Wall clock time and date at job start Wed Apr 1 2020 01:27:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42901 * 113.99638 * 2 1 4 4 H 1.08999 * 109.47197 * 30.00097 * 3 2 1 5 5 C 1.52999 * 109.47263 * 269.99838 * 3 2 1 6 6 C 1.53002 * 109.46827 * 149.99832 * 3 2 1 7 7 C 1.53001 * 109.47383 * 294.99989 * 6 3 2 8 8 C 1.50694 * 109.47187 * 180.02562 * 7 6 3 9 9 O 1.21276 * 120.00321 * 0.02562 * 8 7 6 10 10 N 1.34782 * 119.99824 * 179.97438 * 8 7 6 11 11 C 1.46495 * 119.99843 * 179.97438 * 10 8 7 12 12 H 1.09004 * 110.29293 * 32.87434 * 11 10 8 13 13 C 1.54382 * 110.41301 * 270.68894 * 11 10 8 14 14 N 1.48561 * 104.59608 * 264.91372 * 13 11 10 15 15 C 1.46893 * 111.00239 * 200.95711 * 14 13 11 16 16 C 1.50697 * 109.47150 * 290.12543 * 15 14 13 17 17 O 1.21289 * 120.00128 * 359.97438 * 16 15 14 18 18 N 1.34778 * 120.00250 * 179.97438 * 16 15 14 19 19 C 1.37095 * 120.00368 * 180.02562 * 18 16 15 20 20 H 1.08001 * 119.99829 * 359.97438 * 19 18 16 21 21 C 1.38953 * 120.00044 * 180.02562 * 19 18 16 22 22 N 1.31406 * 120.00148 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99849 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47188 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.46982 * 119.99863 * 23 21 19 26 26 H 1.48502 * 109.46773 * 239.99819 * 23 21 19 27 27 C 1.48558 * 104.22085 * 320.51572 * 14 13 11 28 28 C 1.54259 * 110.32568 * 154.99845 * 11 10 8 29 29 H 1.09006 * 110.32084 * 0.02562 * 28 11 10 30 30 C 1.52997 * 110.32840 * 237.89566 * 28 11 10 31 31 H 1.09000 * 109.47500 * 299.99950 * 1 2 3 32 32 H 1.09002 * 109.47466 * 59.99927 * 1 2 3 33 33 H 1.09002 * 109.47027 * 179.97438 * 1 2 3 34 34 H 1.09003 * 109.46757 * 300.00265 * 5 3 2 35 35 H 1.08996 * 109.47443 * 60.00291 * 5 3 2 36 36 H 1.08998 * 109.47018 * 180.02562 * 5 3 2 37 37 H 1.08998 * 109.47184 * 174.99652 * 6 3 2 38 38 H 1.09002 * 109.46919 * 54.99807 * 6 3 2 39 39 H 1.09004 * 109.46812 * 59.99699 * 7 6 3 40 40 H 1.08996 * 109.46739 * 300.00200 * 7 6 3 41 41 H 0.96996 * 119.99812 * 359.97438 * 10 8 7 42 42 H 1.08998 * 110.41088 * 23.68932 * 13 11 10 43 43 H 1.08997 * 110.41149 * 146.01499 * 13 11 10 44 44 H 1.09004 * 109.47263 * 50.12835 * 15 14 13 45 45 H 1.08997 * 109.47161 * 170.12270 * 15 14 13 46 46 H 0.97004 * 119.99487 * 359.97438 * 18 16 15 47 47 H 0.97002 * 120.00285 * 180.02562 * 22 21 19 48 48 H 1.09000 * 110.41322 * 280.70622 * 27 14 13 49 49 H 1.09004 * 110.41245 * 158.25979 * 27 14 13 50 50 H 1.09002 * 109.47153 * 59.99730 * 30 28 11 51 51 H 1.09001 * 109.46832 * 299.99921 * 30 28 11 52 52 H 1.09004 * 109.47261 * 179.97438 * 30 28 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3448 1.9994 0.5138 5 6 2.2176 1.7714 -1.4425 6 6 3.3588 1.2633 0.7213 7 6 3.1382 0.9185 2.1955 8 6 4.4665 0.8775 2.9061 9 8 5.4889 1.1025 2.2938 10 7 4.5181 0.5919 4.2222 11 6 5.8095 0.5516 4.9128 12 1 6.4949 1.2776 4.4756 13 6 6.4142 -0.8671 4.8415 14 7 5.9983 -1.5157 6.1117 15 6 6.8710 -2.6528 6.4326 16 6 6.6181 -3.7717 5.4553 17 8 5.7917 -3.6354 4.5780 18 7 7.3102 -4.9238 5.5559 19 6 7.0805 -5.9415 4.6665 20 1 6.3446 -5.8201 3.8854 21 6 7.7936 -7.1295 4.7707 22 7 8.6879 -7.2777 5.7221 23 14 7.4811 -8.5158 3.5583 24 1 6.4329 -8.1011 2.5916 25 1 8.7355 -8.8255 2.8265 26 1 7.0260 -9.7231 4.2936 27 6 6.1277 -0.4413 7.1295 28 6 5.6211 0.8317 6.4180 29 1 4.5677 0.9988 6.6431 30 6 6.4532 2.0439 6.8413 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 2.8829 1.0775 -1.9563 35 1 1.2568 1.8015 -1.9564 36 1 2.6613 2.7670 -1.4424 37 1 3.8426 2.2370 0.6444 38 1 3.9930 0.5052 0.2618 39 1 2.6544 -0.0553 2.2724 40 1 2.5040 1.6765 2.6550 41 1 3.7003 0.4130 4.7121 42 1 6.0099 -1.4101 3.9873 43 1 7.5010 -0.8143 4.7776 44 1 7.9134 -2.3409 6.3661 45 1 6.6593 -2.9992 7.4441 46 1 7.9714 -5.0326 6.2573 47 1 9.1860 -8.1069 5.7946 48 1 7.1699 -0.3219 7.4258 49 1 5.5077 -0.6637 7.9980 50 1 6.1353 2.9188 6.2741 51 1 7.5073 1.8472 6.6453 52 1 6.3096 2.2295 7.9057 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206894984.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:27:46 Heat of formation + Delta-G solvation = -153.021458 kcal Electronic energy + Delta-G solvation = -30359.799280 eV Core-core repulsion = 26164.775602 eV Total energy + Delta-G solvation = -4195.023678 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.32889 -40.34257 -39.45193 -38.99871 -36.05982 -35.36824 -34.69218 -33.68666 -33.25107 -31.36478 -29.95093 -28.67138 -27.54299 -26.83896 -25.97379 -24.76759 -22.71716 -21.94959 -21.63681 -20.92848 -20.77502 -19.86409 -18.12297 -17.92917 -17.72583 -17.42400 -16.79435 -16.53858 -16.44558 -16.15822 -16.00336 -15.88788 -15.57476 -15.34579 -15.04562 -14.56959 -14.44075 -14.14167 -13.92378 -13.80530 -13.57644 -13.39199 -13.37050 -13.24936 -13.19213 -13.00391 -12.94523 -12.52328 -12.46740 -12.42529 -12.27689 -12.22156 -12.14200 -12.05459 -11.84236 -11.69290 -11.53435 -11.50456 -10.86783 -10.50761 -10.34229 -10.04835 -10.00127 -9.40310 -8.48643 -5.97088 1.34124 1.38883 1.53437 1.66440 2.04067 2.26114 2.26947 2.81350 2.91329 3.17526 3.32834 3.56531 3.65471 3.75247 3.81830 4.07429 4.10980 4.21459 4.23770 4.28858 4.34188 4.34954 4.44565 4.49384 4.51337 4.51963 4.59065 4.63284 4.64671 4.73009 4.79593 4.81139 4.85570 4.90371 4.96313 4.98909 5.07152 5.11818 5.20728 5.22812 5.32531 5.36279 5.39015 5.57209 5.79943 5.90936 6.07299 6.36332 6.59073 6.60504 7.11687 7.30272 7.54698 8.11522 8.69219 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.007818 B = 0.002841 C = 0.002191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3580.724933 B = 9853.878299 C =12778.525872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.413 6.413 3 C 0.085 3.915 4 H 0.087 0.913 5 C -0.174 4.174 6 C -0.100 4.100 7 C -0.129 4.129 8 C 0.507 3.493 9 O -0.590 6.590 10 N -0.706 5.706 11 C 0.149 3.851 12 H 0.087 0.913 13 C 0.030 3.970 14 N -0.500 5.500 15 C 0.046 3.954 16 C 0.440 3.560 17 O -0.616 6.616 18 N -0.576 5.576 19 C -0.331 4.331 20 H 0.075 0.925 21 C -0.013 4.013 22 N -0.920 5.920 23 Si 0.991 3.009 24 H -0.276 1.276 25 H -0.270 1.270 26 H -0.267 1.267 27 C 0.032 3.968 28 C -0.087 4.087 29 H 0.105 0.895 30 C -0.137 4.137 31 H 0.057 0.943 32 H 0.051 0.949 33 H 0.084 0.916 34 H 0.047 0.953 35 H 0.067 0.933 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.044 0.956 39 H 0.096 0.904 40 H 0.127 0.873 41 H 0.414 0.586 42 H 0.050 0.950 43 H 0.034 0.966 44 H 0.066 0.934 45 H 0.116 0.884 46 H 0.396 0.604 47 H 0.278 0.722 48 H 0.058 0.942 49 H 0.102 0.898 50 H 0.063 0.937 51 H 0.052 0.948 52 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.825 23.066 0.377 26.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.333 6.333 3 C 0.028 3.972 4 H 0.105 0.895 5 C -0.231 4.231 6 C -0.138 4.138 7 C -0.169 4.169 8 C 0.295 3.705 9 O -0.471 6.471 10 N -0.358 5.358 11 C 0.043 3.957 12 H 0.105 0.895 13 C -0.099 4.099 14 N -0.224 5.224 15 C -0.085 4.085 16 C 0.227 3.773 17 O -0.501 6.501 18 N -0.214 5.214 19 C -0.461 4.461 20 H 0.093 0.907 21 C -0.212 4.212 22 N -0.562 5.562 23 Si 0.815 3.185 24 H -0.201 1.201 25 H -0.196 1.196 26 H -0.192 1.192 27 C -0.095 4.095 28 C -0.107 4.107 29 H 0.123 0.877 30 C -0.195 4.195 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.103 0.897 34 H 0.066 0.934 35 H 0.086 0.914 36 H 0.098 0.902 37 H 0.105 0.895 38 H 0.063 0.937 39 H 0.114 0.886 40 H 0.145 0.855 41 H 0.251 0.749 42 H 0.069 0.931 43 H 0.053 0.947 44 H 0.084 0.916 45 H 0.134 0.866 46 H 0.230 0.770 47 H 0.087 0.913 48 H 0.077 0.923 49 H 0.121 0.879 50 H 0.082 0.918 51 H 0.071 0.929 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -12.966 22.766 -0.599 26.206 hybrid contribution 0.983 -1.077 -0.236 1.477 sum -11.983 21.689 -0.834 24.793 Atomic orbital electron populations 1.22941 0.79851 1.03336 1.01030 1.87962 1.21208 1.28926 1.95240 1.22246 0.94166 0.84640 0.96146 0.89495 1.22268 1.02559 1.02008 0.96276 1.21429 0.96310 1.02641 0.93379 1.21633 0.93710 1.05633 0.95914 1.21348 0.92201 0.74752 0.82159 1.90665 1.38162 1.51531 1.66717 1.45985 1.09835 1.70505 1.09425 1.21726 0.85728 0.94456 0.93764 0.89540 1.23417 0.97220 0.95325 0.93972 1.65096 1.48987 1.05648 1.02667 1.21939 0.96344 0.91165 0.99098 1.20826 0.83840 0.84650 0.87994 1.90490 1.38197 1.82303 1.39158 1.41932 1.36660 1.12947 1.29835 1.19649 1.21757 0.94043 1.10645 0.90721 1.26016 0.95425 1.00456 0.99345 1.69671 1.24861 1.28391 1.33239 0.84898 0.78255 0.77536 0.77806 1.20078 1.19561 1.19240 1.23432 1.01251 0.89478 0.95386 1.22157 1.02603 0.95197 0.90700 0.87678 1.21810 0.99099 0.95859 1.02741 0.92472 0.93087 0.89697 0.93416 0.91415 0.90171 0.89484 0.93736 0.88606 0.85471 0.74939 0.93133 0.94738 0.91596 0.86591 0.77025 0.91275 0.92342 0.87943 0.91817 0.92893 0.90013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 10.82 113.37 1.23 1.58 16 2 O -0.41 -9.01 9.88 -148.98 -1.47 -10.48 16 3 C 0.09 1.47 2.72 30.59 0.08 1.56 16 4 H 0.09 1.03 7.79 -2.39 -0.02 1.01 16 5 C -0.17 -2.70 9.53 71.98 0.69 -2.01 16 6 C -0.10 -2.18 4.21 30.60 0.13 -2.05 16 7 C -0.13 -2.64 5.60 29.85 0.17 -2.47 16 8 C 0.51 14.23 7.83 87.65 0.69 14.92 16 9 O -0.59 -21.74 15.63 -3.02 -0.05 -21.78 16 10 N -0.71 -17.32 5.07 -438.30 -2.22 -19.54 16 11 C 0.15 3.91 3.05 45.89 0.14 4.05 16 12 H 0.09 2.42 7.12 -2.38 -0.02 2.40 16 13 C 0.03 1.07 5.52 86.45 0.48 1.54 16 14 N -0.50 -16.32 5.06 -886.05 -4.48 -20.81 16 15 C 0.05 1.66 5.30 85.56 0.45 2.11 16 16 C 0.44 22.00 7.58 87.66 0.66 22.66 16 17 O -0.62 -35.89 14.42 -3.06 -0.04 -35.93 16 18 N -0.58 -30.84 5.29 -306.99 -1.62 -32.46 16 19 C -0.33 -19.59 9.68 84.04 0.81 -18.78 16 20 H 0.07 4.76 7.16 -2.91 -0.02 4.73 16 21 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 22 N -0.92 -50.94 13.05 21.66 0.28 -50.66 16 23 Si 0.99 44.54 29.55 68.60 2.03 46.56 16 24 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 25 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 26 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 27 C 0.03 0.68 6.03 86.45 0.52 1.20 16 28 C -0.09 -1.57 3.42 -9.90 -0.03 -1.60 16 29 H 0.11 1.52 7.67 -2.38 -0.02 1.50 16 30 C -0.14 -1.86 8.92 71.98 0.64 -1.22 16 31 H 0.06 0.61 8.08 -2.39 -0.02 0.59 16 32 H 0.05 0.58 7.87 -2.39 -0.02 0.56 16 33 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.07 0.88 7.87 -2.39 -0.02 0.86 16 36 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.09 1.77 8.10 -2.39 -0.02 1.75 16 38 H 0.04 1.29 8.10 -2.39 -0.02 1.27 16 39 H 0.10 2.13 7.82 -2.38 -0.02 2.11 16 40 H 0.13 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.41 7.92 8.36 -92.71 -0.77 7.14 16 42 H 0.05 2.33 6.83 -2.39 -0.02 2.32 16 43 H 0.03 1.25 7.83 -2.39 -0.02 1.23 16 44 H 0.07 2.17 7.88 -2.38 -0.02 2.15 16 45 H 0.12 3.56 8.13 -2.39 -0.02 3.55 16 46 H 0.40 20.01 7.90 -92.71 -0.73 19.28 16 47 H 0.28 14.31 8.31 -92.71 -0.77 13.54 16 48 H 0.06 1.14 7.68 -2.39 -0.02 1.12 16 49 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 50 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 51 H 0.05 0.79 8.10 -2.39 -0.02 0.77 16 52 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 Total: -1.00 -80.47 420.56 -1.05 -81.52 By element: Atomic # 1 Polarization: 42.94 SS G_CDS: -0.59 Total: 42.35 kcal Atomic # 6 Polarization: 14.12 SS G_CDS: 7.12 Total: 21.24 kcal Atomic # 7 Polarization: -115.42 SS G_CDS: -8.05 Total: -123.47 kcal Atomic # 8 Polarization: -66.64 SS G_CDS: -1.56 Total: -68.20 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.56 kcal Total: -80.47 -1.05 -81.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206894984.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.502 kcal (2) G-P(sol) polarization free energy of solvation -80.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds