Wall clock time and date at job start Wed Apr 1 2020 01:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42906 * 114.00036 * 2 1 4 4 H 1.08996 * 109.46799 * 329.98948 * 3 2 1 5 5 C 1.52997 * 109.47321 * 89.99767 * 3 2 1 6 6 C 1.53006 * 109.46748 * 209.99666 * 3 2 1 7 7 C 1.53005 * 109.46991 * 64.99852 * 6 3 2 8 8 C 1.50696 * 109.46948 * 179.97438 * 7 6 3 9 9 O 1.21286 * 119.99897 * 0.02562 * 8 7 6 10 10 N 1.34773 * 120.00001 * 179.97438 * 8 7 6 11 11 C 1.46506 * 120.00057 * 179.97438 * 10 8 7 12 12 H 1.09006 * 110.26927 * 34.30712 * 11 10 8 13 13 C 1.53986 * 110.31127 * 272.21478 * 11 10 8 14 14 N 1.48129 * 106.94604 * 242.33393 * 13 11 10 15 15 C 1.46903 * 110.95315 * 214.10179 * 14 13 11 16 16 C 1.50697 * 109.47402 * 307.37367 * 15 14 13 17 17 O 1.21297 * 119.99913 * 359.97438 * 16 15 14 18 18 N 1.34773 * 119.99941 * 180.02562 * 16 15 14 19 19 C 1.37101 * 119.99519 * 180.02562 * 18 16 15 20 20 H 1.07994 * 120.00422 * 359.97438 * 19 18 16 21 21 C 1.38952 * 119.99771 * 179.97438 * 19 18 16 22 22 N 1.31416 * 119.99913 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00244 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46944 * 90.00209 * 23 21 19 25 25 H 1.48502 * 109.47047 * 210.00196 * 23 21 19 26 26 H 1.48499 * 109.46822 * 330.00248 * 23 21 19 27 27 C 1.48530 * 105.82125 * 334.59344 * 14 13 11 28 28 C 1.54597 * 110.30947 * 156.39348 * 11 10 8 29 29 H 1.09002 * 110.72323 * 22.33436 * 28 11 10 30 30 C 1.53011 * 110.72230 * 259.23669 * 28 11 10 31 31 H 1.09001 * 109.47434 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47624 * 300.00711 * 1 2 3 33 33 H 1.09004 * 109.47067 * 60.00406 * 1 2 3 34 34 H 1.09002 * 109.47153 * 299.99798 * 5 3 2 35 35 H 1.09001 * 109.46832 * 179.97438 * 5 3 2 36 36 H 1.09004 * 109.47261 * 59.99970 * 5 3 2 37 37 H 1.08996 * 109.46945 * 184.99432 * 6 3 2 38 38 H 1.09000 * 109.47314 * 304.99554 * 6 3 2 39 39 H 1.08996 * 109.46933 * 299.99587 * 7 6 3 40 40 H 1.09006 * 109.47013 * 60.00029 * 7 6 3 41 41 H 0.96996 * 120.00337 * 0.02562 * 10 8 7 42 42 H 1.08998 * 109.92100 * 1.66053 * 13 11 10 43 43 H 1.09005 * 109.91895 * 122.95661 * 13 11 10 44 44 H 1.08999 * 109.46701 * 67.36964 * 15 14 13 45 45 H 1.09000 * 109.46821 * 187.36750 * 15 14 13 46 46 H 0.96994 * 120.00456 * 359.97438 * 18 16 15 47 47 H 0.96999 * 119.99927 * 180.02562 * 22 21 19 48 48 H 1.08996 * 110.67166 * 280.82512 * 27 14 13 49 49 H 1.09007 * 110.80829 * 157.76448 * 27 14 13 50 50 H 1.08998 * 109.47054 * 59.99972 * 30 28 11 51 51 H 1.08998 * 109.46488 * 179.97438 * 30 28 11 52 52 H 1.08992 * 109.46447 * 299.99750 * 30 28 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9993 -0.5140 5 6 2.2176 1.7715 1.4425 6 6 3.3589 1.2632 -0.7212 7 6 3.1383 0.9182 -2.1955 8 6 4.4667 0.8772 -2.9059 9 8 5.4892 1.1012 -2.2933 10 7 4.5185 0.5904 -4.2218 11 6 5.8099 0.5510 -4.9126 12 1 6.5844 0.1746 -4.2443 13 6 6.1835 1.9533 -5.4277 14 7 6.2609 1.8644 -6.9043 15 6 7.3044 2.7546 -7.4302 16 6 7.0913 4.1481 -6.8975 17 8 6.1613 4.3773 -6.1533 18 7 7.9335 5.1399 -7.2488 19 6 7.7399 6.4075 -6.7637 20 1 6.9123 6.6114 -6.1005 21 6 8.6085 7.4300 -7.1254 22 7 9.6152 7.1821 -7.9329 23 14 8.3443 9.1574 -6.4651 24 1 9.0841 9.3174 -5.1875 25 1 8.8437 10.1468 -7.4535 26 1 6.8953 9.3810 -6.2296 27 6 6.5698 0.4439 -7.2088 28 6 5.7154 -0.3339 -6.1767 29 1 4.6818 -0.4179 -6.5124 30 6 6.3113 -1.7185 -5.9140 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 1.2567 1.8016 1.9563 35 1 2.6614 2.7671 1.4424 36 1 2.8828 1.0776 1.9564 37 1 3.8427 2.2369 -0.6444 38 1 3.9931 0.5051 -0.2616 39 1 2.6546 -0.0555 -2.2723 40 1 2.5041 1.6764 -2.6551 41 1 3.7008 0.4109 -4.7116 42 1 5.4167 2.6718 -5.1381 43 1 7.1495 2.2530 -5.0212 44 1 8.2833 2.3917 -7.1169 45 1 7.2540 2.7701 -8.5189 46 1 8.6770 4.9568 -7.8442 47 1 10.2218 7.8957 -8.1851 48 1 7.6305 0.2406 -7.0614 49 1 6.2689 0.1915 -8.2257 50 1 5.7645 -2.2017 -5.1043 51 1 6.2337 -2.3245 -6.8167 52 1 7.3595 -1.6156 -5.6339 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206894983.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:27:43 Heat of formation + Delta-G solvation = -151.381458 kcal Electronic energy + Delta-G solvation = -30273.082189 eV Core-core repulsion = 26078.129627 eV Total energy + Delta-G solvation = -4194.952562 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.37079 -40.43380 -39.42493 -38.96983 -36.11806 -35.42088 -34.69755 -33.63530 -33.29210 -31.38539 -30.00163 -28.63585 -27.52538 -26.84339 -25.93959 -24.78258 -22.67281 -21.95576 -21.77001 -20.98710 -20.80912 -19.84305 -18.11254 -17.84788 -17.80127 -17.58747 -16.73895 -16.58426 -16.30713 -16.22495 -15.99976 -15.88133 -15.53868 -15.45214 -14.99350 -14.55771 -14.40424 -14.18082 -14.03147 -13.92418 -13.55405 -13.43613 -13.32695 -13.20517 -13.19384 -13.05127 -12.94811 -12.65943 -12.45561 -12.43842 -12.28489 -12.21194 -12.13604 -12.07646 -11.83924 -11.67574 -11.54675 -11.51103 -10.89955 -10.51643 -10.30963 -10.08274 -10.00489 -9.38212 -8.49645 -5.98393 1.34954 1.38484 1.51540 1.65204 2.00824 2.20763 2.26151 2.82798 2.88221 3.16575 3.23696 3.56298 3.68892 3.73442 3.80186 4.01028 4.11088 4.17158 4.20591 4.32280 4.34246 4.35724 4.45640 4.49199 4.51560 4.55613 4.59449 4.63900 4.67316 4.74516 4.78246 4.81891 4.89415 4.91334 4.97300 4.99805 5.04568 5.13179 5.19360 5.21350 5.31210 5.35661 5.37888 5.58346 5.78778 5.90874 6.06587 6.32161 6.56999 6.58222 7.09443 7.29377 7.51771 8.07839 8.67845 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.009390 B = 0.002523 C = 0.002059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2981.212872 B =11096.915771 C =13596.910143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.404 6.404 3 C 0.088 3.912 4 H 0.077 0.923 5 C -0.175 4.175 6 C -0.100 4.100 7 C -0.127 4.127 8 C 0.505 3.495 9 O -0.591 6.591 10 N -0.707 5.707 11 C 0.139 3.861 12 H 0.076 0.924 13 C 0.051 3.949 14 N -0.505 5.505 15 C 0.046 3.954 16 C 0.435 3.565 17 O -0.616 6.616 18 N -0.573 5.573 19 C -0.333 4.333 20 H 0.076 0.924 21 C -0.013 4.013 22 N -0.919 5.919 23 Si 0.993 3.007 24 H -0.273 1.273 25 H -0.267 1.267 26 H -0.273 1.273 27 C 0.035 3.965 28 C -0.085 4.085 29 H 0.107 0.893 30 C -0.136 4.136 31 H 0.095 0.905 32 H 0.046 0.954 33 H 0.052 0.948 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.055 0.945 37 H 0.069 0.931 38 H 0.060 0.940 39 H 0.119 0.881 40 H 0.110 0.890 41 H 0.416 0.584 42 H 0.065 0.935 43 H 0.008 0.992 44 H 0.065 0.935 45 H 0.117 0.883 46 H 0.396 0.604 47 H 0.278 0.722 48 H 0.054 0.946 49 H 0.110 0.890 50 H 0.061 0.939 51 H 0.083 0.917 52 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.976 -19.625 7.337 25.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.323 6.323 3 C 0.030 3.970 4 H 0.095 0.905 5 C -0.232 4.232 6 C -0.138 4.138 7 C -0.167 4.167 8 C 0.294 3.706 9 O -0.471 6.471 10 N -0.359 5.359 11 C 0.033 3.967 12 H 0.094 0.906 13 C -0.078 4.078 14 N -0.230 5.230 15 C -0.085 4.085 16 C 0.223 3.777 17 O -0.503 6.503 18 N -0.210 5.210 19 C -0.462 4.462 20 H 0.094 0.906 21 C -0.213 4.213 22 N -0.560 5.560 23 Si 0.816 3.184 24 H -0.198 1.198 25 H -0.192 1.192 26 H -0.197 1.197 27 C -0.092 4.092 28 C -0.104 4.104 29 H 0.125 0.875 30 C -0.194 4.194 31 H 0.113 0.887 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.074 0.926 37 H 0.087 0.913 38 H 0.078 0.922 39 H 0.137 0.863 40 H 0.128 0.872 41 H 0.254 0.746 42 H 0.083 0.917 43 H 0.026 0.974 44 H 0.083 0.917 45 H 0.135 0.865 46 H 0.230 0.770 47 H 0.088 0.912 48 H 0.072 0.928 49 H 0.128 0.872 50 H 0.080 0.920 51 H 0.101 0.899 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -15.096 -19.186 7.922 25.666 hybrid contribution 1.060 1.243 0.239 1.651 sum -14.036 -17.943 8.161 24.198 Atomic orbital electron populations 1.22960 0.79860 1.03663 1.00778 1.87903 1.21073 1.28149 1.95221 1.22150 0.94059 0.84834 0.95925 0.90504 1.22265 1.02668 1.01827 0.96439 1.21408 0.96363 1.02430 0.93640 1.21634 0.93323 1.06188 0.95531 1.21437 0.92271 0.74665 0.82250 1.90693 1.38394 1.50721 1.67328 1.45957 1.09737 1.71026 1.09173 1.21885 0.86465 0.94081 0.94263 0.90605 1.23074 0.99389 0.97264 0.88086 1.64683 1.42586 1.05577 1.10166 1.22024 0.94482 0.89901 1.02105 1.20807 0.84200 0.87832 0.84867 1.90484 1.34224 1.84354 1.41200 1.41914 1.27174 1.07938 1.43957 1.19625 1.12917 0.85818 1.27858 0.90552 1.26054 0.94932 1.03641 0.96694 1.69672 1.15936 1.35565 1.34860 0.84934 0.78505 0.76790 0.78140 1.19818 1.19202 1.19742 1.23543 0.98747 0.85769 1.01182 1.22321 1.01838 0.94547 0.91696 0.87523 1.21746 1.00464 0.94231 1.02954 0.88702 0.93561 0.92930 0.91343 0.91172 0.92601 0.91269 0.92163 0.86258 0.87171 0.74636 0.91689 0.97395 0.91693 0.86463 0.76995 0.91240 0.92814 0.87193 0.91971 0.89860 0.93033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 10.82 113.37 1.23 1.48 16 2 O -0.40 -7.00 9.88 -148.98 -1.47 -8.47 16 3 C 0.09 1.46 2.72 30.60 0.08 1.54 16 4 H 0.08 1.05 7.79 -2.39 -0.02 1.03 16 5 C -0.17 -2.72 9.53 71.98 0.69 -2.04 16 6 C -0.10 -2.15 4.21 30.60 0.13 -2.02 16 7 C -0.13 -2.44 5.60 29.85 0.17 -2.27 16 8 C 0.51 14.00 7.83 87.66 0.69 14.69 16 9 O -0.59 -22.36 15.66 -3.05 -0.05 -22.41 16 10 N -0.71 -16.81 5.02 -438.37 -2.20 -19.00 16 11 C 0.14 3.82 2.89 45.87 0.13 3.95 16 12 H 0.08 2.34 7.31 -2.38 -0.02 2.32 16 13 C 0.05 1.91 4.87 86.40 0.42 2.33 16 14 N -0.51 -16.71 5.27 -886.98 -4.67 -21.39 16 15 C 0.05 1.68 5.48 85.56 0.47 2.15 16 16 C 0.44 21.66 7.36 87.66 0.64 22.31 16 17 O -0.62 -35.20 13.37 -3.08 -0.04 -35.24 16 18 N -0.57 -30.49 5.29 -306.99 -1.62 -32.11 16 19 C -0.33 -19.49 9.68 84.04 0.81 -18.67 16 20 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 21 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 22 N -0.92 -50.65 13.05 21.66 0.28 -50.36 16 23 Si 0.99 44.07 29.55 68.60 2.03 46.10 16 24 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 25 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 26 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 27 C 0.03 0.77 6.00 86.65 0.52 1.29 16 28 C -0.08 -1.61 3.37 -9.59 -0.03 -1.64 16 29 H 0.11 1.67 7.74 -2.39 -0.02 1.66 16 30 C -0.14 -1.97 9.16 71.99 0.66 -1.31 16 31 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.05 0.43 7.87 -2.39 -0.02 0.41 16 33 H 0.05 0.45 8.09 -2.39 -0.02 0.44 16 34 H 0.07 0.88 7.87 -2.39 -0.02 0.86 16 35 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 37 H 0.07 1.69 8.10 -2.39 -0.02 1.67 16 38 H 0.06 1.50 8.10 -2.39 -0.02 1.48 16 39 H 0.12 1.79 7.82 -2.39 -0.02 1.77 16 40 H 0.11 1.72 8.14 -2.38 -0.02 1.70 16 41 H 0.42 6.98 8.36 -92.71 -0.78 6.20 16 42 H 0.06 2.95 6.53 -2.39 -0.02 2.93 16 43 H 0.01 0.33 7.60 -2.38 -0.02 0.31 16 44 H 0.07 2.16 7.89 -2.39 -0.02 2.15 16 45 H 0.12 3.66 8.14 -2.39 -0.02 3.64 16 46 H 0.40 19.98 7.90 -92.71 -0.73 19.25 16 47 H 0.28 14.30 8.31 -92.71 -0.77 13.53 16 48 H 0.05 1.15 7.73 -2.39 -0.02 1.13 16 49 H 0.11 1.94 8.14 -2.38 -0.02 1.92 16 50 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 51 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 52 H 0.05 0.82 8.10 -2.39 -0.02 0.80 16 Total: -1.00 -78.63 418.81 -1.27 -79.90 By element: Atomic # 1 Polarization: 42.04 SS G_CDS: -0.59 Total: 41.45 kcal Atomic # 6 Polarization: 14.46 SS G_CDS: 7.07 Total: 21.53 kcal Atomic # 7 Polarization: -114.65 SS G_CDS: -8.21 Total: -122.86 kcal Atomic # 8 Polarization: -64.56 SS G_CDS: -1.56 Total: -66.12 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -78.63 -1.27 -79.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206894983.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.483 kcal (2) G-P(sol) polarization free energy of solvation -78.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds