Wall clock time and date at job start Wed Apr 1 2020 01:53:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42904 * 114.00327 * 2 1 4 4 H 1.09004 * 109.46505 * 330.00068 * 3 2 1 5 5 C 1.52997 * 109.47100 * 89.99381 * 3 2 1 6 6 C 1.52997 * 109.47396 * 210.00003 * 3 2 1 7 7 C 1.53000 * 109.47060 * 64.99895 * 6 3 2 8 8 C 1.50703 * 109.46912 * 179.97438 * 7 6 3 9 9 O 1.21278 * 119.99985 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00161 * 179.97438 * 8 7 6 11 11 C 1.46926 * 120.62694 * 0.02562 * 10 8 7 12 12 C 1.53193 * 108.77347 * 233.58184 * 11 10 8 13 13 C 1.53040 * 109.31511 * 305.36538 * 12 11 10 14 14 C 1.53043 * 109.53764 * 61.36180 * 13 12 11 15 15 H 1.09001 * 109.49397 * 58.58740 * 14 13 12 16 16 N 1.46900 * 109.49951 * 178.65263 * 14 13 12 17 17 C 1.46904 * 110.99796 * 275.00179 * 16 14 13 18 18 C 1.50697 * 109.46725 * 179.97438 * 17 16 14 19 19 O 1.21297 * 120.00427 * 0.02562 * 18 17 16 20 20 N 1.34781 * 120.00023 * 179.97438 * 18 17 16 21 21 C 1.37099 * 120.00121 * 180.02562 * 20 18 17 22 22 H 1.07996 * 119.99696 * 0.02562 * 21 20 18 23 23 C 1.38949 * 119.99756 * 180.02562 * 21 20 18 24 24 N 1.31412 * 119.99657 * 179.97438 * 23 21 20 25 25 Si 1.86799 * 120.00207 * 0.02562 * 23 21 20 26 26 H 1.48495 * 109.47553 * 89.99926 * 25 23 21 27 27 H 1.48506 * 109.46805 * 210.00151 * 25 23 21 28 28 H 1.48499 * 109.46909 * 329.99553 * 25 23 21 29 29 C 1.46924 * 120.63050 * 179.72112 * 10 8 7 30 30 H 1.09001 * 109.46894 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47237 * 299.99973 * 1 2 3 32 32 H 1.09001 * 109.47057 * 60.00409 * 1 2 3 33 33 H 1.09000 * 109.47400 * 300.00698 * 5 3 2 34 34 H 1.09004 * 109.46881 * 60.00917 * 5 3 2 35 35 H 1.09002 * 109.47016 * 180.02562 * 5 3 2 36 36 H 1.09002 * 109.47153 * 304.99576 * 6 3 2 37 37 H 1.09001 * 109.46832 * 184.99767 * 6 3 2 38 38 H 1.09001 * 109.47194 * 299.99650 * 7 6 3 39 39 H 1.08992 * 109.47399 * 59.99823 * 7 6 3 40 40 H 1.09000 * 109.58936 * 353.37017 * 11 10 8 41 41 H 1.09003 * 109.58868 * 113.65323 * 11 10 8 42 42 H 1.09005 * 109.49853 * 65.31867 * 12 11 10 43 43 H 1.09005 * 109.50030 * 185.38261 * 12 11 10 44 44 H 1.08999 * 109.46350 * 181.38712 * 13 12 11 45 45 H 1.08997 * 109.45908 * 301.34736 * 13 12 11 46 46 H 1.00898 * 111.00012 * 151.04989 * 16 14 13 47 47 H 1.08994 * 109.47063 * 300.00213 * 17 16 14 48 48 H 1.09002 * 109.47245 * 60.00274 * 17 16 14 49 49 H 0.97000 * 119.99567 * 0.02562 * 20 18 17 50 50 H 0.96997 * 119.99604 * 180.02562 * 24 23 21 51 51 H 1.09000 * 109.58442 * 246.20483 * 29 10 8 52 52 H 1.08998 * 109.58870 * 6.63104 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3449 1.9993 -0.5139 5 6 2.2176 1.7714 1.4425 6 6 3.3589 1.2633 -0.7212 7 6 3.1383 0.9184 -2.1954 8 6 4.4667 0.8775 -2.9060 9 8 5.4892 1.1015 -2.2934 10 7 4.5186 0.5908 -4.2219 11 6 3.2886 0.3166 -4.9773 12 6 3.4400 -1.0286 -5.6944 13 6 4.7101 -1.0070 -6.5479 14 6 5.9292 -0.8005 -5.6461 15 1 5.9765 -1.6021 -4.9091 16 7 7.1505 -0.8122 -6.4624 17 6 7.6242 -2.1854 -6.6813 18 6 8.8752 -2.1573 -7.5210 19 8 9.3280 -1.0976 -7.8995 20 7 9.4917 -3.3097 -7.8507 21 6 10.6301 -3.2841 -8.6142 22 1 11.0331 -2.3405 -8.9511 23 6 11.2652 -4.4722 -8.9545 24 7 12.3561 -4.4476 -9.6867 25 14 10.5676 -6.1042 -8.3722 26 1 9.6059 -6.6193 -9.3798 27 1 11.6726 -7.0809 -8.1980 28 1 9.8698 -5.9100 -7.0759 29 6 5.8055 0.5532 -4.9296 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.2567 1.8014 1.9563 34 1 2.8829 1.0775 1.9563 35 1 2.6606 2.7673 1.4425 36 1 3.9931 0.5052 -0.2617 37 1 3.8427 2.2370 -0.6443 38 1 2.6546 -0.0553 -2.2724 39 1 2.5041 1.6764 -2.6550 40 1 2.4415 0.2725 -4.2927 41 1 3.1256 1.1073 -5.7097 42 1 3.5107 -1.8281 -4.9569 43 1 2.5741 -1.1993 -6.3342 44 1 4.8072 -1.9542 -7.0785 45 1 4.6494 -0.1917 -7.2688 46 1 7.8711 -0.2437 -6.0432 47 1 7.8414 -2.6523 -5.7206 48 1 6.8534 -2.7578 -7.1974 49 1 9.1298 -4.1571 -7.5477 50 1 12.7993 -5.2770 -9.9246 51 1 5.8447 1.3614 -5.6600 52 1 6.6197 0.6652 -4.2137 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207880485.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:53:47 Heat of formation + Delta-G solvation = -149.860972 kcal Electronic energy + Delta-G solvation = -29824.633861 eV Core-core repulsion = 25629.747232 eV Total energy + Delta-G solvation = -4194.886629 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.36658 -40.35122 -39.38687 -38.71184 -36.42129 -35.82299 -34.71549 -33.77586 -33.23301 -31.82956 -30.70140 -28.09455 -27.53804 -26.80114 -25.79703 -24.59775 -23.52527 -22.06734 -21.35002 -21.32888 -20.35910 -19.79342 -18.31087 -17.83306 -17.78747 -17.19769 -16.86089 -16.62528 -16.50790 -16.08144 -15.90262 -15.78560 -15.53911 -15.18596 -15.08092 -14.90075 -14.60331 -14.49792 -14.17944 -14.11104 -13.87985 -13.68720 -13.46916 -13.36877 -13.30851 -13.15647 -12.94674 -12.43957 -12.42187 -12.38544 -12.21260 -12.07041 -11.99793 -11.82134 -11.77360 -11.63876 -11.53008 -11.52117 -10.86310 -10.49840 -10.47048 -10.26895 -9.72123 -9.42019 -8.42885 -6.04069 1.29101 1.34264 1.43253 1.59624 1.89450 1.92649 2.21598 2.71319 2.91300 3.12787 3.31566 3.48433 3.76129 3.80002 3.91170 4.03990 4.09118 4.11758 4.15238 4.20602 4.26458 4.35723 4.36921 4.48186 4.48652 4.52302 4.56902 4.65507 4.66594 4.71629 4.78024 4.80459 4.84425 4.94223 4.99183 5.00942 5.05657 5.10956 5.21437 5.22648 5.33366 5.37506 5.48901 5.51886 5.87599 5.99883 6.26615 6.36099 6.40169 6.57338 6.85570 7.14530 7.36858 7.93036 8.74713 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.019588 B = 0.001792 C = 0.001776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.131497 B =15618.782201 C =15763.337649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.407 6.407 3 C 0.088 3.912 4 H 0.084 0.916 5 C -0.176 4.176 6 C -0.101 4.101 7 C -0.125 4.125 8 C 0.506 3.494 9 O -0.592 6.592 10 N -0.608 5.608 11 C 0.101 3.899 12 C -0.127 4.127 13 C -0.109 4.109 14 C 0.081 3.919 15 H 0.044 0.956 16 N -0.675 5.675 17 C 0.065 3.935 18 C 0.449 3.551 19 O -0.613 6.613 20 N -0.590 5.590 21 C -0.331 4.331 22 H 0.055 0.945 23 C -0.014 4.014 24 N -0.933 5.933 25 Si 0.965 3.035 26 H -0.254 1.254 27 H -0.274 1.274 28 H -0.234 1.234 29 C 0.114 3.886 30 H 0.090 0.910 31 H 0.045 0.955 32 H 0.057 0.943 33 H 0.065 0.935 34 H 0.050 0.950 35 H 0.074 0.926 36 H 0.051 0.949 37 H 0.077 0.923 38 H 0.113 0.887 39 H 0.122 0.878 40 H 0.115 0.885 41 H 0.084 0.916 42 H 0.065 0.935 43 H 0.105 0.895 44 H 0.065 0.935 45 H 0.068 0.932 46 H 0.343 0.657 47 H 0.070 0.930 48 H 0.116 0.884 49 H 0.390 0.610 50 H 0.280 0.720 51 H 0.078 0.922 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.811 6.997 19.441 39.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.327 6.327 3 C 0.030 3.970 4 H 0.102 0.898 5 C -0.233 4.233 6 C -0.139 4.139 7 C -0.165 4.165 8 C 0.297 3.703 9 O -0.473 6.473 10 N -0.341 5.341 11 C -0.021 4.021 12 C -0.166 4.166 13 C -0.147 4.147 14 C -0.029 4.029 15 H 0.062 0.938 16 N -0.308 5.308 17 C -0.068 4.068 18 C 0.236 3.764 19 O -0.497 6.497 20 N -0.231 5.231 21 C -0.460 4.460 22 H 0.073 0.927 23 C -0.213 4.213 24 N -0.573 5.573 25 Si 0.785 3.215 26 H -0.179 1.179 27 H -0.199 1.199 28 H -0.157 1.157 29 C -0.010 4.010 30 H 0.108 0.892 31 H 0.064 0.936 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.069 0.931 35 H 0.093 0.907 36 H 0.070 0.930 37 H 0.096 0.904 38 H 0.131 0.869 39 H 0.140 0.860 40 H 0.133 0.867 41 H 0.103 0.897 42 H 0.084 0.916 43 H 0.123 0.877 44 H 0.084 0.916 45 H 0.087 0.913 46 H 0.162 0.838 47 H 0.088 0.912 48 H 0.134 0.866 49 H 0.225 0.775 50 H 0.089 0.911 51 H 0.096 0.904 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -33.046 7.593 18.802 38.772 hybrid contribution 1.140 -0.892 0.694 1.605 sum -31.906 6.701 19.496 37.987 Atomic orbital electron populations 1.22951 0.79837 1.03526 1.00908 1.87924 1.21098 1.28470 1.95220 1.22183 0.94156 0.84808 0.95836 0.89832 1.22279 1.02529 1.01910 0.96619 1.21430 0.96269 1.02588 0.93585 1.21676 0.93282 1.06116 0.95408 1.21487 0.92402 0.74970 0.81456 1.90690 1.38446 1.51588 1.66556 1.48216 1.08148 1.69113 1.08631 1.22119 0.85581 0.97789 0.96568 1.21920 0.98142 0.97139 0.99391 1.21568 0.92676 1.02780 0.97692 1.21981 0.90949 0.96453 0.93520 0.93759 1.60152 1.07865 1.10196 1.52580 1.21652 0.94317 0.92095 0.98716 1.20907 0.87402 0.83509 0.84534 1.90547 1.68619 1.31750 1.58815 1.42021 1.24791 1.07828 1.48494 1.19017 1.02753 0.95238 1.28980 0.92659 1.26121 0.95926 1.02875 0.96381 1.69804 1.19744 1.29989 1.37791 0.85361 0.79093 0.76722 0.80322 1.17873 1.19946 1.15724 1.21604 0.86625 0.97160 0.95578 0.89158 0.93649 0.92441 0.91569 0.93103 0.90714 0.92974 0.90405 0.86910 0.86028 0.86695 0.89728 0.91591 0.87678 0.91628 0.91346 0.83815 0.91237 0.86567 0.77485 0.91092 0.90407 0.91533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 10.82 113.37 1.23 1.38 16 2 O -0.41 -5.31 9.88 -148.98 -1.47 -6.78 16 3 C 0.09 0.93 2.72 30.59 0.08 1.01 16 4 H 0.08 0.52 7.79 -2.39 -0.02 0.50 16 5 C -0.18 -1.83 9.53 71.98 0.69 -1.15 16 6 C -0.10 -1.48 4.21 30.59 0.13 -1.35 16 7 C -0.13 -1.51 3.94 29.85 0.12 -1.39 16 8 C 0.51 10.57 7.70 87.66 0.67 11.25 16 9 O -0.59 -18.24 15.39 -3.02 -0.05 -18.29 16 10 N -0.61 -10.94 2.97 -818.00 -2.43 -13.36 16 11 C 0.10 0.97 6.34 86.36 0.55 1.51 16 12 C -0.13 -1.34 6.08 30.67 0.19 -1.16 16 13 C -0.11 -1.93 5.39 30.62 0.17 -1.76 16 14 C 0.08 1.86 2.66 45.15 0.12 1.98 16 15 H 0.04 1.04 7.80 -2.39 -0.02 1.02 16 16 N -0.68 -20.71 5.93 -494.35 -2.93 -23.64 16 17 C 0.06 2.06 5.97 85.56 0.51 2.57 16 18 C 0.45 20.81 7.82 87.66 0.69 21.49 16 19 O -0.61 -34.79 15.78 -3.08 -0.05 -34.84 16 20 N -0.59 -28.43 5.09 -306.98 -1.56 -29.99 16 21 C -0.33 -19.72 10.16 84.04 0.85 -18.87 16 22 H 0.06 3.92 7.39 -2.91 -0.02 3.90 16 23 C -0.01 -0.80 5.50 84.93 0.47 -0.33 16 24 N -0.93 -56.80 13.96 21.66 0.30 -56.50 16 25 Si 0.97 39.26 27.74 68.60 1.90 41.16 16 26 H -0.25 -9.73 7.11 99.48 0.71 -9.02 16 27 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 28 H -0.23 -8.09 6.52 99.48 0.65 -7.44 16 29 C 0.11 2.63 5.73 86.52 0.50 3.13 16 30 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.04 0.25 7.87 -2.39 -0.02 0.23 16 32 H 0.06 0.19 8.09 -2.39 -0.02 0.17 16 33 H 0.07 0.55 7.87 -2.39 -0.02 0.53 16 34 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.05 1.05 8.10 -2.39 -0.02 1.04 16 37 H 0.08 1.22 8.10 -2.39 -0.02 1.20 16 38 H 0.11 1.12 7.37 -2.39 -0.02 1.10 16 39 H 0.12 0.71 7.94 -2.39 -0.02 0.69 16 40 H 0.11 0.46 5.93 -2.39 -0.01 0.44 16 41 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 42 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 43 H 0.10 0.64 8.14 -2.38 -0.02 0.62 16 44 H 0.07 1.21 7.43 -2.39 -0.02 1.19 16 45 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 46 H 0.34 11.59 8.07 -89.70 -0.72 10.87 16 47 H 0.07 1.93 8.06 -2.39 -0.02 1.91 16 48 H 0.12 3.09 7.42 -2.39 -0.02 3.07 16 49 H 0.39 15.56 5.76 -92.71 -0.53 15.02 16 50 H 0.28 15.52 8.31 -92.71 -0.77 14.75 16 51 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 52 H 0.07 1.88 7.00 -2.39 -0.02 1.86 16 Total: -1.00 -84.68 413.46 0.27 -84.41 By element: Atomic # 1 Polarization: 39.91 SS G_CDS: -0.40 Total: 39.51 kcal Atomic # 6 Polarization: 11.37 SS G_CDS: 6.95 Total: 18.32 kcal Atomic # 7 Polarization: -116.87 SS G_CDS: -6.62 Total: -123.49 kcal Atomic # 8 Polarization: -58.34 SS G_CDS: -1.57 Total: -59.91 kcal Atomic # 14 Polarization: 39.26 SS G_CDS: 1.90 Total: 41.16 kcal Total: -84.68 0.27 -84.41 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207880485.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.447 kcal (2) G-P(sol) polarization free energy of solvation -84.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds