Wall clock time and date at job start Wed Apr 1 2020 01:53:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42906 * 113.99739 * 2 1 4 4 H 1.08990 * 109.46906 * 329.99412 * 3 2 1 5 5 C 1.53001 * 109.47015 * 89.99997 * 3 2 1 6 6 C 1.53002 * 109.46858 * 209.99688 * 3 2 1 7 7 C 1.53000 * 109.47220 * 65.00183 * 6 3 2 8 8 C 1.50701 * 109.47072 * 179.97438 * 7 6 3 9 9 O 1.21277 * 119.99810 * 0.02562 * 8 7 6 10 10 N 1.34773 * 119.99638 * 179.97438 * 8 7 6 11 11 C 1.46927 * 120.63516 * 359.97438 * 10 8 7 12 12 C 1.53192 * 108.77318 * 126.41107 * 11 10 8 13 13 C 1.53041 * 109.31320 * 54.63839 * 12 11 10 14 14 C 1.53033 * 109.53898 * 298.63305 * 13 12 11 15 15 H 1.09000 * 109.49457 * 301.41562 * 14 13 12 16 16 N 1.46894 * 109.49793 * 181.31580 * 14 13 12 17 17 C 1.46899 * 111.00242 * 85.16403 * 16 14 13 18 18 C 1.50694 * 109.47614 * 180.02562 * 17 16 14 19 19 O 1.21298 * 119.99764 * 359.97438 * 18 17 16 20 20 N 1.34773 * 120.00355 * 179.97438 * 18 17 16 21 21 C 1.37103 * 120.00274 * 179.97438 * 20 18 17 22 22 H 1.07998 * 119.99836 * 0.02562 * 21 20 18 23 23 C 1.38950 * 120.00058 * 179.97438 * 21 20 18 24 24 N 1.31410 * 120.00037 * 180.02562 * 23 21 20 25 25 Si 1.86800 * 120.00036 * 0.02562 * 23 21 20 26 26 H 1.48495 * 109.47285 * 89.99984 * 25 23 21 27 27 H 1.48501 * 109.47057 * 209.99776 * 25 23 21 28 28 H 1.48502 * 109.47245 * 329.99784 * 25 23 21 29 29 C 1.46926 * 120.62904 * 180.02562 * 10 8 7 30 30 H 1.08993 * 109.47698 * 300.00128 * 1 2 3 31 31 H 1.08997 * 109.46997 * 60.00762 * 1 2 3 32 32 H 1.09008 * 109.46878 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47408 * 59.99511 * 5 3 2 34 34 H 1.09001 * 109.47034 * 180.02562 * 5 3 2 35 35 H 1.09003 * 109.46926 * 299.99748 * 5 3 2 36 36 H 1.08997 * 109.47385 * 304.99702 * 6 3 2 37 37 H 1.09002 * 109.46581 * 185.00240 * 6 3 2 38 38 H 1.08998 * 109.46894 * 59.99785 * 7 6 3 39 39 H 1.09009 * 109.46754 * 299.99682 * 7 6 3 40 40 H 1.08997 * 109.58859 * 246.20187 * 11 10 8 41 41 H 1.09001 * 109.58530 * 6.48424 * 11 10 8 42 42 H 1.09005 * 109.49451 * 174.58740 * 12 11 10 43 43 H 1.08994 * 109.50120 * 294.65354 * 12 11 10 44 44 H 1.09002 * 109.46121 * 58.65084 * 13 12 11 45 45 H 1.09004 * 109.46035 * 178.62071 * 13 12 11 46 46 H 1.00907 * 110.99892 * 209.11322 * 16 14 13 47 47 H 1.08999 * 109.46777 * 299.99800 * 17 16 14 48 48 H 1.09000 * 109.47541 * 59.99631 * 17 16 14 49 49 H 0.97003 * 119.99949 * 359.97438 * 20 18 17 50 50 H 0.96997 * 119.99882 * 180.02562 * 24 23 21 51 51 H 1.09006 * 109.58406 * 353.37631 * 29 10 8 52 52 H 1.09002 * 109.59019 * 113.79619 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9993 -0.5139 5 6 2.2176 1.7714 1.4425 6 6 3.3589 1.2633 -0.7212 7 6 3.1384 0.9184 -2.1954 8 6 4.4668 0.8775 -2.9059 9 8 5.4892 1.1015 -2.2933 10 7 4.5186 0.5908 -4.2218 11 6 3.2887 0.3155 -4.9770 12 6 3.2414 1.2413 -6.1966 13 6 4.5280 1.0752 -7.0085 14 6 5.7305 1.4704 -6.1484 15 1 5.6172 2.5026 -5.8171 16 7 6.9621 1.3407 -6.9385 17 6 7.2121 2.5545 -7.7271 18 6 8.4804 2.3843 -8.5230 19 8 9.1141 1.3533 -8.4409 20 7 8.9105 3.3776 -9.3259 21 6 10.0647 3.2230 -10.0496 22 1 10.6289 2.3050 -9.9765 23 6 10.5079 4.2468 -10.8778 24 7 11.6139 4.0984 -11.5718 25 14 9.5316 5.8343 -11.0047 26 1 10.0108 6.7937 -9.9775 27 1 9.7164 6.4225 -12.3557 28 1 8.0914 5.5489 -10.7818 29 6 5.8061 0.5466 -4.9281 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0278 -0.0005 33 1 2.8828 1.0775 1.9564 34 1 2.6605 2.7674 1.4425 35 1 1.2567 1.8015 1.9563 36 1 3.9931 0.5053 -0.2616 37 1 3.8426 2.2371 -0.6442 38 1 2.5042 1.6765 -2.6549 39 1 2.6546 -0.0554 -2.2723 40 1 3.2872 -0.7234 -5.3066 41 1 2.4216 0.4988 -4.3426 42 1 2.3836 0.9820 -6.8171 43 1 3.1510 2.2756 -5.8649 44 1 4.6298 0.0353 -7.3189 45 1 4.4863 1.7149 -7.8901 46 1 7.7504 1.1254 -6.3465 47 1 6.3771 2.7245 -8.4068 48 1 7.3148 3.4083 -7.0573 49 1 8.4036 4.2020 -9.3918 50 1 11.9235 4.8133 -12.1497 51 1 6.6000 0.8848 -4.2622 52 1 6.0095 -0.4736 -5.2538 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207880486.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:53:52 Heat of formation + Delta-G solvation = -122.189790 kcal Electronic energy + Delta-G solvation = -29779.146580 eV Core-core repulsion = 25585.459864 eV Total energy + Delta-G solvation = -4193.686716 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.55432 -38.95342 -38.53286 -37.72133 -35.21343 -34.16197 -33.88960 -32.44337 -31.67140 -31.08771 -29.85810 -27.20307 -26.52831 -26.10104 -24.45116 -23.55285 -22.73043 -21.54428 -20.49648 -19.44189 -19.08460 -18.33106 -17.52424 -17.31135 -16.37423 -16.13319 -15.76572 -15.53729 -15.45510 -15.37819 -14.99878 -14.73191 -14.37238 -14.23208 -13.91548 -13.78453 -13.63482 -13.51419 -13.09784 -13.00672 -12.82577 -12.71529 -12.61421 -12.45555 -12.14917 -12.00038 -11.87635 -11.75954 -11.56466 -11.46873 -11.20345 -11.14376 -11.03480 -10.94372 -10.80585 -10.59142 -10.13429 -9.97424 -9.94629 -9.56770 -8.89303 -8.58413 -8.21382 -8.15643 -6.30458 -3.81866 2.40975 2.67215 3.02640 3.06920 3.15093 3.31613 3.74576 4.04033 4.10279 4.11819 4.34197 4.48365 4.58052 4.62886 4.68720 4.75782 4.79150 4.82733 4.86614 4.87547 4.93560 5.03258 5.08112 5.16803 5.18511 5.21683 5.26183 5.27618 5.38542 5.43948 5.49761 5.58438 5.60697 5.63588 5.70813 5.72660 5.79595 5.82694 5.88252 5.91391 5.97985 6.19429 6.22098 6.74924 7.06248 7.16079 7.53589 7.58852 7.94874 8.15208 8.60357 8.95626 9.43014 9.83238 10.82688 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.022934 B = 0.001743 C = 0.001723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.579155 B =16057.812932 C =16242.745471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.384 6.384 3 C 0.084 3.916 4 H 0.061 0.939 5 C -0.175 4.175 6 C -0.102 4.102 7 C -0.137 4.137 8 C 0.514 3.486 9 O -0.541 6.541 10 N -0.611 5.611 11 C 0.106 3.894 12 C -0.135 4.135 13 C -0.110 4.110 14 C 0.075 3.925 15 H 0.045 0.955 16 N -0.661 5.661 17 C 0.050 3.950 18 C 0.450 3.550 19 O -0.563 6.563 20 N -0.591 5.591 21 C -0.305 4.305 22 H 0.120 0.880 23 C 0.041 3.959 24 N -0.881 5.881 25 Si 0.880 3.120 26 H -0.271 1.271 27 H -0.276 1.276 28 H -0.270 1.270 29 C 0.110 3.890 30 H 0.040 0.960 31 H 0.041 0.959 32 H 0.085 0.915 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.056 0.944 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.089 0.911 39 H 0.100 0.900 40 H 0.073 0.927 41 H 0.084 0.916 42 H 0.078 0.922 43 H 0.065 0.935 44 H 0.074 0.926 45 H 0.067 0.933 46 H 0.353 0.647 47 H 0.087 0.913 48 H 0.045 0.955 49 H 0.370 0.630 50 H 0.273 0.727 51 H 0.092 0.908 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.118 -3.338 20.942 35.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.303 6.303 3 C 0.026 3.974 4 H 0.079 0.921 5 C -0.233 4.233 6 C -0.140 4.140 7 C -0.176 4.176 8 C 0.303 3.697 9 O -0.418 6.418 10 N -0.345 5.345 11 C -0.017 4.017 12 C -0.174 4.174 13 C -0.149 4.149 14 C -0.036 4.036 15 H 0.063 0.937 16 N -0.294 5.294 17 C -0.083 4.083 18 C 0.236 3.764 19 O -0.445 6.445 20 N -0.230 5.230 21 C -0.434 4.434 22 H 0.137 0.863 23 C -0.161 4.161 24 N -0.521 5.521 25 Si 0.706 3.294 26 H -0.197 1.197 27 H -0.202 1.202 28 H -0.195 1.195 29 C -0.013 4.013 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.103 0.897 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.075 0.925 36 H 0.099 0.901 37 H 0.102 0.898 38 H 0.108 0.892 39 H 0.118 0.882 40 H 0.091 0.909 41 H 0.103 0.897 42 H 0.097 0.903 43 H 0.084 0.916 44 H 0.093 0.907 45 H 0.086 0.914 46 H 0.173 0.827 47 H 0.105 0.895 48 H 0.063 0.937 49 H 0.203 0.797 50 H 0.084 0.916 51 H 0.110 0.890 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -27.148 -4.334 20.658 34.388 hybrid contribution -0.687 2.269 0.230 2.382 sum -27.835 -2.066 20.888 34.862 Atomic orbital electron populations 1.22783 0.81279 1.02745 0.99864 1.87951 1.19434 1.27866 1.95082 1.22205 0.94813 0.84590 0.95779 0.92114 1.22269 1.02331 1.01972 0.96681 1.21482 0.95655 1.03908 0.92923 1.21665 0.95219 1.04444 0.96318 1.20742 0.91625 0.75901 0.81459 1.90710 1.36444 1.49169 1.65463 1.48087 1.07850 1.69947 1.08588 1.21808 0.86440 0.99801 0.93647 1.21943 0.98849 1.00002 0.96578 1.21557 0.92231 1.03091 0.97975 1.21846 0.91711 0.97806 0.92199 0.93699 1.60084 1.05127 1.35541 1.28678 1.21743 0.98152 0.91273 0.97145 1.19687 0.87443 0.85137 0.84147 1.90571 1.58311 1.28152 1.67485 1.42203 1.24252 1.15449 1.41111 1.19440 0.99036 1.04692 1.20209 0.86258 1.25035 0.96397 0.98152 0.96559 1.69621 1.21268 1.33670 1.27557 0.86672 0.79958 0.83948 0.78807 1.19666 1.20161 1.19512 1.21739 0.85763 1.00722 0.93101 0.94184 0.94054 0.89667 0.91528 0.91390 0.92524 0.90091 0.89780 0.89235 0.88212 0.90908 0.89726 0.90309 0.91641 0.90711 0.91403 0.82661 0.89510 0.93725 0.79721 0.91622 0.88975 0.90250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 10.82 101.05 1.09 1.23 16 2 O -0.38 -2.86 9.88 -35.23 -0.35 -3.21 16 3 C 0.08 0.53 2.72 -26.73 -0.07 0.46 16 4 H 0.06 0.30 7.79 -51.93 -0.40 -0.10 16 5 C -0.18 -1.01 9.53 37.16 0.35 -0.66 16 6 C -0.10 -0.79 4.21 -26.73 -0.11 -0.91 16 7 C -0.14 -0.99 3.94 -27.88 -0.11 -1.10 16 8 C 0.51 5.62 7.70 -10.99 -0.08 5.54 16 9 O -0.54 -8.08 15.39 5.56 0.09 -8.00 16 10 N -0.61 -6.02 2.97 -172.74 -0.51 -6.53 16 11 C 0.11 0.71 6.34 -3.71 -0.02 0.69 16 12 C -0.13 -0.95 6.08 -26.61 -0.16 -1.11 16 13 C -0.11 -1.11 5.40 -26.69 -0.14 -1.25 16 14 C 0.08 0.90 2.64 -67.57 -0.18 0.72 16 15 H 0.05 0.56 7.80 -51.93 -0.41 0.15 16 16 N -0.66 -10.21 5.93 -107.85 -0.64 -10.85 16 17 C 0.05 0.83 5.97 -4.98 -0.03 0.80 16 18 C 0.45 10.30 7.82 -10.99 -0.09 10.22 16 19 O -0.56 -15.25 15.78 5.54 0.09 -15.17 16 20 N -0.59 -14.19 5.09 -10.96 -0.06 -14.24 16 21 C -0.31 -8.71 10.16 -14.93 -0.15 -8.86 16 22 H 0.12 3.89 7.39 -52.49 -0.39 3.50 16 23 C 0.04 1.15 5.50 -17.47 -0.10 1.05 16 24 N -0.88 -25.89 13.96 55.50 0.77 -25.12 16 25 Si 0.88 19.46 27.74 -169.99 -4.71 14.75 16 26 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 27 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 28 H -0.27 -5.43 6.52 56.52 0.37 -5.06 16 29 C 0.11 1.27 5.70 -3.69 -0.02 1.25 16 30 H 0.04 0.16 7.87 -51.93 -0.41 -0.25 16 31 H 0.04 0.14 8.08 -51.93 -0.42 -0.27 16 32 H 0.08 0.32 8.14 -51.92 -0.42 -0.11 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.06 0.29 7.87 -51.93 -0.41 -0.12 16 36 H 0.08 0.78 8.10 -51.93 -0.42 0.36 16 37 H 0.08 0.68 8.10 -51.93 -0.42 0.26 16 38 H 0.09 0.47 7.70 -51.93 -0.40 0.07 16 39 H 0.10 0.65 7.62 -51.92 -0.40 0.26 16 40 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.08 0.38 5.93 -51.93 -0.31 0.07 16 42 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 44 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.07 0.72 7.44 -51.93 -0.39 0.34 16 46 H 0.35 5.76 8.06 -39.29 -0.32 5.44 16 47 H 0.09 1.30 7.43 -51.93 -0.39 0.91 16 48 H 0.04 0.67 8.06 -51.93 -0.42 0.25 16 49 H 0.37 7.80 5.76 -40.82 -0.24 7.56 16 50 H 0.27 7.40 8.31 -40.82 -0.34 7.07 16 51 H 0.09 1.23 7.01 -51.93 -0.36 0.87 16 52 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 413.45 15.07 6.23 6.23 Total: -1.00 -35.24 413.45 -7.95 -43.20 By element: Atomic # 1 Polarization: 19.92 SS G_CDS: -9.03 Total: 10.88 kcal Atomic # 6 Polarization: 7.88 SS G_CDS: 0.17 Total: 8.06 kcal Atomic # 7 Polarization: -56.31 SS G_CDS: -0.43 Total: -56.74 kcal Atomic # 8 Polarization: -26.20 SS G_CDS: -0.18 Total: -26.37 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -4.71 Total: 14.75 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -35.24 -7.95 -43.20 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207880486.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.992 kcal (2) G-P(sol) polarization free energy of solvation -35.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds