Wall clock time and date at job start Wed Apr 1 2020 00:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47068 * 2 1 4 4 O 1.42902 * 109.47098 * 120.00128 * 2 1 3 5 5 C 1.42895 * 114.00370 * 149.99756 * 4 2 1 6 6 C 1.52997 * 109.47503 * 179.97438 * 5 4 2 7 7 C 1.50701 * 109.47212 * 180.02562 * 6 5 4 8 8 O 1.21280 * 119.99781 * 0.02562 * 7 6 5 9 9 N 1.34780 * 119.99795 * 179.97438 * 7 6 5 10 10 C 1.46921 * 120.63059 * 359.72315 * 9 7 6 11 11 C 1.53629 * 108.54224 * 126.36706 * 10 9 7 12 12 C 1.53041 * 109.24036 * 54.85265 * 11 10 9 13 13 C 1.53038 * 109.54157 * 298.51402 * 12 11 10 14 14 H 1.09001 * 109.52205 * 301.39995 * 13 12 11 15 15 N 1.46895 * 109.49683 * 181.31827 * 13 12 11 16 16 C 1.46907 * 110.99801 * 155.16054 * 15 13 12 17 17 C 1.50701 * 109.46759 * 179.97438 * 16 15 13 18 18 O 1.21293 * 120.00591 * 0.02562 * 17 16 15 19 19 N 1.34780 * 119.99853 * 180.02562 * 17 16 15 20 20 C 1.37101 * 120.00250 * 180.02562 * 19 17 16 21 21 H 1.07998 * 119.99554 * 359.97438 * 20 19 17 22 22 C 1.38948 * 119.99876 * 179.97438 * 20 19 17 23 23 N 1.31412 * 120.00256 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99595 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.46791 * 90.00267 * 24 22 20 26 26 H 1.48497 * 109.47034 * 210.00097 * 24 22 20 27 27 H 1.48498 * 109.47324 * 330.00620 * 24 22 20 28 28 C 1.46926 * 120.62707 * 180.02562 * 9 7 6 29 29 H 1.08996 * 109.47016 * 299.99660 * 1 2 3 30 30 H 1.09000 * 109.46865 * 59.99909 * 1 2 3 31 31 H 1.08998 * 109.47139 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.46932 * 239.99557 * 2 1 3 33 33 H 1.08997 * 109.46918 * 300.00066 * 3 2 1 34 34 H 1.08996 * 109.46924 * 60.00284 * 3 2 1 35 35 H 1.09000 * 109.46688 * 180.02562 * 3 2 1 36 36 H 1.09002 * 109.46880 * 59.99856 * 5 4 2 37 37 H 1.08998 * 109.47064 * 300.00681 * 5 4 2 38 38 H 1.09002 * 109.47153 * 60.00043 * 6 5 4 39 39 H 1.09001 * 109.46832 * 300.00234 * 6 5 4 40 40 H 1.08998 * 109.58542 * 246.19788 * 10 9 7 41 41 H 1.08999 * 109.58977 * 6.62636 * 10 9 7 42 42 H 1.08999 * 109.63120 * 294.86485 * 11 10 9 43 43 H 1.08993 * 109.46032 * 174.74341 * 11 10 9 44 44 H 1.09004 * 109.46092 * 178.49180 * 12 11 10 45 45 H 1.08996 * 109.45734 * 58.53711 * 12 11 10 46 46 H 1.00896 * 111.00427 * 279.11158 * 15 13 12 47 47 H 1.08990 * 109.47193 * 299.99576 * 16 15 13 48 48 H 1.09001 * 109.47269 * 60.00237 * 16 15 13 49 49 H 0.97001 * 119.99989 * 359.97438 * 19 17 16 50 50 H 0.96998 * 119.99541 * 180.02562 * 23 22 20 51 51 H 1.09003 * 109.58886 * 353.37482 * 28 9 7 52 52 H 1.08997 * 109.58814 * 113.80062 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 1.1668 5 6 3.2659 -1.3246 0.9887 6 6 3.6760 -2.0082 2.2946 7 6 5.0047 -2.6941 2.1069 8 8 5.5684 -2.6409 1.0343 9 7 5.5670 -3.3657 3.1312 10 6 4.8997 -3.4329 4.4384 11 6 4.7719 -4.9085 4.8464 12 6 6.1551 -5.5626 4.8128 13 6 6.7148 -5.5034 3.3897 14 1 6.0336 -6.0138 2.7088 15 7 8.0286 -6.1595 3.3519 16 6 8.3337 -6.6493 2.0009 17 6 9.6862 -7.3141 2.0013 18 8 10.3321 -7.3744 3.0262 19 7 10.1781 -7.8417 0.8628 20 6 11.4082 -8.4470 0.8632 21 1 11.9833 -8.5006 1.7757 22 6 11.9150 -8.9913 -0.3105 23 7 11.2155 -8.9255 -1.4210 24 14 13.5914 -9.8153 -0.3101 25 1 13.4331 -11.2593 -0.0018 26 1 14.2194 -9.6606 -1.6468 27 1 14.4544 -9.1813 0.7187 28 6 6.8622 -4.0389 2.9637 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 3.1300 1.4424 -0.0005 36 1 4.0200 -0.5875 0.7125 37 1 3.1809 -2.0707 0.1986 38 1 2.9221 -2.7452 2.5712 39 1 3.7612 -1.2616 3.0842 40 1 5.4923 -2.8961 5.1792 41 1 3.9085 -2.9852 4.3662 42 1 4.1086 -5.4242 4.1522 43 1 4.3637 -4.9723 5.8550 44 1 6.0725 -6.6029 5.1276 45 1 6.8247 -5.0309 5.4888 46 1 8.7521 -5.5395 3.6837 47 1 7.5747 -7.3693 1.6955 48 1 8.3414 -5.8115 1.3038 49 1 9.6614 -7.7938 0.0432 50 1 11.5692 -9.3059 -2.2402 51 1 7.1663 -3.9912 1.9181 52 1 7.6112 -3.5505 3.5869 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207410789.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:09:06 Heat of formation + Delta-G solvation = -129.997617 kcal Electronic energy + Delta-G solvation = -29675.161620 eV Core-core repulsion = 25481.136331 eV Total energy + Delta-G solvation = -4194.025289 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.56906 -38.84854 -38.36666 -37.64345 -35.16313 -33.86833 -33.68610 -32.54080 -31.38659 -31.18565 -29.70800 -27.64831 -26.35072 -25.88837 -24.20087 -23.48970 -22.51109 -21.72233 -20.78529 -19.34864 -19.01278 -17.86809 -17.84297 -16.80173 -16.47978 -16.23722 -16.00818 -15.46557 -15.15528 -14.99727 -14.65901 -14.60549 -14.37296 -14.05336 -14.01963 -13.75876 -13.56957 -13.35914 -13.16644 -12.98166 -12.79213 -12.72453 -12.63020 -12.23730 -12.18357 -11.79841 -11.63926 -11.58203 -11.51591 -11.48056 -11.13834 -11.07504 -11.03582 -11.00412 -10.74561 -10.37932 -10.20059 -10.06520 -9.91759 -9.49271 -9.03933 -8.44011 -8.03707 -7.93932 -6.39601 -3.80576 2.36040 2.55045 3.19452 3.27873 3.33402 3.34195 3.92411 4.06169 4.25283 4.28526 4.44321 4.58264 4.62124 4.65584 4.69687 4.70642 4.76229 4.80733 4.87008 5.03474 5.11342 5.17105 5.18305 5.23039 5.26184 5.29835 5.37702 5.40493 5.42932 5.46394 5.51496 5.52310 5.60185 5.66160 5.76067 5.77064 5.81409 5.84663 6.00261 6.10190 6.14295 6.20565 6.30720 6.86286 7.10390 7.19049 7.57064 7.61318 7.90085 8.08004 8.63010 9.19568 9.56256 10.07449 10.78091 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.014093 B = 0.001877 C = 0.001698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1986.256366 B =14916.534395 C =16481.918231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.082 3.918 3 C -0.176 4.176 4 O -0.387 6.387 5 C 0.077 3.923 6 C -0.137 4.137 7 C 0.517 3.483 8 O -0.540 6.540 9 N -0.607 5.607 10 C 0.103 3.897 11 C -0.134 4.134 12 C -0.108 4.108 13 C 0.076 3.924 14 H 0.080 0.920 15 N -0.656 5.656 16 C 0.048 3.952 17 C 0.441 3.559 18 O -0.584 6.584 19 N -0.563 5.563 20 C -0.300 4.300 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.901 5.901 24 Si 0.931 3.069 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.270 1.270 28 C 0.080 3.920 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.058 0.942 38 H 0.102 0.898 39 H 0.101 0.899 40 H 0.072 0.928 41 H 0.086 0.914 42 H 0.068 0.932 43 H 0.079 0.921 44 H 0.077 0.923 45 H 0.065 0.935 46 H 0.350 0.650 47 H 0.086 0.914 48 H 0.045 0.955 49 H 0.392 0.608 50 H 0.271 0.729 51 H 0.093 0.907 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.878 17.696 7.062 29.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.024 3.976 3 C -0.234 4.234 4 O -0.307 6.307 5 C 0.000 4.000 6 C -0.177 4.177 7 C 0.305 3.695 8 O -0.417 6.417 9 N -0.341 5.341 10 C -0.019 4.019 11 C -0.173 4.173 12 C -0.146 4.146 13 C -0.035 4.035 14 H 0.099 0.901 15 N -0.287 5.287 16 C -0.084 4.084 17 C 0.226 3.774 18 O -0.469 6.469 19 N -0.199 5.199 20 C -0.429 4.429 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.542 5.542 24 Si 0.758 3.242 25 H -0.204 1.204 26 H -0.209 1.209 27 H -0.194 1.194 28 C -0.044 4.044 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.120 0.880 39 H 0.119 0.881 40 H 0.090 0.910 41 H 0.105 0.895 42 H 0.087 0.913 43 H 0.097 0.903 44 H 0.095 0.905 45 H 0.084 0.916 46 H 0.170 0.830 47 H 0.104 0.896 48 H 0.064 0.936 49 H 0.226 0.774 50 H 0.081 0.919 51 H 0.111 0.889 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -22.399 16.991 7.363 29.062 hybrid contribution 0.873 0.416 -1.268 1.595 sum -21.525 17.407 6.095 28.346 Atomic orbital electron populations 1.21865 0.93532 1.02754 1.02513 1.22081 0.94934 0.92454 0.88129 1.22305 1.01749 0.96730 1.02566 1.87831 1.36653 1.70161 1.36028 1.22155 0.85474 0.96048 0.96323 1.21490 0.95143 1.01167 0.99885 1.20438 0.86770 0.78632 0.83660 1.90739 1.64286 1.60976 1.25700 1.48062 1.21826 1.52508 1.11708 1.21944 0.97968 0.97752 0.84264 1.22008 0.98288 0.94838 1.02144 1.21505 0.95015 1.01995 0.96126 1.21970 0.92677 0.91236 0.97664 0.90146 1.60258 1.02938 1.42143 1.23402 1.21746 0.97729 0.99159 0.89808 1.19780 0.87854 0.84948 0.84780 1.90519 1.61122 1.62861 1.32348 1.41868 1.18245 1.50427 1.09410 1.19707 0.94081 1.32182 0.96970 0.87899 1.25274 0.99928 0.97984 0.94798 1.69618 1.38575 1.45927 1.00110 0.85847 0.81507 0.79370 0.77491 1.20394 1.20949 1.19430 1.22582 0.84438 0.93615 1.03783 0.91799 0.91227 0.91951 0.92026 0.91607 0.91786 0.92367 0.92461 0.92338 0.87968 0.88092 0.90952 0.89537 0.91327 0.90287 0.90455 0.91584 0.82973 0.89561 0.93650 0.77429 0.91867 0.88897 0.91240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.56 37.16 0.36 -0.52 16 2 C 0.08 0.60 3.34 -26.73 -0.09 0.51 16 3 C -0.18 -1.14 9.53 37.16 0.35 -0.79 16 4 O -0.39 -3.54 9.99 -35.23 -0.35 -3.89 16 5 C 0.08 0.72 5.04 37.16 0.19 0.90 16 6 C -0.14 -1.11 4.41 -27.88 -0.12 -1.23 16 7 C 0.52 5.88 7.70 -10.98 -0.08 5.80 16 8 O -0.54 -8.39 15.40 5.56 0.09 -8.30 16 9 N -0.61 -6.12 2.97 -172.48 -0.51 -6.64 16 10 C 0.10 0.70 6.37 -3.49 -0.02 0.67 16 11 C -0.13 -0.94 6.10 -26.38 -0.16 -1.10 16 12 C -0.11 -1.06 5.49 -26.69 -0.15 -1.21 16 13 C 0.08 0.93 2.62 -67.58 -0.18 0.75 16 14 H 0.08 1.04 7.80 -51.93 -0.41 0.63 16 15 N -0.66 -10.44 5.88 -107.85 -0.63 -11.07 16 16 C 0.05 0.87 5.97 -4.97 -0.03 0.84 16 17 C 0.44 10.59 7.82 -10.98 -0.09 10.50 16 18 O -0.58 -15.99 15.78 5.55 0.09 -15.90 16 19 N -0.56 -14.58 5.29 -10.96 -0.06 -14.64 16 20 C -0.30 -8.50 9.68 -14.93 -0.14 -8.65 16 21 H 0.10 3.05 7.16 -52.49 -0.38 2.67 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -24.96 13.05 55.50 0.72 -24.23 16 24 Si 0.93 21.34 29.55 -169.99 -5.02 16.32 16 25 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 26 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 27 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 28 C 0.08 0.96 5.69 -3.69 -0.02 0.93 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.44 7.79 -51.93 -0.40 0.04 16 33 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.06 0.41 7.87 -51.93 -0.41 0.00 16 36 H 0.06 0.57 7.83 -51.93 -0.41 0.16 16 37 H 0.06 0.59 8.04 -51.93 -0.42 0.17 16 38 H 0.10 0.68 7.70 -51.93 -0.40 0.28 16 39 H 0.10 0.66 7.93 -51.93 -0.41 0.24 16 40 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.09 0.41 5.93 -51.93 -0.31 0.10 16 42 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 45 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.35 5.72 8.12 -39.29 -0.32 5.40 16 47 H 0.09 1.47 8.06 -51.93 -0.42 1.05 16 48 H 0.05 0.77 7.56 -51.93 -0.39 0.38 16 49 H 0.39 9.78 7.90 -40.82 -0.32 9.46 16 50 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 51 H 0.09 1.34 6.48 -51.93 -0.34 1.00 16 52 H 0.07 0.79 8.05 -51.93 -0.42 0.37 16 LS Contribution 417.96 15.07 6.30 6.30 Total: -1.00 -33.83 417.96 -8.77 -42.60 By element: Atomic # 1 Polarization: 20.64 SS G_CDS: -9.11 Total: 11.53 kcal Atomic # 6 Polarization: 8.20 SS G_CDS: -0.28 Total: 7.92 kcal Atomic # 7 Polarization: -56.10 SS G_CDS: -0.48 Total: -56.58 kcal Atomic # 8 Polarization: -27.91 SS G_CDS: -0.18 Total: -28.09 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -33.83 -8.77 -42.60 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207410789.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.396 kcal (2) G-P(sol) polarization free energy of solvation -33.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds