Wall clock time and date at job start Wed Apr 1 2020 01:27:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42891 * 114.00214 * 2 1 4 4 C 1.53000 * 109.47565 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.47249 * 179.97438 * 4 3 2 6 6 C 1.52998 * 109.46961 * 179.97438 * 5 4 3 7 7 C 1.50700 * 109.47350 * 179.97438 * 6 5 4 8 8 O 1.21281 * 119.99525 * 0.02562 * 7 6 5 9 9 N 1.34773 * 120.00315 * 179.97438 * 7 6 5 10 10 C 1.46495 * 120.00302 * 180.02562 * 9 7 6 11 11 H 1.09006 * 110.28689 * 32.87183 * 10 9 7 12 12 C 1.54381 * 110.40875 * 270.69210 * 10 9 7 13 13 N 1.48568 * 104.59175 * 264.90942 * 12 10 9 14 14 C 1.46897 * 110.99712 * 200.96296 * 13 12 10 15 15 C 1.50701 * 109.47237 * 290.12360 * 14 13 12 16 16 O 1.21301 * 119.99808 * 0.02562 * 15 14 13 17 17 N 1.34777 * 120.00445 * 180.02562 * 15 14 13 18 18 C 1.37098 * 119.99970 * 179.97438 * 17 15 14 19 19 H 1.07994 * 120.00128 * 0.02562 * 18 17 15 20 20 C 1.38951 * 119.99632 * 179.97438 * 18 17 15 21 21 N 1.31408 * 120.00175 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99883 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47318 * 90.00161 * 22 20 18 24 24 H 1.48502 * 109.47176 * 210.00058 * 22 20 18 25 25 H 1.48499 * 109.47040 * 329.99687 * 22 20 18 26 26 C 1.48561 * 104.22108 * 320.51487 * 13 12 10 27 27 C 1.54259 * 110.32746 * 155.00250 * 10 9 7 28 28 H 1.08999 * 110.32427 * 359.97438 * 27 10 9 29 29 C 1.53006 * 110.32130 * 237.89543 * 27 10 9 30 30 H 1.09007 * 109.47263 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47382 * 299.99671 * 1 2 3 32 32 H 1.08999 * 109.47691 * 60.00135 * 1 2 3 33 33 H 1.09001 * 109.47212 * 59.99563 * 3 2 1 34 34 H 1.09003 * 109.47260 * 300.00171 * 3 2 1 35 35 H 1.08998 * 109.46842 * 59.99615 * 4 3 2 36 36 H 1.09003 * 109.46857 * 300.00277 * 4 3 2 37 37 H 1.09000 * 109.46911 * 60.00294 * 5 4 3 38 38 H 1.08995 * 109.47240 * 300.00151 * 5 4 3 39 39 H 1.09001 * 109.47275 * 59.99850 * 6 5 4 40 40 H 1.09003 * 109.47196 * 300.00458 * 6 5 4 41 41 H 0.97004 * 120.00150 * 0.02562 * 9 7 6 42 42 H 1.08992 * 110.41606 * 23.68939 * 12 10 9 43 43 H 1.09007 * 110.41085 * 146.01632 * 12 10 9 44 44 H 1.08994 * 109.47573 * 50.12176 * 14 13 12 45 45 H 1.08998 * 109.47283 * 170.13003 * 14 13 12 46 46 H 0.96998 * 119.99464 * 0.02562 * 17 15 14 47 47 H 0.97000 * 120.00271 * 179.97438 * 21 20 18 48 48 H 1.08998 * 110.41386 * 280.70938 * 26 13 12 49 49 H 1.09004 * 110.40913 * 158.26170 * 26 13 12 50 50 H 1.09001 * 109.46801 * 59.99826 * 29 27 10 51 51 H 1.09001 * 109.46998 * 179.97438 * 29 27 10 52 52 H 1.09000 * 109.47050 * 299.99713 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 6 4.1577 2.5823 -0.0013 6 6 5.6829 2.4615 -0.0013 7 6 6.2959 3.8382 -0.0026 8 8 5.5830 4.8194 -0.0029 9 7 7.6363 3.9791 -0.0023 10 6 8.2322 5.3174 -0.0029 11 1 7.6013 6.0123 0.5514 12 6 8.4356 5.8154 -1.4500 13 7 9.8422 5.4626 -1.7729 14 6 10.3477 6.2791 -2.8846 15 6 9.6600 5.8700 -4.1616 16 8 8.8300 4.9855 -4.1470 17 7 9.9671 6.4867 -5.3199 18 6 9.3418 6.1141 -6.4817 19 1 8.6029 5.3267 -6.4687 20 6 9.6581 6.7504 -7.6758 21 7 10.5569 7.7089 -7.6916 22 14 8.8057 6.2433 -9.2587 23 1 7.5753 7.0547 -9.4403 24 1 9.7202 6.4671 -10.4071 25 1 8.4440 4.8048 -9.1871 26 6 10.5873 5.7494 -0.5201 27 6 9.6477 5.2740 0.6088 28 1 9.8989 4.2570 0.9100 29 6 9.7373 6.2195 1.8084 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.6885 1.8463 0.8899 34 1 1.6886 1.8463 -0.8900 35 1 3.8566 0.6438 -0.8908 36 1 3.8574 0.6435 0.8891 37 1 3.8365 3.1234 0.8887 38 1 3.8357 3.1230 -0.8912 39 1 6.0045 1.9202 -0.8910 40 1 6.0046 1.9209 0.8889 41 1 8.2065 3.1943 -0.0016 42 1 7.7507 5.3055 -2.1274 43 1 8.2902 6.8943 -1.5047 44 1 10.1454 7.3311 -2.6840 45 1 11.4224 6.1287 -2.9865 46 1 10.6311 7.1937 -5.3316 47 1 10.7780 8.1529 -8.5252 48 1 10.7806 6.8182 -0.4289 49 1 11.5224 5.1897 -0.4973 50 1 9.0134 5.9163 2.5648 51 1 10.7417 6.1777 2.2297 52 1 9.5205 7.2377 1.4855 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206495576.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:27:38 Heat of formation + Delta-G solvation = -129.780595 kcal Electronic energy + Delta-G solvation = -29746.339671 eV Core-core repulsion = 25552.323793 eV Total energy + Delta-G solvation = -4194.015879 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.19613 -38.89267 -38.23479 -37.63918 -34.94504 -34.34625 -33.78825 -32.64987 -31.19783 -30.35207 -28.69076 -27.41737 -26.74395 -25.33836 -24.38669 -23.52664 -21.69379 -21.18195 -20.47868 -19.89102 -19.05475 -17.81738 -16.99938 -16.77794 -16.61765 -16.44982 -15.78530 -15.66140 -15.36857 -15.21318 -15.05807 -14.50421 -14.27720 -14.00077 -13.84236 -13.72302 -13.16865 -13.04028 -12.94801 -12.79562 -12.55789 -12.33274 -12.07166 -11.86959 -11.82354 -11.73462 -11.63431 -11.49045 -11.32563 -11.21349 -11.18371 -10.99817 -10.89903 -10.84549 -10.79235 -10.37531 -10.19712 -9.96196 -9.73975 -9.46982 -8.94927 -8.48865 -8.01579 -7.92179 -6.39462 -3.79998 2.71663 3.15337 3.19404 3.27733 3.33760 3.52324 3.93090 4.04821 4.27770 4.43508 4.63500 4.64073 4.68907 4.73936 4.92001 4.97847 4.99334 5.07288 5.07892 5.13675 5.15750 5.26819 5.31284 5.32473 5.35971 5.43759 5.48383 5.51063 5.53806 5.57658 5.65934 5.70237 5.77127 5.80495 5.82945 5.90712 5.99017 6.03388 6.09410 6.14864 6.29493 6.41521 6.63738 6.85461 7.10780 7.20763 7.57316 7.58078 8.08595 8.30710 8.64469 9.20710 9.57063 10.09237 10.78398 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.007461 B = 0.002471 C = 0.001901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3751.746944 B =11327.830102 C =14724.784898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.395 6.395 3 C 0.060 3.940 4 C -0.119 4.119 5 C -0.101 4.101 6 C -0.139 4.139 7 C 0.514 3.486 8 O -0.545 6.545 9 N -0.714 5.714 10 C 0.144 3.856 11 H 0.094 0.906 12 C 0.028 3.972 13 N -0.484 5.484 14 C 0.034 3.966 15 C 0.445 3.555 16 O -0.577 6.577 17 N -0.566 5.566 18 C -0.297 4.297 19 H 0.102 0.898 20 C 0.021 3.979 21 N -0.903 5.903 22 Si 0.929 3.071 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.270 1.270 26 C 0.032 3.968 27 C -0.101 4.101 28 H 0.085 0.915 29 C -0.143 4.143 30 H 0.085 0.915 31 H 0.040 0.960 32 H 0.041 0.959 33 H 0.049 0.951 34 H 0.051 0.949 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.074 0.926 39 H 0.097 0.903 40 H 0.092 0.908 41 H 0.402 0.598 42 H 0.103 0.897 43 H 0.044 0.956 44 H 0.050 0.950 45 H 0.089 0.911 46 H 0.391 0.609 47 H 0.271 0.729 48 H 0.046 0.954 49 H 0.082 0.918 50 H 0.057 0.943 51 H 0.060 0.940 52 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.990 -8.267 20.769 23.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.314 6.314 3 C -0.017 4.017 4 C -0.156 4.156 5 C -0.139 4.139 6 C -0.179 4.179 7 C 0.300 3.700 8 O -0.422 6.422 9 N -0.365 5.365 10 C 0.039 3.961 11 H 0.112 0.888 12 C -0.101 4.101 13 N -0.207 5.207 14 C -0.098 4.098 15 C 0.230 3.770 16 O -0.460 6.460 17 N -0.203 5.203 18 C -0.426 4.426 19 H 0.120 0.880 20 C -0.180 4.180 21 N -0.544 5.544 22 Si 0.757 3.243 23 H -0.205 1.205 24 H -0.209 1.209 25 H -0.194 1.194 26 C -0.097 4.097 27 C -0.120 4.120 28 H 0.103 0.897 29 C -0.200 4.200 30 H 0.103 0.897 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.092 0.908 39 H 0.116 0.884 40 H 0.110 0.890 41 H 0.237 0.763 42 H 0.121 0.879 43 H 0.062 0.938 44 H 0.068 0.932 45 H 0.107 0.893 46 H 0.225 0.775 47 H 0.081 0.919 48 H 0.064 0.936 49 H 0.101 0.899 50 H 0.076 0.924 51 H 0.079 0.921 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.824 -8.762 20.426 23.563 hybrid contribution 0.196 1.086 -0.806 1.366 sum -7.628 -7.676 19.620 22.407 Atomic orbital electron populations 1.22732 0.81075 1.02675 1.00023 1.87857 1.19703 1.28376 1.95456 1.22572 0.94268 0.84412 1.00426 1.21535 0.92975 0.97679 1.03452 1.21224 0.92939 0.95873 1.03898 1.21642 0.96828 0.94819 1.04646 1.20675 0.82199 0.91670 0.75412 1.90695 1.61034 1.40871 1.49635 1.46010 1.06629 1.08831 1.75034 1.21795 0.93420 0.84690 0.96206 0.88792 1.23592 0.91791 0.98838 0.95856 1.65173 1.02112 1.51089 1.02373 1.22060 1.00347 0.95274 0.92083 1.19703 0.86786 0.86005 0.84487 1.90507 1.36362 1.33142 1.86038 1.41854 1.37956 1.34167 1.06284 1.19681 1.20161 1.18583 0.84204 0.87988 1.25253 0.97035 0.96169 0.99571 1.69610 1.32295 1.24155 1.28370 0.85866 0.78714 0.79169 0.80594 1.20453 1.20941 1.19422 1.23268 0.97609 0.99315 0.89493 1.22165 0.93991 1.00679 0.95197 0.89652 1.21837 1.01964 0.99202 0.97030 0.89693 0.94146 0.94006 0.93270 0.93061 0.90831 0.91108 0.91124 0.90757 0.88431 0.88983 0.76350 0.87857 0.93788 0.93241 0.89257 0.77545 0.91930 0.93618 0.89949 0.92378 0.92129 0.92356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.34 16 2 O -0.39 -4.03 10.70 -35.23 -0.38 -4.41 16 3 C 0.06 0.54 5.94 37.16 0.22 0.76 16 4 C -0.12 -1.02 5.58 -26.73 -0.15 -1.17 16 5 C -0.10 -0.99 4.50 -26.73 -0.12 -1.11 16 6 C -0.14 -1.31 5.70 -27.88 -0.16 -1.47 16 7 C 0.51 6.73 7.83 -10.99 -0.09 6.65 16 8 O -0.55 -9.25 15.63 5.56 0.09 -9.16 16 9 N -0.71 -8.52 5.07 -52.47 -0.27 -8.79 16 10 C 0.14 1.87 3.05 -66.55 -0.20 1.66 16 11 H 0.09 1.28 7.13 -51.93 -0.37 0.91 16 12 C 0.03 0.47 5.52 -2.18 -0.01 0.46 16 13 N -0.48 -7.91 5.06 -231.41 -1.17 -9.08 16 14 C 0.03 0.62 5.30 -4.98 -0.03 0.59 16 15 C 0.44 10.65 7.59 -10.98 -0.08 10.57 16 16 O -0.58 -15.74 14.42 5.54 0.08 -15.66 16 17 N -0.57 -14.53 5.29 -10.96 -0.06 -14.59 16 18 C -0.30 -8.38 9.68 -14.93 -0.14 -8.52 16 19 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 20 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 21 N -0.90 -24.81 13.05 55.50 0.72 -24.09 16 22 Si 0.93 21.36 29.55 -169.99 -5.02 16.34 16 23 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 24 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 25 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 26 C 0.03 0.38 6.03 -2.18 -0.01 0.36 16 27 C -0.10 -1.02 3.42 -89.24 -0.30 -1.33 16 28 H 0.09 0.77 7.67 -51.93 -0.40 0.37 16 29 C -0.14 -1.18 8.92 37.16 0.33 -0.85 16 30 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.71 8.10 -51.93 -0.42 0.29 16 38 H 0.07 0.85 8.10 -51.93 -0.42 0.43 16 39 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.40 3.91 8.36 -40.82 -0.34 3.57 16 42 H 0.10 2.16 6.82 -51.93 -0.35 1.81 16 43 H 0.04 0.74 7.83 -51.93 -0.41 0.34 16 44 H 0.05 0.82 7.88 -51.93 -0.41 0.41 16 45 H 0.09 1.44 8.13 -51.93 -0.42 1.02 16 46 H 0.39 9.61 7.90 -40.82 -0.32 9.29 16 47 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 48 H 0.05 0.51 7.68 -51.93 -0.40 0.11 16 49 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 50 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 51 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 52 H 0.06 0.50 8.10 -51.93 -0.42 0.08 16 LS Contribution 422.52 15.07 6.37 6.37 Total: -1.00 -34.46 422.52 -8.64 -43.10 By element: Atomic # 1 Polarization: 20.84 SS G_CDS: -9.27 Total: 11.57 kcal Atomic # 6 Polarization: 8.14 SS G_CDS: 0.27 Total: 8.40 kcal Atomic # 7 Polarization: -55.77 SS G_CDS: -0.77 Total: -56.54 kcal Atomic # 8 Polarization: -29.02 SS G_CDS: -0.21 Total: -29.24 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 6.37 Total: 6.37 kcal Total: -34.46 -8.64 -43.10 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206495576.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.683 kcal (2) G-P(sol) polarization free energy of solvation -34.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds