Wall clock time and date at job start Wed Apr 1 2020 01:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42898 * 113.99960 * 2 1 4 4 H 1.09000 * 109.46776 * 30.00584 * 3 2 1 5 5 C 1.52997 * 109.46903 * 270.00240 * 3 2 1 6 6 C 1.52998 * 109.46843 * 150.00201 * 3 2 1 7 7 C 1.53004 * 109.46948 * 294.99695 * 6 3 2 8 8 C 1.50706 * 109.46665 * 180.02562 * 7 6 3 9 9 O 1.21273 * 120.00397 * 0.02562 * 8 7 6 10 10 N 1.34778 * 119.99581 * 180.02562 * 8 7 6 11 11 C 1.46926 * 120.63336 * 0.02562 * 10 8 7 12 12 C 1.53191 * 108.89109 * 233.68039 * 11 10 8 13 13 C 1.53035 * 109.31327 * 305.29292 * 12 11 10 14 14 C 1.53038 * 109.54175 * 61.36680 * 13 12 11 15 15 H 1.09002 * 109.49557 * 58.58503 * 14 13 12 16 16 N 1.46897 * 109.49985 * 178.68566 * 14 13 12 17 17 C 1.46910 * 110.99576 * 274.99855 * 16 14 13 18 18 C 1.50706 * 109.46688 * 180.02562 * 17 16 14 19 19 O 1.21295 * 120.00204 * 0.02562 * 18 17 16 20 20 N 1.34774 * 119.99695 * 179.97438 * 18 17 16 21 21 C 1.37096 * 119.99987 * 180.02562 * 20 18 17 22 22 H 1.08004 * 119.99596 * 359.97438 * 21 20 18 23 23 C 1.38946 * 120.00064 * 180.02562 * 21 20 18 24 24 N 1.31419 * 120.00124 * 359.97438 * 23 21 20 25 25 Si 1.86806 * 120.00101 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47078 * 59.99352 * 25 23 21 27 27 H 1.48494 * 109.46995 * 179.97438 * 25 23 21 28 28 H 1.48498 * 109.46701 * 299.99521 * 25 23 21 29 29 C 1.47207 * 120.81118 * 180.14557 * 10 8 7 30 30 H 1.08999 * 109.46597 * 299.99328 * 1 2 3 31 31 H 1.08991 * 109.47087 * 59.99816 * 1 2 3 32 32 H 1.09000 * 109.47142 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47019 * 300.00054 * 5 3 2 34 34 H 1.09002 * 109.47404 * 60.00188 * 5 3 2 35 35 H 1.09009 * 109.46555 * 180.02562 * 5 3 2 36 36 H 1.09001 * 109.46669 * 175.00479 * 6 3 2 37 37 H 1.08996 * 109.47563 * 55.00174 * 6 3 2 38 38 H 1.09001 * 109.46796 * 60.00862 * 7 6 3 39 39 H 1.08994 * 109.47593 * 300.00089 * 7 6 3 40 40 H 1.09002 * 109.58861 * 113.82042 * 11 10 8 41 41 H 1.08996 * 109.58519 * 353.53933 * 11 10 8 42 42 H 1.09003 * 109.49975 * 65.24379 * 12 11 10 43 43 H 1.09000 * 109.49553 * 185.30642 * 12 11 10 44 44 H 1.09003 * 109.46332 * 181.39145 * 13 12 11 45 45 H 1.09004 * 109.45942 * 301.34050 * 13 12 11 46 46 H 1.00897 * 111.00264 * 151.04989 * 16 14 13 47 47 H 1.08994 * 109.46857 * 300.00032 * 17 16 14 48 48 H 1.08998 * 109.47006 * 60.00377 * 17 16 14 49 49 H 0.97003 * 120.00080 * 0.02562 * 20 18 17 50 50 H 0.96993 * 119.99875 * 180.02562 * 24 23 21 51 51 H 1.08996 * 109.53610 * 6.53286 * 29 10 8 52 52 H 1.09002 * 109.68003 * 246.22753 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9993 0.5139 5 6 2.2176 1.7713 -1.4425 6 6 3.3590 1.2632 0.7212 7 6 3.1383 0.9183 2.1955 8 6 4.4668 0.8773 2.9059 9 8 5.4891 1.1022 2.2937 10 7 4.5185 0.5907 4.2219 11 6 3.2886 0.3155 4.9771 12 6 3.2374 1.2417 6.1962 13 6 4.5221 1.0769 7.0113 14 6 5.7265 1.4730 6.1542 15 1 5.6131 2.5051 5.8222 16 7 6.9563 1.3446 6.9473 17 6 7.2010 2.5576 7.7391 18 6 8.4683 2.3893 8.5372 19 8 9.1052 1.3603 8.4541 20 7 8.8945 3.3825 9.3423 21 6 10.0476 3.2296 10.0679 22 1 10.6142 2.3130 9.9946 23 6 10.4867 4.2533 10.8985 24 7 9.7969 5.3683 10.9881 25 14 12.0575 4.0447 11.8877 26 1 13.1979 3.8180 10.9639 27 1 12.3052 5.2711 12.6876 28 1 11.9183 2.8794 12.7976 29 6 5.8060 0.5490 4.9344 30 1 -0.3632 0.5137 0.8901 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 2.8828 1.0774 -1.9563 34 1 1.2568 1.8014 -1.9563 35 1 2.6614 2.7670 -1.4424 36 1 3.8427 2.2369 0.6443 37 1 3.9932 0.5051 0.2617 38 1 2.6546 -0.0554 2.2723 39 1 2.5042 1.6764 2.6550 40 1 3.2872 -0.7234 5.3071 41 1 2.4216 0.4984 4.3425 42 1 3.1475 2.2759 5.8639 43 1 2.3780 0.9821 6.8144 44 1 4.4776 1.7167 7.8927 45 1 4.6240 0.0372 7.3224 46 1 7.7467 1.1325 6.3572 47 1 7.3035 3.4128 7.0712 48 1 6.3638 2.7241 8.4169 49 1 8.3853 4.2055 9.4085 50 1 10.1037 6.0831 11.5676 51 1 6.6012 0.8877 4.2704 52 1 6.0120 -0.4704 5.2607 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207880483.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:53:41 Heat of formation + Delta-G solvation = -129.460308 kcal Electronic energy + Delta-G solvation = -29704.876597 eV Core-core repulsion = 25510.874607 eV Total energy + Delta-G solvation = -4194.001990 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.49009 -38.90553 -38.38770 -37.61793 -35.12418 -34.12743 -33.82805 -32.37495 -31.26967 -30.99022 -29.75926 -27.17596 -26.35277 -26.05527 -24.48184 -23.63636 -22.68743 -21.51616 -20.43219 -19.36013 -18.95672 -17.87585 -17.48141 -17.28160 -16.36073 -16.08196 -15.73258 -15.48819 -15.39477 -15.29857 -14.85870 -14.56182 -14.25194 -14.19720 -13.92085 -13.74532 -13.62234 -13.52079 -13.22520 -13.00352 -12.77883 -12.64807 -12.51023 -12.23797 -11.92192 -11.85958 -11.74957 -11.52406 -11.48900 -11.40441 -11.08464 -11.05551 -11.00253 -10.85270 -10.73444 -10.43091 -10.20218 -10.10488 -9.91035 -9.48752 -8.84430 -8.44926 -8.08940 -7.94835 -6.40395 -3.81261 2.45246 2.71443 3.21468 3.26901 3.31574 3.34159 3.92053 4.08416 4.14383 4.29091 4.37661 4.54646 4.64057 4.68659 4.73808 4.81561 4.83089 4.89154 4.89840 4.93118 5.06860 5.09498 5.15919 5.20141 5.24291 5.26371 5.28789 5.33256 5.44537 5.46806 5.55356 5.63977 5.68497 5.72813 5.74284 5.80953 5.88944 5.91289 5.97159 6.05791 6.17980 6.26872 6.33531 6.77443 7.16469 7.23524 7.56318 7.63364 7.99122 8.07343 8.62531 9.19036 9.55432 10.06997 10.77269 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.026810 B = 0.001654 C = 0.001622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.151509 B =16920.430971 C =17259.033404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.384 6.384 3 C 0.084 3.916 4 H 0.061 0.939 5 C -0.175 4.175 6 C -0.102 4.102 7 C -0.136 4.136 8 C 0.514 3.486 9 O -0.541 6.541 10 N -0.611 5.611 11 C 0.106 3.894 12 C -0.135 4.135 13 C -0.110 4.110 14 C 0.076 3.924 15 H 0.045 0.955 16 N -0.661 5.661 17 C 0.053 3.947 18 C 0.441 3.559 19 O -0.583 6.583 20 N -0.563 5.563 21 C -0.300 4.300 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.931 3.069 26 H -0.274 1.274 27 H -0.285 1.285 28 H -0.273 1.273 29 C 0.110 3.890 30 H 0.041 0.959 31 H 0.039 0.961 32 H 0.085 0.915 33 H 0.065 0.935 34 H 0.056 0.944 35 H 0.067 0.933 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.099 0.901 39 H 0.090 0.910 40 H 0.072 0.928 41 H 0.084 0.916 42 H 0.065 0.935 43 H 0.078 0.922 44 H 0.068 0.932 45 H 0.073 0.927 46 H 0.351 0.649 47 H 0.043 0.957 48 H 0.086 0.914 49 H 0.392 0.608 50 H 0.272 0.728 51 H 0.091 0.909 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.746 -6.030 -19.297 31.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.303 6.303 3 C 0.026 3.974 4 H 0.079 0.921 5 C -0.232 4.232 6 C -0.140 4.140 7 C -0.176 4.176 8 C 0.303 3.697 9 O -0.418 6.418 10 N -0.345 5.345 11 C -0.017 4.017 12 C -0.174 4.174 13 C -0.148 4.148 14 C -0.035 4.035 15 H 0.063 0.937 16 N -0.294 5.294 17 C -0.080 4.080 18 C 0.226 3.774 19 O -0.467 6.467 20 N -0.200 5.200 21 C -0.430 4.430 22 H 0.120 0.880 23 C -0.179 4.179 24 N -0.544 5.544 25 Si 0.758 3.242 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 C -0.013 4.013 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.103 0.897 33 H 0.085 0.915 34 H 0.075 0.925 35 H 0.086 0.914 36 H 0.102 0.898 37 H 0.099 0.901 38 H 0.118 0.882 39 H 0.108 0.892 40 H 0.090 0.910 41 H 0.102 0.898 42 H 0.084 0.916 43 H 0.097 0.903 44 H 0.087 0.913 45 H 0.092 0.908 46 H 0.171 0.829 47 H 0.061 0.939 48 H 0.104 0.896 49 H 0.225 0.775 50 H 0.082 0.918 51 H 0.109 0.891 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -22.902 -6.926 -19.054 30.586 hybrid contribution 0.397 1.426 0.076 1.482 sum -22.505 -5.500 -18.977 29.948 Atomic orbital electron populations 1.22782 0.81287 1.02729 0.99869 1.87950 1.19428 1.27885 1.95083 1.22205 0.94827 0.84581 0.95773 0.92100 1.22269 1.02311 1.01983 0.96686 1.21482 0.95635 1.03909 0.92933 1.21664 0.95233 1.04434 0.96302 1.20735 0.91611 0.75908 0.81447 1.90707 1.36447 1.49193 1.65500 1.48153 1.07891 1.69915 1.08522 1.21801 0.86448 0.99770 0.93692 1.21944 0.98874 1.00016 0.96549 1.21552 0.92231 1.03019 0.98026 1.21833 0.91843 0.97750 0.92119 0.93721 1.60100 1.04994 1.35989 1.28346 1.21711 0.98355 0.90951 0.97005 1.19790 0.87588 0.85395 0.84592 1.90526 1.58652 1.28859 1.68628 1.41851 1.23625 1.15799 1.38735 1.19665 1.00406 1.02745 1.20149 0.87952 1.25261 0.99541 0.95011 0.98100 1.69607 1.39618 1.05643 1.39496 0.85909 0.81323 0.77498 0.79437 1.19918 1.20991 1.19882 1.21777 0.85706 1.00720 0.93065 0.94041 0.94191 0.89683 0.91550 0.92528 0.91380 0.89767 0.90112 0.88238 0.89216 0.90952 0.89783 0.91612 0.90324 0.91342 0.90806 0.82851 0.93860 0.89624 0.77478 0.91843 0.89069 0.90289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 10.82 101.05 1.09 1.24 16 2 O -0.38 -2.96 9.88 -35.23 -0.35 -3.30 16 3 C 0.08 0.55 2.72 -26.73 -0.07 0.48 16 4 H 0.06 0.32 7.79 -51.93 -0.40 -0.08 16 5 C -0.17 -1.05 9.53 37.16 0.35 -0.70 16 6 C -0.10 -0.83 4.21 -26.73 -0.11 -0.94 16 7 C -0.14 -1.04 3.94 -27.88 -0.11 -1.15 16 8 C 0.51 5.86 7.70 -10.98 -0.08 5.77 16 9 O -0.54 -8.33 15.41 5.56 0.09 -8.24 16 10 N -0.61 -6.33 2.98 -172.52 -0.51 -6.84 16 11 C 0.11 0.76 6.33 -3.71 -0.02 0.74 16 12 C -0.14 -1.03 6.08 -26.61 -0.16 -1.20 16 13 C -0.11 -1.19 5.39 -26.69 -0.14 -1.33 16 14 C 0.08 0.96 2.64 -67.57 -0.18 0.78 16 15 H 0.04 0.60 7.80 -51.93 -0.41 0.19 16 16 N -0.66 -10.77 5.94 -107.84 -0.64 -11.41 16 17 C 0.05 0.94 5.97 -4.97 -0.03 0.91 16 18 C 0.44 10.55 7.82 -10.98 -0.09 10.46 16 19 O -0.58 -16.01 15.78 5.54 0.09 -15.92 16 20 N -0.56 -14.45 5.29 -10.96 -0.06 -14.51 16 21 C -0.30 -8.47 9.68 -14.94 -0.14 -8.61 16 22 H 0.10 3.02 7.16 -52.48 -0.38 2.65 16 23 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 24 N -0.90 -24.70 13.05 55.50 0.72 -23.97 16 25 Si 0.93 21.24 29.55 -169.99 -5.02 16.21 16 26 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 27 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 28 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 29 C 0.11 1.34 5.71 -3.54 -0.02 1.32 16 30 H 0.04 0.16 8.08 -51.93 -0.42 -0.26 16 31 H 0.04 0.16 7.87 -51.93 -0.41 -0.24 16 32 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.30 7.87 -51.93 -0.41 -0.11 16 35 H 0.07 0.36 8.14 -51.92 -0.42 -0.06 16 36 H 0.08 0.71 8.10 -51.93 -0.42 0.29 16 37 H 0.08 0.80 8.10 -51.93 -0.42 0.38 16 38 H 0.10 0.69 7.62 -51.93 -0.40 0.29 16 39 H 0.09 0.51 7.70 -51.93 -0.40 0.11 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.08 0.42 5.93 -51.93 -0.31 0.11 16 42 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.07 0.79 7.43 -51.93 -0.39 0.41 16 45 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.35 6.01 8.06 -39.29 -0.32 5.70 16 47 H 0.04 0.72 8.06 -51.93 -0.42 0.30 16 48 H 0.09 1.41 7.42 -51.93 -0.39 1.02 16 49 H 0.39 9.60 7.90 -40.82 -0.32 9.28 16 50 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 51 H 0.09 1.27 7.02 -51.93 -0.36 0.91 16 52 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 LS Contribution 416.61 15.07 6.28 6.28 Total: -1.00 -33.98 416.61 -8.30 -42.28 By element: Atomic # 1 Polarization: 20.22 SS G_CDS: -9.08 Total: 11.14 kcal Atomic # 6 Polarization: 8.10 SS G_CDS: 0.18 Total: 8.28 kcal Atomic # 7 Polarization: -56.25 SS G_CDS: -0.49 Total: -56.73 kcal Atomic # 8 Polarization: -27.29 SS G_CDS: -0.17 Total: -27.46 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -33.98 -8.30 -42.28 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207880483.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.177 kcal (2) G-P(sol) polarization free energy of solvation -33.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds