Wall clock time and date at job start Wed Apr 1 2020 01:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42901 * 113.99638 * 2 1 4 4 H 1.08999 * 109.47197 * 30.00097 * 3 2 1 5 5 C 1.52999 * 109.47263 * 269.99838 * 3 2 1 6 6 C 1.53002 * 109.46827 * 149.99832 * 3 2 1 7 7 C 1.53001 * 109.47383 * 294.99989 * 6 3 2 8 8 C 1.50694 * 109.47187 * 180.02562 * 7 6 3 9 9 O 1.21276 * 120.00321 * 0.02562 * 8 7 6 10 10 N 1.34782 * 119.99824 * 179.97438 * 8 7 6 11 11 C 1.46495 * 119.99843 * 179.97438 * 10 8 7 12 12 H 1.09004 * 110.29293 * 32.87434 * 11 10 8 13 13 C 1.54382 * 110.41301 * 270.68894 * 11 10 8 14 14 N 1.48561 * 104.59608 * 264.91372 * 13 11 10 15 15 C 1.46893 * 111.00239 * 200.95711 * 14 13 11 16 16 C 1.50697 * 109.47150 * 290.12543 * 15 14 13 17 17 O 1.21289 * 120.00128 * 359.97438 * 16 15 14 18 18 N 1.34778 * 120.00250 * 179.97438 * 16 15 14 19 19 C 1.37095 * 120.00368 * 180.02562 * 18 16 15 20 20 H 1.08001 * 119.99829 * 359.97438 * 19 18 16 21 21 C 1.38953 * 120.00044 * 180.02562 * 19 18 16 22 22 N 1.31406 * 120.00148 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99849 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47188 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.46982 * 119.99863 * 23 21 19 26 26 H 1.48502 * 109.46773 * 239.99819 * 23 21 19 27 27 C 1.48558 * 104.22085 * 320.51572 * 14 13 11 28 28 C 1.54259 * 110.32568 * 154.99845 * 11 10 8 29 29 H 1.09006 * 110.32084 * 0.02562 * 28 11 10 30 30 C 1.52997 * 110.32840 * 237.89566 * 28 11 10 31 31 H 1.09000 * 109.47500 * 299.99950 * 1 2 3 32 32 H 1.09002 * 109.47466 * 59.99927 * 1 2 3 33 33 H 1.09002 * 109.47027 * 179.97438 * 1 2 3 34 34 H 1.09003 * 109.46757 * 300.00265 * 5 3 2 35 35 H 1.08996 * 109.47443 * 60.00291 * 5 3 2 36 36 H 1.08998 * 109.47018 * 180.02562 * 5 3 2 37 37 H 1.08998 * 109.47184 * 174.99652 * 6 3 2 38 38 H 1.09002 * 109.46919 * 54.99807 * 6 3 2 39 39 H 1.09004 * 109.46812 * 59.99699 * 7 6 3 40 40 H 1.08996 * 109.46739 * 300.00200 * 7 6 3 41 41 H 0.96996 * 119.99812 * 359.97438 * 10 8 7 42 42 H 1.08998 * 110.41088 * 23.68932 * 13 11 10 43 43 H 1.08997 * 110.41149 * 146.01499 * 13 11 10 44 44 H 1.09004 * 109.47263 * 50.12835 * 15 14 13 45 45 H 1.08997 * 109.47161 * 170.12270 * 15 14 13 46 46 H 0.97004 * 119.99487 * 359.97438 * 18 16 15 47 47 H 0.97002 * 120.00285 * 180.02562 * 22 21 19 48 48 H 1.09000 * 110.41322 * 280.70622 * 27 14 13 49 49 H 1.09004 * 110.41245 * 158.25979 * 27 14 13 50 50 H 1.09002 * 109.47153 * 59.99730 * 30 28 11 51 51 H 1.09001 * 109.46832 * 299.99921 * 30 28 11 52 52 H 1.09004 * 109.47261 * 179.97438 * 30 28 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3448 1.9994 0.5138 5 6 2.2176 1.7714 -1.4425 6 6 3.3588 1.2633 0.7213 7 6 3.1382 0.9185 2.1955 8 6 4.4665 0.8775 2.9061 9 8 5.4889 1.1025 2.2938 10 7 4.5181 0.5919 4.2222 11 6 5.8095 0.5516 4.9128 12 1 6.4949 1.2776 4.4756 13 6 6.4142 -0.8671 4.8415 14 7 5.9983 -1.5157 6.1117 15 6 6.8710 -2.6528 6.4326 16 6 6.6181 -3.7717 5.4553 17 8 5.7917 -3.6354 4.5780 18 7 7.3102 -4.9238 5.5559 19 6 7.0805 -5.9415 4.6665 20 1 6.3446 -5.8201 3.8854 21 6 7.7936 -7.1295 4.7707 22 7 8.6879 -7.2777 5.7221 23 14 7.4811 -8.5158 3.5583 24 1 6.4329 -8.1011 2.5916 25 1 8.7355 -8.8255 2.8265 26 1 7.0260 -9.7231 4.2936 27 6 6.1277 -0.4413 7.1295 28 6 5.6211 0.8317 6.4180 29 1 4.5677 0.9988 6.6431 30 6 6.4532 2.0439 6.8413 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 2.8829 1.0775 -1.9563 35 1 1.2568 1.8015 -1.9564 36 1 2.6613 2.7670 -1.4424 37 1 3.8426 2.2370 0.6444 38 1 3.9930 0.5052 0.2618 39 1 2.6544 -0.0553 2.2724 40 1 2.5040 1.6765 2.6550 41 1 3.7003 0.4130 4.7121 42 1 6.0099 -1.4101 3.9873 43 1 7.5010 -0.8143 4.7776 44 1 7.9134 -2.3409 6.3661 45 1 6.6593 -2.9992 7.4441 46 1 7.9714 -5.0326 6.2573 47 1 9.1860 -8.1069 5.7946 48 1 7.1699 -0.3219 7.4258 49 1 5.5077 -0.6637 7.9980 50 1 6.1353 2.9188 6.2741 51 1 7.5073 1.8472 6.6453 52 1 6.3096 2.2295 7.9057 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206894984.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:27:47 Heat of formation + Delta-G solvation = -125.550060 kcal Electronic energy + Delta-G solvation = -30358.608031 eV Core-core repulsion = 26164.775602 eV Total energy + Delta-G solvation = -4193.832429 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.17971 -39.00633 -38.38017 -37.58508 -34.37318 -33.84334 -33.75950 -32.62028 -31.17357 -30.55571 -28.70703 -27.37608 -26.90880 -25.44533 -24.66423 -23.59094 -21.57355 -21.11463 -20.45251 -19.85544 -19.03006 -17.79330 -17.17559 -16.93222 -16.66222 -15.76551 -15.57218 -15.39797 -15.17714 -15.10763 -14.95794 -14.47793 -14.06769 -13.86352 -13.70758 -13.50384 -13.18591 -13.11923 -13.00698 -12.77057 -12.54911 -12.42104 -12.28641 -12.05827 -11.79883 -11.69259 -11.52779 -11.46660 -11.34023 -11.21290 -11.18357 -10.98628 -10.87860 -10.79339 -10.76516 -10.30262 -10.17874 -9.88380 -9.65782 -9.45600 -8.91296 -8.46235 -7.99023 -7.89740 -6.37294 -3.77651 2.76325 3.19883 3.25321 3.30077 3.37981 3.57899 3.95618 4.07119 4.30118 4.45271 4.54479 4.64937 4.66655 4.82654 4.93918 5.02807 5.07032 5.09694 5.11167 5.13653 5.29089 5.32473 5.33549 5.37820 5.39983 5.46743 5.48726 5.52546 5.56315 5.67453 5.68059 5.78870 5.82367 5.84723 5.91091 5.92167 5.93975 6.01393 6.11168 6.15564 6.31898 6.45048 6.67292 7.01528 7.13512 7.23280 7.59977 7.61844 8.11367 8.34970 8.66944 9.23321 9.59554 10.11805 10.80751 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.007818 B = 0.002841 C = 0.002191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3580.724933 B = 9853.878299 C =12778.525872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.381 6.381 3 C 0.084 3.916 4 H 0.059 0.941 5 C -0.175 4.175 6 C -0.101 4.101 7 C -0.139 4.139 8 C 0.515 3.485 9 O -0.545 6.545 10 N -0.714 5.714 11 C 0.145 3.855 12 H 0.094 0.906 13 C 0.028 3.972 14 N -0.484 5.484 15 C 0.034 3.966 16 C 0.445 3.555 17 O -0.575 6.575 18 N -0.567 5.567 19 C -0.296 4.296 20 H 0.103 0.897 21 C 0.021 3.979 22 N -0.903 5.903 23 Si 0.928 3.072 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.282 1.282 27 C 0.032 3.968 28 C -0.101 4.101 29 H 0.085 0.915 30 C -0.142 4.142 31 H 0.040 0.960 32 H 0.038 0.962 33 H 0.085 0.915 34 H 0.066 0.934 35 H 0.055 0.945 36 H 0.066 0.934 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.102 0.898 40 H 0.086 0.914 41 H 0.401 0.599 42 H 0.104 0.896 43 H 0.044 0.956 44 H 0.050 0.950 45 H 0.089 0.911 46 H 0.391 0.609 47 H 0.270 0.730 48 H 0.045 0.955 49 H 0.082 0.918 50 H 0.057 0.943 51 H 0.057 0.943 52 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.627 21.514 -1.386 24.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.300 6.300 3 C 0.026 3.974 4 H 0.077 0.923 5 C -0.232 4.232 6 C -0.139 4.139 7 C -0.179 4.179 8 C 0.302 3.698 9 O -0.423 6.423 10 N -0.365 5.365 11 C 0.039 3.961 12 H 0.112 0.888 13 C -0.101 4.101 14 N -0.207 5.207 15 C -0.098 4.098 16 C 0.230 3.770 17 O -0.459 6.459 18 N -0.204 5.204 19 C -0.425 4.425 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.545 5.545 23 Si 0.755 3.245 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.208 1.208 27 C -0.097 4.097 28 C -0.120 4.120 29 H 0.103 0.897 30 C -0.200 4.200 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.104 0.896 34 H 0.085 0.915 35 H 0.074 0.926 36 H 0.085 0.915 37 H 0.100 0.900 38 H 0.100 0.900 39 H 0.120 0.880 40 H 0.105 0.895 41 H 0.236 0.764 42 H 0.122 0.878 43 H 0.062 0.938 44 H 0.068 0.932 45 H 0.107 0.893 46 H 0.224 0.776 47 H 0.080 0.920 48 H 0.064 0.936 49 H 0.100 0.900 50 H 0.076 0.924 51 H 0.077 0.923 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.755 21.207 -2.415 24.367 hybrid contribution 0.612 -0.595 0.309 0.908 sum -11.143 20.612 -2.106 23.526 Atomic orbital electron populations 1.22777 0.81405 1.02820 0.99614 1.87998 1.19326 1.27660 1.95020 1.22201 0.94909 0.84680 0.95617 0.92265 1.22270 1.02241 1.01837 0.96872 1.21456 0.95587 1.03697 0.93136 1.21631 0.95265 1.04713 0.96257 1.20684 0.91508 0.75739 0.81912 1.90690 1.36379 1.49401 1.65783 1.46007 1.09516 1.71416 1.09596 1.21788 0.85621 0.97351 0.91332 0.88801 1.23592 0.97825 0.93488 0.95172 1.65167 1.49277 1.04648 1.01656 1.22060 0.95005 0.92618 1.00078 1.19705 0.85372 0.84042 0.87845 1.90513 1.36644 1.81472 1.37235 1.41864 1.36040 1.12598 1.29877 1.19743 1.20849 0.92171 1.09756 0.87911 1.25247 0.96108 0.98850 0.97823 1.69619 1.24837 1.27501 1.32567 0.85814 0.78302 0.80324 0.80011 1.19201 1.20788 1.20788 1.23269 0.99782 0.90574 0.96061 1.22165 1.00960 0.95090 0.93815 0.89687 1.21834 0.99913 0.96901 1.01363 0.94121 0.94357 0.89612 0.91487 0.92624 0.91546 0.89988 0.89980 0.87964 0.89515 0.76407 0.87818 0.93802 0.93249 0.89273 0.77563 0.92000 0.93631 0.89974 0.92393 0.92349 0.92150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.82 101.05 1.09 1.33 16 2 O -0.38 -4.20 9.88 -35.23 -0.35 -4.54 16 3 C 0.08 0.76 2.72 -26.73 -0.07 0.69 16 4 H 0.06 0.43 7.79 -51.93 -0.40 0.03 16 5 C -0.17 -1.41 9.53 37.16 0.35 -1.06 16 6 C -0.10 -1.08 4.21 -26.73 -0.11 -1.19 16 7 C -0.14 -1.45 5.60 -27.89 -0.16 -1.60 16 8 C 0.51 7.07 7.83 -10.99 -0.09 6.98 16 9 O -0.55 -9.53 15.63 5.56 0.09 -9.45 16 10 N -0.71 -8.87 5.07 -52.47 -0.27 -9.14 16 11 C 0.14 1.92 3.05 -66.55 -0.20 1.71 16 12 H 0.09 1.30 7.12 -51.93 -0.37 0.93 16 13 C 0.03 0.48 5.52 -2.18 -0.01 0.47 16 14 N -0.48 -8.06 5.06 -231.41 -1.17 -9.23 16 15 C 0.03 0.63 5.30 -4.98 -0.03 0.60 16 16 C 0.45 10.80 7.58 -10.99 -0.08 10.72 16 17 O -0.58 -15.94 14.42 5.55 0.08 -15.86 16 18 N -0.57 -14.73 5.29 -10.96 -0.06 -14.79 16 19 C -0.30 -8.44 9.68 -14.93 -0.14 -8.58 16 20 H 0.10 3.10 7.16 -52.49 -0.38 2.72 16 21 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 22 N -0.90 -25.06 13.05 55.50 0.72 -24.34 16 23 Si 0.93 21.57 29.55 -169.99 -5.02 16.55 16 24 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 25 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 26 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 27 C 0.03 0.38 6.03 -2.18 -0.01 0.37 16 28 C -0.10 -1.04 3.42 -89.24 -0.30 -1.35 16 29 H 0.08 0.78 7.67 -51.93 -0.40 0.39 16 30 C -0.14 -1.20 8.92 37.16 0.33 -0.87 16 31 H 0.04 0.26 8.08 -51.93 -0.42 -0.16 16 32 H 0.04 0.25 7.87 -51.93 -0.41 -0.16 16 33 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.05 0.40 7.87 -51.93 -0.41 -0.01 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.08 0.83 8.10 -51.93 -0.42 0.41 16 38 H 0.08 1.08 8.10 -51.93 -0.42 0.66 16 39 H 0.10 1.13 7.82 -51.93 -0.41 0.72 16 40 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.40 4.12 8.36 -40.82 -0.34 3.78 16 42 H 0.10 2.23 6.83 -51.93 -0.35 1.88 16 43 H 0.04 0.75 7.83 -51.93 -0.41 0.35 16 44 H 0.05 0.84 7.88 -51.93 -0.41 0.43 16 45 H 0.09 1.46 8.13 -51.93 -0.42 1.04 16 46 H 0.39 9.71 7.90 -40.82 -0.32 9.39 16 47 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 48 H 0.05 0.52 7.68 -51.93 -0.40 0.12 16 49 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 50 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 51 H 0.06 0.51 8.10 -51.93 -0.42 0.09 16 52 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 420.56 15.07 6.34 6.34 Total: -1.00 -34.78 420.56 -8.37 -43.15 By element: Atomic # 1 Polarization: 21.82 SS G_CDS: -9.20 Total: 12.62 kcal Atomic # 6 Polarization: 8.23 SS G_CDS: 0.47 Total: 8.69 kcal Atomic # 7 Polarization: -56.72 SS G_CDS: -0.77 Total: -57.49 kcal Atomic # 8 Polarization: -29.67 SS G_CDS: -0.18 Total: -29.85 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 6.34 Total: 6.34 kcal Total: -34.78 -8.37 -43.15 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206894984.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.398 kcal (2) G-P(sol) polarization free energy of solvation -34.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds