Wall clock time and date at job start Wed Apr 1 2020 01:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42898 * 113.99960 * 2 1 4 4 H 1.09000 * 109.46776 * 30.00584 * 3 2 1 5 5 C 1.52997 * 109.46903 * 270.00240 * 3 2 1 6 6 C 1.52998 * 109.46843 * 150.00201 * 3 2 1 7 7 C 1.53004 * 109.46948 * 294.99695 * 6 3 2 8 8 C 1.50706 * 109.46665 * 180.02562 * 7 6 3 9 9 O 1.21273 * 120.00397 * 0.02562 * 8 7 6 10 10 N 1.34778 * 119.99581 * 180.02562 * 8 7 6 11 11 C 1.46926 * 120.63336 * 0.02562 * 10 8 7 12 12 C 1.53191 * 108.89109 * 233.68039 * 11 10 8 13 13 C 1.53035 * 109.31327 * 305.29292 * 12 11 10 14 14 C 1.53038 * 109.54175 * 61.36680 * 13 12 11 15 15 H 1.09002 * 109.49557 * 58.58503 * 14 13 12 16 16 N 1.46897 * 109.49985 * 178.68566 * 14 13 12 17 17 C 1.46910 * 110.99576 * 274.99855 * 16 14 13 18 18 C 1.50706 * 109.46688 * 180.02562 * 17 16 14 19 19 O 1.21295 * 120.00204 * 0.02562 * 18 17 16 20 20 N 1.34774 * 119.99695 * 179.97438 * 18 17 16 21 21 C 1.37096 * 119.99987 * 180.02562 * 20 18 17 22 22 H 1.08004 * 119.99596 * 359.97438 * 21 20 18 23 23 C 1.38946 * 120.00064 * 180.02562 * 21 20 18 24 24 N 1.31419 * 120.00124 * 359.97438 * 23 21 20 25 25 Si 1.86806 * 120.00101 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47078 * 59.99352 * 25 23 21 27 27 H 1.48494 * 109.46995 * 179.97438 * 25 23 21 28 28 H 1.48498 * 109.46701 * 299.99521 * 25 23 21 29 29 C 1.47207 * 120.81118 * 180.14557 * 10 8 7 30 30 H 1.08999 * 109.46597 * 299.99328 * 1 2 3 31 31 H 1.08991 * 109.47087 * 59.99816 * 1 2 3 32 32 H 1.09000 * 109.47142 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47019 * 300.00054 * 5 3 2 34 34 H 1.09002 * 109.47404 * 60.00188 * 5 3 2 35 35 H 1.09009 * 109.46555 * 180.02562 * 5 3 2 36 36 H 1.09001 * 109.46669 * 175.00479 * 6 3 2 37 37 H 1.08996 * 109.47563 * 55.00174 * 6 3 2 38 38 H 1.09001 * 109.46796 * 60.00862 * 7 6 3 39 39 H 1.08994 * 109.47593 * 300.00089 * 7 6 3 40 40 H 1.09002 * 109.58861 * 113.82042 * 11 10 8 41 41 H 1.08996 * 109.58519 * 353.53933 * 11 10 8 42 42 H 1.09003 * 109.49975 * 65.24379 * 12 11 10 43 43 H 1.09000 * 109.49553 * 185.30642 * 12 11 10 44 44 H 1.09003 * 109.46332 * 181.39145 * 13 12 11 45 45 H 1.09004 * 109.45942 * 301.34050 * 13 12 11 46 46 H 1.00897 * 111.00264 * 151.04989 * 16 14 13 47 47 H 1.08994 * 109.46857 * 300.00032 * 17 16 14 48 48 H 1.08998 * 109.47006 * 60.00377 * 17 16 14 49 49 H 0.97003 * 120.00080 * 0.02562 * 20 18 17 50 50 H 0.96993 * 119.99875 * 180.02562 * 24 23 21 51 51 H 1.08996 * 109.53610 * 6.53286 * 29 10 8 52 52 H 1.09002 * 109.68003 * 246.22753 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9993 0.5139 5 6 2.2176 1.7713 -1.4425 6 6 3.3590 1.2632 0.7212 7 6 3.1383 0.9183 2.1955 8 6 4.4668 0.8773 2.9059 9 8 5.4891 1.1022 2.2937 10 7 4.5185 0.5907 4.2219 11 6 3.2886 0.3155 4.9771 12 6 3.2374 1.2417 6.1962 13 6 4.5221 1.0769 7.0113 14 6 5.7265 1.4730 6.1542 15 1 5.6131 2.5051 5.8222 16 7 6.9563 1.3446 6.9473 17 6 7.2010 2.5576 7.7391 18 6 8.4683 2.3893 8.5372 19 8 9.1052 1.3603 8.4541 20 7 8.8945 3.3825 9.3423 21 6 10.0476 3.2296 10.0679 22 1 10.6142 2.3130 9.9946 23 6 10.4867 4.2533 10.8985 24 7 9.7969 5.3683 10.9881 25 14 12.0575 4.0447 11.8877 26 1 13.1979 3.8180 10.9639 27 1 12.3052 5.2711 12.6876 28 1 11.9183 2.8794 12.7976 29 6 5.8060 0.5490 4.9344 30 1 -0.3632 0.5137 0.8901 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 2.8828 1.0774 -1.9563 34 1 1.2568 1.8014 -1.9563 35 1 2.6614 2.7670 -1.4424 36 1 3.8427 2.2369 0.6443 37 1 3.9932 0.5051 0.2617 38 1 2.6546 -0.0554 2.2723 39 1 2.5042 1.6764 2.6550 40 1 3.2872 -0.7234 5.3071 41 1 2.4216 0.4984 4.3425 42 1 3.1475 2.2759 5.8639 43 1 2.3780 0.9821 6.8144 44 1 4.4776 1.7167 7.8927 45 1 4.6240 0.0372 7.3224 46 1 7.7467 1.1325 6.3572 47 1 7.3035 3.4128 7.0712 48 1 6.3638 2.7241 8.4169 49 1 8.3853 4.2055 9.4085 50 1 10.1037 6.0831 11.5676 51 1 6.6012 0.8877 4.2704 52 1 6.0120 -0.4704 5.2607 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207880483.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:53:40 Heat of formation + Delta-G solvation = -154.621262 kcal Electronic energy + Delta-G solvation = -29705.967658 eV Core-core repulsion = 25510.874607 eV Total energy + Delta-G solvation = -4195.093051 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.35897 -40.21622 -39.37990 -38.70865 -36.39891 -35.77991 -34.71274 -33.33919 -33.18944 -31.80987 -30.67732 -27.97625 -27.53542 -26.81041 -25.94974 -24.64569 -23.53176 -22.07598 -21.34705 -21.15055 -19.99581 -19.77048 -18.30601 -17.90001 -17.75334 -17.13187 -16.79339 -16.51823 -16.46129 -16.13403 -15.95952 -15.82278 -15.52771 -15.36940 -15.09454 -14.90853 -14.55017 -14.38140 -14.10255 -13.90401 -13.65358 -13.57046 -13.41959 -13.37017 -13.27662 -13.15724 -12.89842 -12.45150 -12.41648 -12.39059 -12.22777 -12.12861 -12.05491 -11.83085 -11.78092 -11.64276 -11.52376 -11.51615 -10.86750 -10.49767 -10.37747 -10.03620 -9.72770 -9.41815 -8.47843 -5.97042 1.39256 1.41217 1.52307 1.59680 1.88503 2.02487 2.28857 2.89845 2.91698 3.18886 3.40335 3.50575 3.77089 3.79964 3.91065 4.03742 4.09601 4.12178 4.20734 4.25040 4.28517 4.35626 4.41818 4.48004 4.51864 4.52930 4.57227 4.65366 4.66566 4.71395 4.77860 4.80275 4.84033 4.94108 4.99197 4.99773 5.05657 5.10260 5.20880 5.22544 5.33283 5.37012 5.40013 5.47441 5.85961 6.05959 6.28395 6.35810 6.40127 6.57965 7.10553 7.14012 7.53426 8.08741 8.69247 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.026810 B = 0.001654 C = 0.001622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.151509 B =16920.430971 C =17259.033404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.407 6.407 3 C 0.088 3.912 4 H 0.083 0.917 5 C -0.176 4.176 6 C -0.101 4.101 7 C -0.125 4.125 8 C 0.507 3.493 9 O -0.592 6.592 10 N -0.608 5.608 11 C 0.101 3.899 12 C -0.127 4.127 13 C -0.109 4.109 14 C 0.082 3.918 15 H 0.042 0.958 16 N -0.672 5.672 17 C 0.069 3.931 18 C 0.437 3.563 19 O -0.623 6.623 20 N -0.571 5.571 21 C -0.337 4.337 22 H 0.079 0.921 23 C -0.012 4.012 24 N -0.919 5.919 25 Si 0.994 3.006 26 H -0.273 1.273 27 H -0.269 1.269 28 H -0.271 1.271 29 C 0.115 3.885 30 H 0.056 0.944 31 H 0.045 0.955 32 H 0.091 0.909 33 H 0.051 0.949 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.053 0.947 38 H 0.114 0.886 39 H 0.121 0.879 40 H 0.082 0.918 41 H 0.116 0.884 42 H 0.067 0.933 43 H 0.105 0.895 44 H 0.062 0.938 45 H 0.068 0.932 46 H 0.343 0.657 47 H 0.060 0.940 48 H 0.107 0.893 49 H 0.396 0.604 50 H 0.278 0.722 51 H 0.066 0.934 52 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.567 -5.556 -19.017 33.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.327 6.327 3 C 0.030 3.970 4 H 0.101 0.899 5 C -0.233 4.233 6 C -0.139 4.139 7 C -0.165 4.165 8 C 0.297 3.703 9 O -0.473 6.473 10 N -0.341 5.341 11 C -0.020 4.020 12 C -0.165 4.165 13 C -0.147 4.147 14 C -0.029 4.029 15 H 0.060 0.940 16 N -0.305 5.305 17 C -0.064 4.064 18 C 0.225 3.775 19 O -0.509 6.509 20 N -0.208 5.208 21 C -0.467 4.467 22 H 0.097 0.903 23 C -0.212 4.212 24 N -0.560 5.560 25 Si 0.818 3.182 26 H -0.198 1.198 27 H -0.194 1.194 28 H -0.196 1.196 29 C -0.009 4.009 30 H 0.075 0.925 31 H 0.064 0.936 32 H 0.109 0.891 33 H 0.070 0.930 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.072 0.928 38 H 0.132 0.868 39 H 0.139 0.861 40 H 0.100 0.900 41 H 0.134 0.866 42 H 0.086 0.914 43 H 0.123 0.877 44 H 0.080 0.920 45 H 0.086 0.914 46 H 0.161 0.839 47 H 0.078 0.922 48 H 0.125 0.875 49 H 0.230 0.770 50 H 0.088 0.912 51 H 0.085 0.915 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -25.791 -6.442 -18.763 32.538 hybrid contribution 1.245 1.241 -0.040 1.759 sum -24.546 -5.201 -18.803 31.354 Atomic orbital electron populations 1.22954 0.79832 1.03551 1.00898 1.87922 1.21099 1.28416 1.95222 1.22174 0.94132 0.84815 0.95847 0.89933 1.22277 1.02548 1.01897 0.96593 1.21429 0.96303 1.02572 0.93559 1.21679 0.93216 1.06158 0.95405 1.21493 0.92429 0.74807 0.81545 1.90687 1.38459 1.51515 1.66619 1.48274 1.08168 1.69187 1.08501 1.22107 0.85843 1.00298 0.93796 1.21920 0.97781 1.00334 0.96465 1.21564 0.92836 1.02397 0.97941 1.21880 0.90977 0.97737 0.92268 0.93967 1.60161 1.05999 1.35270 1.29043 1.21549 0.95547 0.92249 0.97037 1.20812 0.88749 0.84153 0.83821 1.90493 1.60367 1.30344 1.69709 1.41911 1.23346 1.16429 1.39160 1.19653 1.01945 1.02751 1.22334 0.90304 1.26051 1.02374 0.94370 0.98362 1.69666 1.40692 1.05974 1.39655 0.84974 0.77356 0.77952 0.77956 1.19806 1.19356 1.19642 1.21547 0.86529 1.00289 0.92516 0.92501 0.93639 0.89083 0.93004 0.91538 0.90805 0.90553 0.92796 0.86793 0.86140 0.89988 0.86560 0.91385 0.87651 0.91960 0.91368 0.83858 0.92176 0.87548 0.76966 0.91239 0.91535 0.90486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 10.82 113.37 1.23 1.39 16 2 O -0.41 -5.48 9.88 -148.98 -1.47 -6.95 16 3 C 0.09 1.00 2.72 30.59 0.08 1.08 16 4 H 0.08 0.59 7.79 -2.39 -0.02 0.57 16 5 C -0.18 -1.94 9.53 71.98 0.69 -1.25 16 6 C -0.10 -1.56 4.21 30.59 0.13 -1.43 16 7 C -0.13 -1.63 3.94 29.85 0.12 -1.51 16 8 C 0.51 11.16 7.70 87.66 0.68 11.84 16 9 O -0.59 -18.88 15.41 -3.01 -0.05 -18.93 16 10 N -0.61 -11.78 2.98 -818.12 -2.44 -14.22 16 11 C 0.10 1.11 6.33 86.36 0.55 1.65 16 12 C -0.13 -1.49 6.08 30.67 0.19 -1.30 16 13 C -0.11 -2.15 5.39 30.62 0.17 -1.98 16 14 C 0.08 2.03 2.64 45.01 0.12 2.15 16 15 H 0.04 1.08 7.80 -2.39 -0.02 1.07 16 16 N -0.67 -22.06 5.94 -495.09 -2.94 -25.00 16 17 C 0.07 2.44 5.97 85.56 0.51 2.95 16 18 C 0.44 21.35 7.82 87.66 0.69 22.03 16 19 O -0.62 -35.36 15.78 -3.08 -0.05 -35.41 16 20 N -0.57 -29.89 5.29 -306.98 -1.62 -31.51 16 21 C -0.34 -19.48 9.68 84.04 0.81 -18.67 16 22 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 23 C -0.01 -0.63 5.50 84.92 0.47 -0.16 16 24 N -0.92 -49.94 13.05 21.66 0.28 -49.65 16 25 Si 0.99 43.36 29.55 68.60 2.03 45.39 16 26 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 27 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 28 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 29 C 0.11 2.83 5.71 86.32 0.49 3.32 16 30 H 0.06 0.23 8.08 -2.39 -0.02 0.21 16 31 H 0.04 0.27 7.87 -2.39 -0.02 0.25 16 32 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.07 0.59 7.87 -2.39 -0.02 0.57 16 35 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 36 H 0.08 1.28 8.10 -2.39 -0.02 1.26 16 37 H 0.05 1.11 8.10 -2.39 -0.02 1.09 16 38 H 0.11 1.21 7.62 -2.39 -0.02 1.19 16 39 H 0.12 0.86 7.70 -2.39 -0.02 0.84 16 40 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.12 0.58 5.93 -2.39 -0.01 0.56 16 42 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 44 H 0.06 1.31 7.43 -2.39 -0.02 1.29 16 45 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 46 H 0.34 12.18 8.06 -89.70 -0.72 11.46 16 47 H 0.06 1.95 8.06 -2.39 -0.02 1.94 16 48 H 0.11 3.36 7.42 -2.39 -0.02 3.35 16 49 H 0.40 19.64 7.90 -92.71 -0.73 18.90 16 50 H 0.28 14.15 8.31 -92.71 -0.77 13.38 16 51 H 0.07 1.97 7.02 -2.39 -0.02 1.95 16 52 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -76.44 416.61 0.11 -76.34 By element: Atomic # 1 Polarization: 40.38 SS G_CDS: -0.54 Total: 39.85 kcal Atomic # 6 Polarization: 13.20 SS G_CDS: 6.90 Total: 20.10 kcal Atomic # 7 Polarization: -113.66 SS G_CDS: -6.72 Total: -120.38 kcal Atomic # 8 Polarization: -59.72 SS G_CDS: -1.57 Total: -61.29 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -76.44 0.11 -76.34 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207880483.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.285 kcal (2) G-P(sol) polarization free energy of solvation -76.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds