.91665 -12.87238 -12.64235 -12.41468 -12.19846 -11.98902 -11.85070 -11.81376 -11.79487 -11.53379 -11.51410 -11.30584 -10.79227 -10.68724 -10.43218 -10.24940 -9.72040 -9.29603 -8.41411 -6.02613 1.30166 1.35967 1.44826 1.50107 1.68468 1.95832 2.23229 2.74649 2.82280 3.14954 3.42878 3.49993 3.81919 3.82854 3.88432 4.03223 4.07298 4.13536 4.17615 4.20108 4.24320 4.31950 4.40420 4.42006 4.44103 4.53149 4.56781 4.60303 4.65035 4.65857 4.73063 4.83975 4.84351 4.90775 4.96283 5.02383 5.09221 5.16582 5.19729 5.22939 5.35276 5.48662 5.51768 5.53969 5.91471 6.08728 6.09312 6.36748 6.40806 6.59860 6.88009 7.09658 7.39766 7.96652 8.76370 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.031827 B = 0.001471 C = 0.001451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.558533 B =19024.240473 C =19289.368971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.127 4.127 3 C 0.056 3.944 4 O -0.405 6.405 5 C 0.049 3.951 6 C 0.505 3.495 7 O -0.582 6.582 8 N -0.605 5.605 9 C 0.114 3.886 10 C -0.126 4.126 11 C -0.081 4.081 12 C 0.067 3.933 13 N -0.689 5.689 14 C 0.062 3.938 15 C 0.446 3.554 16 O -0.615 6.615 17 N -0.591 5.591 18 C -0.331 4.331 19 H 0.054 0.946 20 C -0.014 4.014 21 N -0.935 5.935 22 Si 0.966 3.034 23 H -0.256 1.256 24 H -0.276 1.276 25 H -0.231 1.231 26 C -0.122 4.122 27 C 0.101 3.899 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.111 0.889 36 H 0.110 0.890 37 H 0.076 0.924 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.059 0.941 41 H 0.078 0.922 42 H 0.036 0.964 43 H 0.089 0.911 44 H 0.341 0.659 45 H 0.073 0.927 46 H 0.117 0.883 47 H 0.390 0.610 48 H 0.279 0.721 49 H 0.069 0.931 50 H 0.105 0.895 51 H 0.114 0.886 52 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -38.049 -7.028 4.211 38.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.165 4.165 3 C -0.020 4.020 4 O -0.324 6.324 5 C -0.030 4.030 6 C 0.294 3.706 7 O -0.462 6.462 8 N -0.340 5.340 9 C -0.009 4.009 10 C -0.165 4.165 11 C -0.100 4.100 12 C -0.062 4.062 13 N -0.322 5.322 14 C -0.071 4.071 15 C 0.234 3.766 16 O -0.500 6.500 17 N -0.232 5.232 18 C -0.460 4.460 19 H 0.072 0.928 20 C -0.213 4.213 21 N -0.576 5.576 22 Si 0.786 3.214 23 H -0.180 1.180 24 H -0.201 1.201 25 H -0.154 1.154 26 C -0.160 4.160 27 C -0.021 4.021 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.128 0.872 36 H 0.127 0.873 37 H 0.094 0.906 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.078 0.922 41 H 0.096 0.904 42 H 0.054 0.946 43 H 0.108 0.892 44 H 0.160 0.840 45 H 0.091 0.909 46 H 0.135 0.865 47 H 0.226 0.774 48 H 0.089 0.911 49 H 0.088 0.912 50 H 0.123 0.877 51 H 0.132 0.868 52 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -37.176 -7.534 5.222 38.289 hybrid contribution 0.869 -0.184 -1.391 1.650 sum -36.307 -7.718 3.831 37.315 Atomic orbital electron populations 1.21665 0.92867 1.02815 1.02804 1.21492 0.97116 0.95465 1.02449 1.22826 0.78700 0.98557 1.01870 1.87977 1.21689 1.26993 1.95784 1.22378 0.88846 0.86615 1.05158 1.21010 0.90370 0.83657 0.75560 1.90704 1.75733 1.28527 1.51223 1.48194 1.06484 1.06795 1.72492 1.21496 0.79348 1.00821 0.99196 1.21972 1.00527 0.95966 0.97986 1.21174 0.95843 0.93505 0.99463 1.22104 0.86054 1.00920 0.97089 1.60152 1.04874 1.21332 1.45805 1.21635 0.89241 1.01646 0.94533 1.21069 0.90387 0.81682 0.83416 1.90543 1.75463 1.50601 1.33391 1.42029 1.06540 1.49030 1.25645 1.19023 0.82567 1.32995 1.11455 0.92788 1.26128 0.95713 0.97691 1.01765 1.69808 1.06409 1.42397 1.38952 0.85351 0.79456 0.79569 0.77045 1.18004 1.20089 1.15432 1.21921 0.93375 1.02061 0.98654 1.22141 0.99125 0.80674 1.00118 0.91680 0.91757 0.91626 0.92310 0.92243 0.91362 0.91425 0.87184 0.87274 0.90553 0.91534 0.91479 0.92246 0.90377 0.94598 0.89234 0.83983 0.90916 0.86519 0.77427 0.91140 0.91228 0.87672 0.86787 0.89451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.93 9.91 71.98 0.71 -0.22 16 2 C -0.13 -1.46 6.30 30.60 0.19 -1.27 16 3 C 0.06 0.60 5.94 71.98 0.43 1.03 16 4 O -0.40 -7.74 9.88 -129.94 -1.28 -9.02 16 5 C 0.05 0.61 4.76 71.24 0.34 0.95 16 6 C 0.51 10.73 7.77 87.66 0.68 11.41 16 7 O -0.58 -19.13 15.91 16.01 0.25 -18.88 16 8 N -0.61 -9.86 2.97 -818.81 -2.43 -12.30 16 9 C 0.11 2.28 6.42 86.36 0.55 2.84 16 10 C -0.13 -2.40 5.18 30.78 0.16 -2.24 16 11 C -0.08 -1.22 2.36 -10.66 -0.03 -1.25 16 12 C 0.07 1.18 5.14 86.30 0.44 1.62 16 13 N -0.69 -19.13 6.12 -517.93 -3.17 -22.30 16 14 C 0.06 1.82 6.17 85.56 0.53 2.35 16 15 C 0.45 20.09 7.82 87.66 0.69 20.77 16 16 O -0.62 -34.30 15.78 -3.06 -0.05 -34.35 16 17 N -0.59 -27.79 5.09 -306.98 -1.56 -29.35 16 18 C -0.33 -19.51 10.16 84.04 0.85 -18.65 16 19 H 0.05 3.80 7.39 -2.91 -0.02 3.78 16 20 C -0.01 -0.80 5.50 84.93 0.47 -0.33 16 21 N -0.94 -56.58 13.96 21.67 0.30 -56.28 16 22 Si 0.97 38.51 27.74 68.60 1.90 40.41 16 23 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 24 H -0.28 -10.95 7.11 99.48 0.71 -10.24 16 25 H -0.23 -7.70 6.52 99.48 0.65 -7.05 16 26 C -0.12 -0.99 5.37 30.69 0.16 -0.83 16 27 C 0.10 0.74 6.34 86.38 0.55 1.29 16 28 H 0.06 0.32 8.14 -2.39 -0.02 0.30 16 29 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.06 0.32 8.14 -2.39 -0.02 0.30 16 31 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.07 0.47 8.14 -2.38 -0.02 0.45 16 34 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 35 H 0.11 0.66 7.94 -2.39 -0.02 0.65 16 36 H 0.11 0.68 7.69 -2.39 -0.02 0.66 16 37 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.07 1.69 7.00 -2.39 -0.02 1.67 16 39 H 0.07 1.51 6.63 -2.39 -0.02 1.49 16 40 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 43 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 44 H 0.34 10.51 6.66 -89.70 -0.60 9.92 16 45 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 46 H 0.12 2.81 8.14 -2.38 -0.02 2.79 16 47 H 0.39 15.04 5.76 -92.71 -0.53 14.50 16 48 H 0.28 15.41 8.31 -92.71 -0.77 14.64 16 49 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 50 H 0.10 0.43 8.14 -2.38 -0.02 0.41 16 51 H 0.11 0.14 5.93 -2.39 -0.01 0.13 16 52 H 0.09 0.51 8.14 -2.38 -0.02 0.50 16 Total: -1.00 -88.50 415.07 0.42 -88.08 By element: Atomic # 1 Polarization: 36.77 SS G_CDS: -0.28 Total: 36.49 kcal Atomic # 6 Polarization: 10.75 SS G_CDS: 6.73 Total: 17.48 kcal Atomic # 7 Polarization: -113.35 SS G_CDS: -6.87 Total: -120.22 kcal Atomic # 8 Polarization: -61.17 SS G_CDS: -1.08 Total: -62.25 kcal Atomic # 14 Polarization: 38.51 SS G_CDS: 1.90 Total: 40.41 kcal Total: -88.50 0.42 -88.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204698302.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.268 kcal (2) G-P(sol) polarization free energy of solvation -88.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds