Wall clock time and date at job start Wed Apr 1 2020 01:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42906 * 114.00036 * 2 1 4 4 H 1.08996 * 109.46799 * 329.98948 * 3 2 1 5 5 C 1.52997 * 109.47321 * 89.99767 * 3 2 1 6 6 C 1.53006 * 109.46748 * 209.99666 * 3 2 1 7 7 C 1.53005 * 109.46991 * 64.99852 * 6 3 2 8 8 C 1.50696 * 109.46948 * 179.97438 * 7 6 3 9 9 O 1.21286 * 119.99897 * 0.02562 * 8 7 6 10 10 N 1.34773 * 120.00001 * 179.97438 * 8 7 6 11 11 C 1.46506 * 120.00057 * 179.97438 * 10 8 7 12 12 H 1.09006 * 110.26927 * 34.30712 * 11 10 8 13 13 C 1.53986 * 110.31127 * 272.21478 * 11 10 8 14 14 N 1.48129 * 106.94604 * 242.33393 * 13 11 10 15 15 C 1.46903 * 110.95315 * 214.10179 * 14 13 11 16 16 C 1.50697 * 109.47402 * 307.37367 * 15 14 13 17 17 O 1.21297 * 119.99913 * 359.97438 * 16 15 14 18 18 N 1.34773 * 119.99941 * 180.02562 * 16 15 14 19 19 C 1.37101 * 119.99519 * 180.02562 * 18 16 15 20 20 H 1.07994 * 120.00422 * 359.97438 * 19 18 16 21 21 C 1.38952 * 119.99771 * 179.97438 * 19 18 16 22 22 N 1.31416 * 119.99913 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00244 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46944 * 90.00209 * 23 21 19 25 25 H 1.48502 * 109.47047 * 210.00196 * 23 21 19 26 26 H 1.48499 * 109.46822 * 330.00248 * 23 21 19 27 27 C 1.48530 * 105.82125 * 334.59344 * 14 13 11 28 28 C 1.54597 * 110.30947 * 156.39348 * 11 10 8 29 29 H 1.09002 * 110.72323 * 22.33436 * 28 11 10 30 30 C 1.53011 * 110.72230 * 259.23669 * 28 11 10 31 31 H 1.09001 * 109.47434 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47624 * 300.00711 * 1 2 3 33 33 H 1.09004 * 109.47067 * 60.00406 * 1 2 3 34 34 H 1.09002 * 109.47153 * 299.99798 * 5 3 2 35 35 H 1.09001 * 109.46832 * 179.97438 * 5 3 2 36 36 H 1.09004 * 109.47261 * 59.99970 * 5 3 2 37 37 H 1.08996 * 109.46945 * 184.99432 * 6 3 2 38 38 H 1.09000 * 109.47314 * 304.99554 * 6 3 2 39 39 H 1.08996 * 109.46933 * 299.99587 * 7 6 3 40 40 H 1.09006 * 109.47013 * 60.00029 * 7 6 3 41 41 H 0.96996 * 120.00337 * 0.02562 * 10 8 7 42 42 H 1.08998 * 109.92100 * 1.66053 * 13 11 10 43 43 H 1.09005 * 109.91895 * 122.95661 * 13 11 10 44 44 H 1.08999 * 109.46701 * 67.36964 * 15 14 13 45 45 H 1.09000 * 109.46821 * 187.36750 * 15 14 13 46 46 H 0.96994 * 120.00456 * 359.97438 * 18 16 15 47 47 H 0.96999 * 119.99927 * 180.02562 * 22 21 19 48 48 H 1.08996 * 110.67166 * 280.82512 * 27 14 13 49 49 H 1.09007 * 110.80829 * 157.76448 * 27 14 13 50 50 H 1.08998 * 109.47054 * 59.99972 * 30 28 11 51 51 H 1.08998 * 109.46488 * 179.97438 * 30 28 11 52 52 H 1.08992 * 109.46447 * 299.99750 * 30 28 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9993 -0.5140 5 6 2.2176 1.7715 1.4425 6 6 3.3589 1.2632 -0.7212 7 6 3.1383 0.9182 -2.1955 8 6 4.4667 0.8772 -2.9059 9 8 5.4892 1.1012 -2.2933 10 7 4.5185 0.5904 -4.2218 11 6 5.8099 0.5510 -4.9126 12 1 6.5844 0.1746 -4.2443 13 6 6.1835 1.9533 -5.4277 14 7 6.2609 1.8644 -6.9043 15 6 7.3044 2.7546 -7.4302 16 6 7.0913 4.1481 -6.8975 17 8 6.1613 4.3773 -6.1533 18 7 7.9335 5.1399 -7.2488 19 6 7.7399 6.4075 -6.7637 20 1 6.9123 6.6114 -6.1005 21 6 8.6085 7.4300 -7.1254 22 7 9.6152 7.1821 -7.9329 23 14 8.3443 9.1574 -6.4651 24 1 9.0841 9.3174 -5.1875 25 1 8.8437 10.1468 -7.4535 26 1 6.8953 9.3810 -6.2296 27 6 6.5698 0.4439 -7.2088 28 6 5.7154 -0.3339 -6.1767 29 1 4.6818 -0.4179 -6.5124 30 6 6.3113 -1.7185 -5.9140 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 1.2567 1.8016 1.9563 35 1 2.6614 2.7671 1.4424 36 1 2.8828 1.0776 1.9564 37 1 3.8427 2.2369 -0.6444 38 1 3.9931 0.5051 -0.2616 39 1 2.6546 -0.0555 -2.2723 40 1 2.5041 1.6764 -2.6551 41 1 3.7008 0.4109 -4.7116 42 1 5.4167 2.6718 -5.1381 43 1 7.1495 2.2530 -5.0212 44 1 8.2833 2.3917 -7.1169 45 1 7.2540 2.7701 -8.5189 46 1 8.6770 4.9568 -7.8442 47 1 10.2218 7.8957 -8.1851 48 1 7.6305 0.2406 -7.0614 49 1 6.2689 0.1915 -8.2257 50 1 5.7645 -2.2017 -5.1043 51 1 6.2337 -2.3245 -6.8167 52 1 7.3595 -1.6156 -5.6339 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206894983.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:27:44 Heat of formation + Delta-G solvation = -124.416793 kcal Electronic energy + Delta-G solvation = -30271.912914 eV Core-core repulsion = 26078.129627 eV Total energy + Delta-G solvation = -4193.783287 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.18247 -39.07052 -38.45869 -37.55428 -34.44939 -33.88896 -33.80764 -32.53262 -31.23496 -30.58260 -28.72369 -27.32993 -26.97835 -25.39222 -24.69688 -23.56874 -21.55664 -21.11365 -20.54690 -19.89150 -19.04801 -17.79535 -17.21424 -16.96496 -16.69721 -15.92522 -15.54108 -15.37486 -15.22197 -15.06505 -14.84717 -14.55400 -14.10094 -13.80690 -13.78816 -13.52326 -13.26352 -13.15118 -13.03854 -12.81994 -12.53726 -12.47226 -12.18310 -12.00264 -11.80732 -11.72824 -11.59355 -11.52452 -11.33960 -11.28187 -11.17906 -11.04635 -10.83613 -10.78149 -10.70019 -10.37200 -10.20452 -9.95337 -9.68794 -9.48635 -8.94165 -8.38066 -7.98428 -7.90406 -6.40379 -3.80979 2.74475 3.18910 3.21228 3.27380 3.33327 3.49733 3.91558 4.08464 4.27478 4.43515 4.52591 4.61980 4.74328 4.81173 4.96646 4.97705 5.00965 5.04637 5.07648 5.12428 5.26471 5.28213 5.32908 5.35230 5.42409 5.44539 5.46848 5.56051 5.58475 5.64629 5.72744 5.79561 5.83087 5.85565 5.89488 5.93781 5.98032 6.10094 6.14270 6.16543 6.29694 6.49760 6.78897 6.92190 7.20861 7.27653 7.56624 7.58029 8.07300 8.32744 8.62892 9.19316 9.55338 10.07030 10.77388 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.009390 B = 0.002523 C = 0.002059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2981.212872 B =11096.915771 C =13596.910143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.385 6.385 3 C 0.083 3.917 4 H 0.062 0.938 5 C -0.175 4.175 6 C -0.101 4.101 7 C -0.138 4.138 8 C 0.513 3.487 9 O -0.540 6.540 10 N -0.718 5.718 11 C 0.133 3.867 12 H 0.091 0.909 13 C 0.043 3.957 14 N -0.495 5.495 15 C 0.035 3.965 16 C 0.441 3.559 17 O -0.580 6.580 18 N -0.563 5.563 19 C -0.298 4.298 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.930 3.070 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.270 1.270 27 C 0.036 3.964 28 C -0.099 4.099 29 H 0.087 0.913 30 C -0.142 4.142 31 H 0.083 0.917 32 H 0.039 0.961 33 H 0.041 0.959 34 H 0.055 0.945 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.086 0.914 38 H 0.079 0.921 39 H 0.097 0.903 40 H 0.091 0.909 41 H 0.399 0.601 42 H 0.106 0.894 43 H 0.045 0.955 44 H 0.049 0.951 45 H 0.091 0.909 46 H 0.392 0.608 47 H 0.271 0.729 48 H 0.046 0.954 49 H 0.083 0.917 50 H 0.057 0.943 51 H 0.059 0.941 52 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.616 -18.129 8.445 24.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.304 6.304 3 C 0.026 3.974 4 H 0.080 0.920 5 C -0.232 4.232 6 C -0.139 4.139 7 C -0.178 4.178 8 C 0.299 3.701 9 O -0.417 6.417 10 N -0.370 5.370 11 C 0.028 3.972 12 H 0.109 0.891 13 C -0.086 4.086 14 N -0.220 5.220 15 C -0.096 4.096 16 C 0.227 3.773 17 O -0.465 6.465 18 N -0.199 5.199 19 C -0.427 4.427 20 H 0.120 0.880 21 C -0.180 4.180 22 N -0.543 5.543 23 Si 0.757 3.243 24 H -0.204 1.204 25 H -0.209 1.209 26 H -0.194 1.194 27 C -0.092 4.092 28 C -0.119 4.119 29 H 0.106 0.894 30 C -0.200 4.200 31 H 0.102 0.898 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.074 0.926 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.104 0.896 38 H 0.097 0.903 39 H 0.115 0.885 40 H 0.109 0.891 41 H 0.234 0.766 42 H 0.124 0.876 43 H 0.064 0.936 44 H 0.067 0.933 45 H 0.109 0.891 46 H 0.225 0.775 47 H 0.081 0.919 48 H 0.064 0.936 49 H 0.102 0.898 50 H 0.076 0.924 51 H 0.078 0.922 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -13.716 -17.652 9.073 24.126 hybrid contribution 0.655 0.810 -0.106 1.047 sum -13.061 -16.842 8.967 23.122 Atomic orbital electron populations 1.22771 0.81419 1.02574 0.99898 1.87934 1.19333 1.28055 1.95094 1.22226 0.94979 0.84469 0.95763 0.91993 1.22267 1.02192 1.02059 0.96695 1.21464 0.95446 1.04012 0.92961 1.21632 0.95344 1.04403 0.96440 1.20701 0.91528 0.75893 0.81950 1.90715 1.36362 1.48426 1.66188 1.46043 1.09510 1.71981 1.09451 1.22054 0.86018 0.96080 0.93097 0.89096 1.23337 1.02721 0.95607 0.86910 1.64703 1.42783 1.03075 1.11390 1.22112 0.93185 0.93381 1.00959 1.19734 0.85507 0.85985 0.86102 1.90498 1.32862 1.83222 1.39872 1.41845 1.26529 1.08063 1.43477 1.19689 1.12495 0.83961 1.26566 0.87957 1.25265 0.95574 1.00297 0.96847 1.69614 1.15740 1.34228 1.34740 0.85859 0.78824 0.81289 0.78327 1.20419 1.20917 1.19418 1.23346 0.97749 0.88782 0.99331 1.22321 1.00780 0.94371 0.94415 0.89424 1.21778 1.00995 0.95558 1.01649 0.89809 0.94253 0.94006 0.92616 0.91288 0.91639 0.89591 0.90269 0.88486 0.89072 0.76616 0.87619 0.93636 0.93283 0.89100 0.77471 0.91888 0.93573 0.89821 0.92431 0.92197 0.92430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.82 101.05 1.09 1.29 16 2 O -0.38 -3.60 9.88 -35.23 -0.35 -3.95 16 3 C 0.08 0.73 2.72 -26.73 -0.07 0.65 16 4 H 0.06 0.48 7.79 -51.93 -0.40 0.07 16 5 C -0.17 -1.39 9.53 37.16 0.35 -1.04 16 6 C -0.10 -1.06 4.21 -26.73 -0.11 -1.17 16 7 C -0.14 -1.37 5.60 -27.88 -0.16 -1.53 16 8 C 0.51 6.96 7.83 -10.99 -0.09 6.87 16 9 O -0.54 -9.64 15.66 5.55 0.09 -9.55 16 10 N -0.72 -8.68 5.02 -52.49 -0.26 -8.94 16 11 C 0.13 1.82 2.89 -66.57 -0.19 1.63 16 12 H 0.09 1.36 7.31 -51.93 -0.38 0.98 16 13 C 0.04 0.77 4.87 -2.63 -0.01 0.76 16 14 N -0.50 -8.35 5.27 -231.70 -1.22 -9.57 16 15 C 0.04 0.65 5.48 -4.98 -0.03 0.62 16 16 C 0.44 10.63 7.36 -10.99 -0.08 10.55 16 17 O -0.58 -15.77 13.37 5.54 0.07 -15.69 16 18 N -0.56 -14.53 5.29 -10.96 -0.06 -14.59 16 19 C -0.30 -8.42 9.68 -14.93 -0.14 -8.57 16 20 H 0.10 3.04 7.16 -52.49 -0.38 2.67 16 21 C 0.02 0.59 5.50 -17.46 -0.10 0.49 16 22 N -0.90 -24.85 13.05 55.50 0.72 -24.12 16 23 Si 0.93 21.39 29.55 -169.99 -5.02 16.36 16 24 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 26 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 27 C 0.04 0.45 6.00 -1.90 -0.01 0.44 16 28 C -0.10 -1.07 3.37 -88.76 -0.30 -1.37 16 29 H 0.09 0.86 7.74 -51.93 -0.40 0.46 16 30 C -0.14 -1.25 9.16 37.16 0.34 -0.91 16 31 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.04 0.22 7.87 -51.93 -0.41 -0.19 16 33 H 0.04 0.23 8.09 -51.93 -0.42 -0.19 16 34 H 0.05 0.39 7.87 -51.93 -0.41 -0.02 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.09 0.98 8.10 -51.93 -0.42 0.56 16 38 H 0.08 0.93 8.10 -51.93 -0.42 0.51 16 39 H 0.10 0.82 7.82 -51.93 -0.41 0.42 16 40 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.40 3.70 8.36 -40.82 -0.34 3.36 16 42 H 0.11 2.26 6.53 -51.93 -0.34 1.92 16 43 H 0.05 0.92 7.60 -51.93 -0.39 0.53 16 44 H 0.05 0.83 7.89 -51.93 -0.41 0.42 16 45 H 0.09 1.51 8.14 -51.93 -0.42 1.08 16 46 H 0.39 9.68 7.90 -40.82 -0.32 9.36 16 47 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 48 H 0.05 0.55 7.73 -51.93 -0.40 0.15 16 49 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 50 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 51 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 52 H 0.06 0.53 8.10 -51.93 -0.42 0.11 16 LS Contribution 418.81 15.07 6.31 6.31 Total: -1.00 -34.17 418.81 -8.41 -42.59 By element: Atomic # 1 Polarization: 21.63 SS G_CDS: -9.19 Total: 12.44 kcal Atomic # 6 Polarization: 8.22 SS G_CDS: 0.50 Total: 8.72 kcal Atomic # 7 Polarization: -56.40 SS G_CDS: -0.82 Total: -57.22 kcal Atomic # 8 Polarization: -29.01 SS G_CDS: -0.19 Total: -29.20 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -34.17 -8.41 -42.59 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206894983.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.831 kcal (2) G-P(sol) polarization free energy of solvation -34.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds